cluster # 6307

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Oryza sativa
cluster # 6307 cluster # 6307 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6307#0 length = 675 sequences # 3

consensus_6307#1 length = 400 sequences # 1

consensusID : consensus_6307#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 675
fasta sequence

                              [AGCCCGGCCGCCTCGTCTTCAAGGGCGGCGAGGCCGCCTCCCTCCACAAGCCGCCGAAGAAGCACAAGAAGAACAAGAAGCCCGCCTCCGACGCCCCCGCCGACGCCGAAGCCGACGCGGAAGGCGCAGCGGCGCCCTCCGCGGAGGGCGCCGCCGAGGGCGGCGGCGACGAGTACACCATCGACGCGGCGAAGCGGATGAAGTACGAGGATCTATTCCCCGTGGAGTCGAAGAAGTTCGGGTACGACCCCGCCAACGCCGCCAAGGCCTCCCGCAGCCGCACCGTGGAGGAGGCCCTCGACGACCGCGTGCGCAAGAAGGCCGACCGATACTGCAAGTGAGGTGAGAGCCCTTAGAAGCTAGGGTTTCCGGCTCCACGGAGCCCGGCGTTCGATGCTTTGCTCTAGTCGGATCTAGCTCCGGATTCAATTCCAATCGAGTTCTCTCGACTTATTGTACTGCCGCCACACATGAATTTGCTTGAATTAGCTTGAATGGTGGAGTGGGTTATGTTTGATCGCCGAATTCTGGTTTATACACTGTGGAATATGAAGACGTGCTGTAACTGCAACTAACTGATGATTAATGTGTAACGCGGTCTAGTTGCAATGTTCCTATTAGTCGTAGCAAAGCTGTATCGTGTGCATTATAATCCAGAATTATCGAAATTGCTGG]

[+] EMBL AU166917             [AGCCCGGCCGCCTCGTCTTCAAGGGCGGCGAGGCCGCCTCCCTCCACAAGCCGCCGAAGAAGCACAAGAAGAACAAGAAGCCCGCCTCCGACGCCCCCGCCGACGCCGAAGCCGACGCGGAAGGCGCAGCGGCGCCCTCCGCGGAGGGCGCCGCCGAGGGCGGCGGCGACGAGTACACCATCGACGCGGCGAAGCGGATGAAGTACGAGGATCTATTCCCCGTGGAGTCGAAGAAGTTCGGGTACGACCCCGCCAACGCCGCCAAGGCCTCCCGCAGCCGCACCGTGGAGGAGGCCCTCGACGACCGCGTGCGCAAGAAGGCCGACCGATACTGCAAGTGAGGTGAGAGCCCTTAGAAGCTAGGGTTTCCGGCTCCACGGAGCCCGGCGTTCGATGCTTTGCTCTAGTCGGATCTAGCTCCGGATTCAA                                                                                                                                                                                                                                                      ]
[+] EMBL AK107723             [                             GAGGCCGCCTCCCTCCACAAGCCGCCGAAGAAGCACAAGAAGAACAAGAAGCCCGCCTCCGACGCCCCCGCCGACGCCGAAGCCGACGCGGAAGGCGCAGCGGCGCCCTCCGCGGAGGGCGCCGCCGAGGGCGGCGGCGACGAGTACACCATCGACGCGGCGAAGCGGATGAAGTACGAGGATCTATTCCCCGTGGAGTCGAAGAAGTTCGGGTACGACCCCGCCAACGCCGCCAAGGCCTCCCGCAGCCGCACCGTGGAGGAGGCCCTCGACGACCGCGTGCGCAAGAAGGCCGACCGATACTGCAAGTGAGGTGAGAGCCCTTAGAAGCTAGGGTTTCCGGCTCCACGGAGCCCGGCGTTCGATGCTTTGCTCTAGTCGGATCTAGCTCCGGATTCAATTCCAATCGAGTTCTCTCGACTTATTGTACTGCCGCCACACATGAATTTGCTTGAATTAGCTTGAATGGTGGAGTGGGTTATGTTTGATCGCCGAATTCTGGTTTATACACTGTGGAATATGAAGACGTGCTGTAACTGCAACTAACTGATGATTAATGTGTAACGCGGTCTAGTTGCAATGTTCCTATTAGTCGTAGCAAAGCTGTATCGTGTGCATTATAATCCAGAATTATCGAAATTGCTGG]
[+] EMBL AU166918             [                                                                                                                                                        GCCGAGGGCGGCGGCGACGAGTACACCATCGACGCGGCGAAGCGGATGAAGTACGAGGATCTATTCCCCGTGGAGTCGAAGAAGTTCGGGTACGACCCCGCCAACGCCGCCAAGGCCTCCCGCAGCCGCACCGTGGAGGAGGCCCTCGACGACCGCGTGCGCAAGAAGGCCGACCGATACTGCAAGTGAGGTGAGAGCCCTTAGAAGCTAGGGTTTCCGGCTCCACGGAGCCCGGCGTTCGATGCTTTGCTCTAGTCGGATCTAGCTCCGGATTCAATTCCAATCGAGTTCTCTCGACTTATTGTACTGCCGCCACACATGAATTTGCTTGAATTAGCTTGAATGGTGGAGTGGGTTATGTTTGATCGCCGAATTCTGGTTTATACACTGTGGAATATGAAGACGTGCTGTAACTGCAACTAAaaaaaa                                                                                              ]




