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Oryza sativa
cluster # 6299 cluster # 6299       Sequences # 4       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6299#0 length = 1336 sequences # 4  

consensusID : consensus_6299#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1336
fasta sequence
                              [TTACATGAGAAATATTATGCTTTCATAAAGGGTGCACCAGAGACCATTCAGGAGAGGTTAGTTGATTTACCCGCTGGATATGTGGAGACATACAAAAAATACACTCGACAGGGGTCCCGAGTCCTGGCCCTTGCATACAAATTGCTTCCGGATATGCCTGTAAATGAAGCTAGAAGTTTGGAAAGGGATCAAGTAGAGAGTGACCTAACTTTTGCAGGTTTTGCGGTTTTCAACTGTCCTATAAGGAGTGACTCCGGTGCTGTCTTACAAGAACTGGAGCAATCTTCCCATGACTTGGTTATGATCACTGGGGACCAAGCTTTGACTGCTTGCCATGTTGCTGGCCAAGTGCATATTTGTTCCAAACCTGTTTTAATTTTGACACGTACAAAGACTGGTGGTTTTGAGTGGGTTTCCCCTGATGAAACCGACAGAGCTCCATACAGCGCTGAGGAGGTTGCCGCGGTGTCTGGATCGCATGATCTCTGCATCAGTGGAGACTGCTTTGAAATGCTACAAAGAACTGATGCTGTTATCCAAGTCATTCCATATGTGAAGGTTTTTGCAC-GTGTTGCTCCAGAACAGAAAGAACTTGTTCTGACTACATTCAAAACTG-TTGGGAGGGTTACACTGATGTGTGGGGATGGAACCAATGATGTTGGTGCACTAAAACAGGCTCATGTTGGCATAGCTCTTTTGAATGCTGAACCTGTCCAGAAATCAGATACAAAATCCCAGGCATCAAAATCTGAAAATAAACAAGGGAAGTTGAAAAAACCGAAACCTTCTCAGGAAGGATCATCATCACAATTGACCCAACCAGCTAACAGCTCCGCTAGAGCATCCAGTAGCCGCCCTTTAACTGCAGCTGAGAGGCAGAGAGAAAGACTGCAGAAGATGATGGATGAAATGAATGAGGAAAGTGATGGCCGTTCAGCTCCTATTGTGAAGCTTGGGGATGCTTCCATGGCTTCACCTTTCACAGCAAAGCATGCCTCTGTTGCCCCTACACTTGACATCATCCGCCAGGGGAGAAGCACCCTAGTCACTACCCTTCAAATGTTCAAGATTCTTGGGCTCAACTGCCTTGCCACTGCATACGTTCTGAGTGTCATGTACTTGGATGGGGGTCAAGCTGGGTGATGTTCAGGCTACTATCAGCGGGGTCTTCACTGCAGCTTTCTTCCTCTTTATTTCCCATGCTCGTCCCTTCAAACACTGTCTGCAGAGCGGGCTCATCCAAACATATTCTGGCATCCGTCTTCTTTCATTCTTGGGTCAGTTGGCATGCCCTTGTTCTTCTGATCTCAGCCGTCATGAGCACCCATATATCCAG]

[+] EMBL CB639416             [TTACATGAGAAATATTATGCTTTCATAAAGGGTGCACCAGAGACCATTCAGGAGAGGTTAGTTGATTTACCCGCTGGATATGTGGAGACATACAAAAAATACACTCGACAGGGGTCCCGAGTCCTGGCCCTTGCATACAAATTGCTTCCGGATATGCCTGTAAATGAAGCTAGAAGTTTGGAAAGGGATCAAGTAGAGAGTGACCTAACTTTTGCAGGTTTTGCGGTTTTCAACTGTCCTATAAGGAGTGACTCCGGTGCTGTCTTACAAGAACTGGAGCAATCTTCCCATGACTTGGTTATGATCACTGGGGACCAAGCTTTGACTGCTTGCCATGTTGCTGGCCAAGTGCATATTTGTTCCAAACCTGTTTTAATTTTGACACGTACAAAGACTGGTGGTTTTGAGTGGGTTTCCCCTGATGAAACCGACAGAGCTCCATACAGCGCTGAGGAGGTTGCCGCGGTGTCTGGATCGCATGATCTCTGCATCAGTGGAGACTGCTTTGAAATGCTACAAAGAACTGATGCTGTTATCCAAGTCATTCCATATGTGAAGGTTTNTGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CA752823             [                                                                                                                                                                                                                                                                                                                                                                                                           TGGTGGTTTTGAGTGGGTTTCCCCTGATGAAACCGACAGAGCTCCATACAGCGCTGAGGAGGTTGCCGCGGTGTCTGGATCGCATGATCTCTGCATCAGTGGAGACTGCTTTGAAATGCTACAAAGAACTGATGCTGTTATCCAAGTCATTCCATATGTGAAGGTTTTTGCAC GTGTTGCTCCAGAACAGAAAGAACTTGTTCTGACTACATTCAAAACTG TTGGGAGGGTTACACTGATGTGTGGGGATGGAACCAATGATGTTGGTGCACTAAAACAGGCTCATGTTGGCATAGCTCTTTTGAATGCTGAACCTGTCCAGAAATCAGATACAAAATCCCAGGCATCAAAATCTGAAAATAAACAAGGGAAGTTGAAAAAACCGAAACCTTCTCAGGAAGGATCATCATCACAATTGACCCAACCAGCTAACAGCTCCGCTAGAGCATCCAGTAGCCGCCCATTAACTGCAGCTGAGAGGCAGAGAGAAAGACTGCAGAAGATGATGCATGAAATGAATGAGGAAAGTGATGGCCGTTCAGCTCCTATTGTGAAGCTTGGGGATGCTTCCATGGCTTCACCTTTCACAGCAAAGCATGCCTCTGTTGCCCCTACA                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL BI118799             [                                                                                                                                                                                                                                                                                                                                                                                                            GGTGGTTTTGAGTGGGTTTCCCCTGATGAAACCGACAGAGCTCCATACAGCGCTGAGGAGGTTGCCGCGGCGTCTGGATCGCATGATCTCTGCATCAGTGGAGACTGCTTTGAAATGCTACAAAGAACTGATGCTGTTATCCAAGTCATTCCATATGTGAAGGTTTTTGCACTGTGTTGCTCCAGAACAGAAAGAACTTGTTCTGACTACATTCAAAACTGTTTGGGAGGGTTACACTGATGTGTGGGGATGGAACCAATGATGTTGGTGCACTAAAACAGGCTCATGTTGGCATAGCTCTTTTGAATGCTGAACCTGTCCAGAAATCAGATACAAAATCCCAGGCATCAAAATCTGAAAATAAACAAGGGAAGTTGAAAAAACCGAAACCTTCTCAGGAAGGATCATCATCACAATTGACCCAACCAGCTAACAGCTCCGCTAGAGCATCCAGTAGCCGCCCTTTAACTGCAGCTGAGAGGCAGAGAGAAAGACTGCAGAAGACGATGGATGAAATGAATGAGGAAAGTGATGGCCGTTCAGCTCCTATTGTGAGGCTTGGGGATGCTTCCATGGCTTCACCTTTCACAGCAAAGCATGCCTCTGTTGCCCCTACACTTGACATCATCCGCCAGGGGAGAAGCACCCTAGTCACTACCCTTCAAATGTTCAAGATTCTTGGGCTCAACTGCCTTGCCACTGCATACGTTCTG                                                                                                                                                                                                                                     ]