>consensus_6307#0
AGCCCGGCCGCCTCGTCTTCAAGGGCGGCGAGGCCGCCTCCCTCCACAAGCCGCCGAAGA
AGCACAAGAAGAACAAGAAGCCCGCCTCCGACGCCCCCGCCGACGCCGAAGCCGACGCGG
AAGGCGCAGCGGCGCCCTCCGCGGAGGGCGCCGCCGAGGGCGGCGGCGACGAGTACACCA
TCGACGCGGCGAAGCGGATGAAGTACGAGGATCTATTCCCCGTGGAGTCGAAGAAGTTCG
GGTACGACCCCGCCAACGCCGCCAAGGCCTCCCGCAGCCGCACCGTGGAGGAGGCCCTCG
ACGACCGCGTGCGCAAGAAGGCCGACCGATACTGCAAGTGAGGTGAGAGCCCTTAGAAGC
TAGGGTTTCCGGCTCCACGGAGCCCGGCGTTCGATGCTTTGCTCTAGTCGGATCTAGCTC
CGGATTCAATTCCAATCGAGTTCTCTCGACTTATTGTACTGCCGCCACACATGAATTTGC
TTGAATTAGCTTGAATGGTGGAGTGGGTTATGTTTGATCGCCGAATTCTGGTTTATACAC
TGTGGAATATGAAGACGTGCTGTAACTGCAACTAACTGATGATTAATGTGTAACGCGGTC
TAGTTGCAATGTTCCTATTAGTCGTAGCAAAGCTGTATCGTGTGCATTATAATCCAGAAT
TATCGAAATTGCTGG

consensusID : consensus_6307#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 400
fasta sequence

                              [CGCACGGCGCCCTCCGCGGAGGGCGCCGCCGAGGGAGGCGGCGACGAGTACACCATCGACGCGGCGAAGCGGATGAAGTACGAGGATCTATTCCCCGTGGAGTCGAAGAAGTTCGGGTACGACCCCGCCAACGCCGCCAAGGCCTCCCGCAGCCGCACCGTGGAGGAGGCCCTCGACGACCGCGTGCGCAAGAAGGCCGACCGATACTGCAAGTGAGGTGAGAGCCCTTAGAAGCTAGGGTTTCCGGCTCCACGGAGCCCGGCGTTCGATGCTTTGCTCTAGTCGGATCTAGCTCCGGATTCCATTCCCATCGAGTTCTCTCGACTTATTGTACTGCCGCCACACATGAATTTGCTTGAATTAGCTTGAATGGTGGAGTGGGTTATGTTTAAAAAAAAAA]

[+] EMBL BI796902             [CGCACGGCGCCCTCCGCGGAGGGCGCCGCCGAGGGAGGCGGCGACGAGTACACCATCGACGCGGCGAAGCGGATGAAGTACGAGGATCTATTCCCCGTGGAGTCGAAGAAGTTCGGGTACGACCCCGCCAACGCCGCCAAGGCCTCCCGCAGCCGCACCGTGGAGGAGGCCCTCGACGACCGCGTGCGCAAGAAGGCCGACCGATACTGCAAGTGAGGTGAGAGCCCTTAGAAGCTAGGGTTTCCGGCTCCACGGAGCCCGGCGTTCGATGCTTTGCTCTAGTCGGATCTAGCTCCGGATTCCATTCCCATCGAGTTCTCTCGACTTATTGTACTGCCGCCACACATGAATTTGCTTGAATTAGCTTGAATGGTGGAGTGGGTTATGTTTAAAAAAAAAA]