[+] EMBL AF474888             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     CTCTTTTGAATGCTGAACCTGTCCAGAAATCAGATACAAAATCCCAGGCATCAAAATCTGAAAATAAACAAGGGAAGTTGAAAAAACCGAAACCTTCTCAGGAAGGATCATCATCACAATTGACCCAACCAGCTAACAGCTCCGCTAGAGCATCCAGTAGCCGCCCTTTAACTGCAGCTGAGAGGCAGAGAGAAAGACTGCAGAAGATGATGGATGAAATGAATGAGGAAAGTGATGGCCGTTCAGCTCCTATTGTGAAGCTTGGGGATGCTTCCATGGCTTCACCTTTCACAGCAAAGCATGCCTCTGTTGCCCCTACACTTGACATCATCCGCCAGGGGAGAAGCACCCTAGTCACTACCCTTCAAATGTTCAAGATTCTTGGGCTCAACTGCCTTGCCACTGCATACGTTCTGAGTGTCATGTACTTGGATGGGGGTCAAGCTGGGTGATGTTCAGGCTACTATCAGCGGGGTCTTCACTGCAGCTTTCTTCCTCTTTATTTCCCATGCTCGTCCCTTCAAACACTGTCTGCAGAGCGGGCTCATCCAAACATATTCTGGCATCCGTCTTCTTTCATTCTTGGGTCAGTTGGCATGCCCTTGTTCTTCTGATCTCAGCCGTCATGAGCACCCATATATCCAG]


>consensus_6299#0 TTACATGAGAAATATTATGCTTTCATAAAGGGTGCACCAGAGACCATTCAGGAGAGGTTA GTTGATTTACCCGCTGGATATGTGGAGACATACAAAAAATACACTCGACAGGGGTCCCGA GTCCTGGCCCTTGCATACAAATTGCTTCCGGATATGCCTGTAAATGAAGCTAGAAGTTTG GAAAGGGATCAAGTAGAGAGTGACCTAACTTTTGCAGGTTTTGCGGTTTTCAACTGTCCT ATAAGGAGTGACTCCGGTGCTGTCTTACAAGAACTGGAGCAATCTTCCCATGACTTGGTT ATGATCACTGGGGACCAAGCTTTGACTGCTTGCCATGTTGCTGGCCAAGTGCATATTTGT TCCAAACCTGTTTTAATTTTGACACGTACAAAGACTGGTGGTTTTGAGTGGGTTTCCCCT GATGAAACCGACAGAGCTCCATACAGCGCTGAGGAGGTTGCCGCGGTGTCTGGATCGCAT GATCTCTGCATCAGTGGAGACTGCTTTGAAATGCTACAAAGAACTGATGCTGTTATCCAA GTCATTCCATATGTGAAGGTTTTTGCACGTGTTGCTCCAGAACAGAAAGAACTTGTTCTG ACTACATTCAAAACTGTTGGGAGGGTTACACTGATGTGTGGGGATGGAACCAATGATGTT GGTGCACTAAAACAGGCTCATGTTGGCATAGCTCTTTTGAATGCTGAACCTGTCCAGAAA TCAGATACAAAATCCCAGGCATCAAAATCTGAAAATAAACAAGGGAAGTTGAAAAAACCG AAACCTTCTCAGGAAGGATCATCATCACAATTGACCCAACCAGCTAACAGCTCCGCTAGA GCATCCAGTAGCCGCCCTTTAACTGCAGCTGAGAGGCAGAGAGAAAGACTGCAGAAGATG ATGGATGAAATGAATGAGGAAAGTGATGGCCGTTCAGCTCCTATTGTGAAGCTTGGGGAT GCTTCCATGGCTTCACCTTTCACAGCAAAGCATGCCTCTGTTGCCCCTACACTTGACATC ATCCGCCAGGGGAGAAGCACCCTAGTCACTACCCTTCAAATGTTCAAGATTCTTGGGCTC AACTGCCTTGCCACTGCATACGTTCTGAGTGTCATGTACTTGGATGGGGGTCAAGCTGGG TGATGTTCAGGCTACTATCAGCGGGGTCTTCACTGCAGCTTTCTTCCTCTTTATTTCCCA TGCTCGTCCCTTCAAACACTGTCTGCAGAGCGGGCTCATCCAAACATATTCTGGCATCCG TCTTCTTTCATTCTTGGGTCAGTTGGCATGCCCTTGTTCTTCTGATCTCAGCCGTCATGA GCACCCATATATCCAG



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)