>consensus_6307#1
CGCACGGCGCCCTCCGCGGAGGGCGCCGCCGAGGGAGGCGGCGACGAGTACACCATCGAC
GCGGCGAAGCGGATGAAGTACGAGGATCTATTCCCCGTGGAGTCGAAGAAGTTCGGGTAC
GACCCCGCCAACGCCGCCAAGGCCTCCCGCAGCCGCACCGTGGAGGAGGCCCTCGACGAC
CGCGTGCGCAAGAAGGCCGACCGATACTGCAAGTGAGGTGAGAGCCCTTAGAAGCTAGGG
TTTCCGGCTCCACGGAGCCCGGCGTTCGATGCTTTGCTCTAGTCGGATCTAGCTCCGGAT
TCCATTCCCATCGAGTTCTCTCGACTTATTGTACTGCCGCCACACATGAATTTGCTTGAA
TTAGCTTGAATGGTGGAGTGGGTTATGTTTAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6307#0      AGCCCGGCCGCCTCGTCTTCAAGGGCGGCGAGGCCGCCTCCCTCCACAAGCCGCCGAAGA 60
consensus_6307#1      ------------------------------------------------------------
                                                                                  

consensus_6307#0      AGCACAAGAAGAACAAGAAGCCCGCCTCCGACGCCCCCGCCGACGCCGAAGCCGACGCGG 120
consensus_6307#1      ------------------------------------------------------------
                                                                                  

consensus_6307#0      AAGGCGCAGCGGCGCCCTCCGCGGAGGGCGCCGCCGAGGGCGGCGGCGACGAGTACACCA 180
consensus_6307#1      ----CGCA-CGGCGCCCTCCGCGGAGGGCGCCGCCGAGGGAGGCGGCGACGAGTACACCA 55
                          **** ******************************* *******************

consensus_6307#0      TCGACGCGGCGAAGCGGATGAAGTACGAGGATCTATTCCCCGTGGAGTCGAAGAAGTTCG 240
consensus_6307#1      TCGACGCGGCGAAGCGGATGAAGTACGAGGATCTATTCCCCGTGGAGTCGAAGAAGTTCG 115
                      ************************************************************

consensus_6307#0      GGTACGACCCCGCCAACGCCGCCAAGGCCTCCCGCAGCCGCACCGTGGAGGAGGCCCTCG 300
consensus_6307#1      GGTACGACCCCGCCAACGCCGCCAAGGCCTCCCGCAGCCGCACCGTGGAGGAGGCCCTCG 175
                      ************************************************************

consensus_6307#0      ACGACCGCGTGCGCAAGAAGGCCGACCGATACTGCAAGTGAGGTGAGAGCCCTTAGAAGC 360
consensus_6307#1      ACGACCGCGTGCGCAAGAAGGCCGACCGATACTGCAAGTGAGGTGAGAGCCCTTAGAAGC 235
                      ************************************************************

consensus_6307#0      TAGGGTTTCCGGCTCCACGGAGCCCGGCGTTCGATGCTTTGCTCTAGTCGGATCTAGCTC 420
consensus_6307#1      TAGGGTTTCCGGCTCCACGGAGCCCGGCGTTCGATGCTTTGCTCTAGTCGGATCTAGCTC 295
                      ************************************************************

consensus_6307#0      CGGATTCAATTCCAATCGAGTTCTCTCGACTTATTGTACTGCCGCCACACATGAATTTGC 480
consensus_6307#1      CGGATTCCATTCCCATCGAGTTCTCTCGACTTATTGTACTGCCGCCACACATGAATTTGC 355
                      ******* ***** **********************************************

consensus_6307#0      TTGAATTAGCTTGAATGGTGGAGTGGGTTATGTTTGATCGCCGAATTCTGGTTTATACAC 540
consensus_6307#1      TTGAATTAGCTTGAATGGTGGAGTGGGTTATGTTTAAAAAAAAAA--------------- 400
                      *********************************** *      **               

consensus_6307#0      TGTGGAATATGAAGACGTGCTGTAACTGCAACTAACTGATGATTAATGTGTAACGCGGTC 600
consensus_6307#1      ------------------------------------------------------------
                                                                                  

consensus_6307#0      TAGTTGCAATGTTCCTATTAGTCGTAGCAAAGCTGTATCGTGTGCATTATAATCCAGAAT 660
consensus_6307#1      ------------------------------------------------------------
                                                                                  

consensus_6307#0      TATCGAAATTGCTGG 675
consensus_6307#1      ---------------