These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6319#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1839 fasta sequence [TTACCGATCCGATCCGATTCGCCGGCGTCGGCGGCGGCGGCGGCGAGATGGATTTGCCGGCGAGCCGCGGGCGGTGGCGGAAGCGGAGCGCCCGGTCGCACGCGCCCCTCCTCGTGGCCGTCCTCGTGCTCCTCATCCCGGCCTCCCTCCTCCTCTCCTCGGCCTACTCCTCGCTGCTCCGCTCCATCCTCCCCTTCTCCGGCTTCGGAGGCGGTGGCGGAGGAGGGGGCAGAAGATGTGGGCGGTCGCCGGAGCTGGAAGGGGAGAGGTTTCTTTGGTACGCGCCGCACAGCGGGTTCAGCAACCAGGTGGGCGAGCTCCGGAATGCCGCCGTCGCCGCCGCGCTGCTCAACCGCACCCTCGTCGTGCCCCCGGTGCTCGACCACCACGCCGTCGTCCTCGGGAGCTGCCCCAAGTTCAGGGTCGCCGACGCTTCCGACCTCCGCGCCGCCGTCTGGGACCACTCCATGCAGCTCCTCCGGGAGCGGAGGTATGTATCCATGGGTGACATAATTGATCTATCGCCGATAAAGGCTACGGTTAGAACGATTGATTTCAGGGTGTTTGTCTCATTGTGGTGCGGCGTAGACATGCGCAAGACTTGCTTCTCTGGCTTGTGCTGTGCTGTCTCTGGTGGTGGATCGCTGCCAGGTGATTACGATAGATGCCGATCGATGCTGTCCGGTTTAGGGGGCAGCGAAAATGGCTGTGTGTATCCTGTCCAGGACGATTGCCGAACAACAGTCTGGACATATCAAGAGAATAATGATGGGGCGCTTGATTCATTTCAACCAGATGAAGACTTGAAAAAGAGGAAAAAGATATCATACGTTAGGAGGCGCAAAGATATGTACAAGGCTTTGGGGCCTGGTTCTGAAGCTGAGGATGCTTCCTTGTTGGCATTTGGGACACTTTTCTCAGGACCATACAAGGGATCAGAGTCATATTTTGATATCCACGAATCGCCAAAGGATCGTCGGCTACAGACTATACTTGAGAAGGTTGAGTTCCTCCCTTTTGCCCCTGAGATCATTGCTACAGGGAAGGAGTTCGCTAGGAAAAAGATCAAGGAGCCATTTCTTTGCGCACAGCTAAGGCTGTTAGATGGGCAATTCAAAAATCACTGGAAAGCTACATTTTCTGCACTCAAGGAGAAGTTAAAGGCTGTTGCGTTGGAAATGAAGAAAACCCAGGGTAGTGGTCCTATTCACATGTTCATGATGACTGATCTTCCACCAGCAAACTGGTCAAAGACCTATCTTGCAGATATTGCAAAAGATGGGAGATATAAATTGCACACCCTGAAGGAAAGTGATGAACTGGTGGCACAGACCGCAGAGCGGCTTATGGCTGCTGAACATGGTGTGAGATCTGGATTTATTCCCAAAAACATAGCAAACACGAGGAAGGATTGTGATCCAGTTCAACTACCAGAAATTTTGTTATATGTTGAAGAATCTGTCTGTAGCTGTGCATCACTAGGATTTGTGGGGACTGCTGGATCAACCATAGCAGGAAGCATAGAAACAATGAGGAAGAACAATGTCTGCCAATTGTAGGAGAACTGCACACATCCTTCGAGCAAACTGCCTGAAAAAACTAACCACCGTTACTTGACTC-GTCGACTGTAGATAGCAATATGAGAG-CCGTTACACAACAGAAGCTGAA-TCCTTGAGATC-TTCCATCCCCAGTG-CATGCATGACTGCATGAG-TATATAATGCTGAAAGCCCACGTTTTTTTTGTTTTTTTTATTTGAGTA-GAAAGGTATAACGTGTG-CCTTAATCATTCAGTTTTGTAAGTTTGGATACATTTATTTATTTTTTGGTATGTAATGTATCC] [+] EMBL AK066634 [TTACCGATCCGATCCGATTCGCCGGCGTCGGCGGCGGCGGCGGCGAGATGGATTTGCCGGCGAGCCGCGGGCGGTGGCGGAAGCGGAGCGCCCGGTCGCACGCGCCCCTCCTCGTGGCCGTCCTCGTGCTCCTCATCCCGGCCTCCCTCCTCCTCTCCTCGGCCTACTCCTCGCTGCTCCGCTCCATCCTCCCCTTCTCCGGCTTCGGAGGCGGTGGCGGAGGAGGGGGCAGAAGATGTGGGCGGTCGCCGGAGCTGGAAGGGGAGAGGTTTCTTTGGTACGCGCCGCACAGCGGGTTCAGCAACCAGGTGGGCGAGCTCCGGAATGCCGCCGTCGCCGCCGCGCTGCTCAACCGCACCCTCGTCGTGCCCCCGGTGCTCGACCACCACGCCGTCGTCCTCGGGAGCTGCCCCAAGTTCAGGGTCGCCGACGCTTCCGACCTCCGCGCCGCCGTCTGGGACCACTCCATGCAGCTCCTCCGGGAGCGGAGGTATGTATCCATGGGTGACATAATTGATCTATCGCCGATAAAGGCTACGGTTAGAACGATTGATTTCAGGGTGTTTGTCTCATTGTGGTGCGGCGTAGACATGCGCAAGACTTGCTTCTCTGGCTTGTGCTGTGCTGTCTCTGGTGGTGGATCGCTGCCAGGTGATTACGATAGATGCCGATCGATGCTGTCCGGTTTAGGGGGCAGCGAAAATGGCTGTGTGTATCCTGTCCAGGACGATTGCCGAACAACAGTCTGGACATATCAAGAGAATAATGATGGGGCGCTTGATTCATTTCAACCAGATGAAGACTTGAAAAAGAGGAAAAAGATATCATACGTTAGGAGGCGCAAAGATATGTACAAGGCTTTGGGGCCTGGTTCTGAAGCTGAGGATGCTTCCTTGTTGGCATTTGGGACACTTTTCTCAGGACCATACAAGGGATCAGAGTCATATTTTGATATCCACGAATCGCCAAAGGATCGTCGGCTACAGACTATACTTGAGAAGGTTGAGTTCCTCCCTTTTGCCCCTGAGATCATTGCTACAGGGAAGGAGTTCGCTAGGAAAAAGATCAAGGAGCCATTTCTTTGCGCACAGCTAAGGCTGTTAGATGGGCAATTCAAAAATCACTGGAAAGCTACATTTTCTGCACTCAAGGAGAAGTTAAAGGCTGTTGCGTTGGAAATGAAGAAAACCCAGGGTAGTGGTCCTATTCACATGTTCATGATGACTGATCTTCCACCAGCAAACTGGTCAAAGACCTATCTTGCAGATATTGCAAAAGATGGGAGATATAAATTGCACACCCTGAAGGAAAGTGATGAACTGGTGGCACAGACCGCAGAGCGGCTTATGGCTGCTGAACATGGTGTGAGATCTGGATTTATTCCCAAAAACATAGCAAACACGAGGAAGGATTGTGATCCAGTTCAACTACCAGAAATTTTGTTATATGTTGAAGAATCTGTCTGTAGCTGTGCATCACTAGGATTTGTGGGGACTGCTGGATCAACCATAGCAGGAAGCATAGAAACAATGAGGAAGAACAATGTCTGCCAATTGTAGGAGAACTGCACACATCCTTCGAGCAAACTGCCTGAAAAAACTAACCACCGTTACTTGACTC GTCGACTGTAGATAGCAATATGAGAG CCGTTACACAACAGAAGCTGAA TCCTTGAGATC TTCCATCCCCAGTG CATGCATGACTGCATGAG TATATAATGCTGAAAGCCCACGTTTTTTTTGTTTTTTTTATTTGAGTA GAAAGGTATAACGTGTG CCTTAATCATTCAGTTTTGTAAGTTTGGATACATTTATTTATTTTTTGGTATGTAATGTATCC] [+] EMBL CB641122 [ GGCGTCGGCGGCGGCGGCGGCGAGATGGATTTGCCGGCGAGCCGCGGGCGGTGGCGGAAGCGGAGCGCCCGGTCGCACGCGCCCCTCCTCGTGGCCGTCCTCGTGCTCCTCATCCCGGCCTCCCTCCTCCTCTCCTCGGCCTACTCCTCGCTGCTCCGCTCCATCCTCCCCTTCTCCGGCTTCGGAGGCGGTGGCGGAGGAGGGGGCAGAAGATGTGGGCGGTCGCCGGAGCTGGAAGGGGAGAGGTTTCTTTGGTACGCGCCGCACAGCGGGTTCAGCAACCAGGTGGGCGAGCTCCGGAATGCCGCCGTCGCCGCCGCGCTGCTCAACCGCACCCTCGTCGTGCCCCCGGTGCTCGACCACCACGCCGTCGTCCTCGGGAGCTGCCCCAAGTTCAAGGTCGCCGACGCTTCCGACCTCCGCGCCGCCGTCTGGGACCACTCCATGCAGCTCCTCCGGGAGCGGAGGTATGTATCCATGGGTGACATAATTGATCTATCGCCGATAAAGGCTACGGTTAGAACGATTGATTTCAGGGTGTTTGTCTCATTGTGGTGCGGCGTA ] [+] EMBL CA766380 [ ATATTTTGATATCCACGAATCGCCAAAGGATCGTCAGCTACAGACTATACTTGAGAAGGTTGAGTTCCTCCCTTTTGCCCCTGAGATCATTGCTACAGGGAAGGAGTTCGCTAGGAAAAAGATCAAGGAGCCATTTCTTTGCGCACAGCTAAGGCTGTTAGATGGGCAATTCAAAAATCACTGGAAAGCTACATTTTCTGCACTCAAGGAGAAGTTAAAGGCTGNTGCGTTGGAAATGAANAAAACCCAGGGTAGTGGTCCTATTCACATGTTCATGATGACTGATCTTCCACCAGCAAACTGGTCAAAGACCTATCTTGCAGATATTGCAAAAGATGGGAGATATAAATTGCACACCCTGAAGGAAAGTGATGAACTGGTGGCACAGACCGCAGAGCGGCTTATGGCTGCTGAACATGGTGTGAGATCTGGATTTATTCCCAAAAACATAGCAAACACGAGGAAGGATTGTGATCCAGTTCAACTACCAGAAATTTTGTTATATGTTGAAGAATCTGTCTGTAGCTGTGCATCACTAGGATTTGTGGGGACTGCTGGATCAACCATAGCAGGAAGCATAGAAACAATGAGGAAGAACAATGTCTGNCAATTGTAGGAGAACTGCACACATCCTTCGAGCAAACTGGCTGNAAAAACTAACCACCGGTACTTGACTCGGTCGACTGTAGATAGCAATATGAAAGCCCGTTNCACAACANAAGCTGAATTCCTTGAGATCNTTCATTCCCCAGNGCCATGCATGACTGCATGAGNNTTTTAATGCTGNAAGNCCCCGNTTTTTTTG TTTTTTTNTTTGGGTANAAAAGGGATAACGGGGGNCCTT ] consensusID : consensus_6319#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 465 fasta sequence [CCGATTCGCCGGCGTCGGCGGCGGCGGCGGCGAGATGGATTTGCCGGCGAGCCGCGGGCGGTGGCGGAAGCGGACNNCCGGTCGCACGCGCCCCTCCTCGTGGCCGTCCTCGTGCTCCTCATCCCGGCCTCCCTCCTCCTCTCCTCGGCCTACTCCTCGCTGCTCCGCTCCATCCTCCCCTTCTCCGGCTTCGGAGGCGGTGGCGGAGGAGGGGGCAGAAGATGTGGGCGGTCGCCGGAGCTGGAAGGGGAGAGGTTTCTTTGGTACGCGCCGCACAGCGGGTTCAGCAACCAGGTGGGCGAGCTCCGGAATGACCGCCGTCGCCGCCGCGCTGCTCAACCGAACCCTCGTCGTAACCTGGTGCTGAACAACAAGGCGTCGTCTTGGGAGCTGGCCTAAGTTAAGGGTCGCGANGGTTTCGAACTTCGTGTGTNTTTGGGANAATTATGAAGTTTTNTGGGAGGG] [+] EMBL OS0581A [CCGATTCGCCGGCGTCGGCGGCGGCGGCGGCGAGATGGATTTGCCGGCGAGCCGCGGGCGGTGGCGGAAGCGGACNNCCGGTCGCACGCGCCCCTCCTCGTGGCCGTCCTCGTGCTCCTCATCCCGGCCTCCCTCCTCCTCTCCTCGGCCTACTCCTCGCTGCTCCGCTCCATCCTCCCCTTCTCCGGCTTCGGAGGCGGTGGCGGAGGAGGGGGCAGAAGATGTGGGCGGTCGCCGGAGCTGGAAGGGGAGAGGTTTCTTTGGTACGCGCCGCACAGCGGGTTCAGCAACCAGGTGGGCGAGCTCCGGAATGACCGCCGTCGCCGCCGCGCTGCTCAACCGAACCCTCGTCGTAACCTGGTGCTGAACAACAAGGCGTCGTCTTGGGAGCTGGCCTAAGTTAAGGGTCGCGANGGTTTCGAACTTCGTGTGTNTTTGGGANAATTATGAAGTTTTNTGGGAGGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6319#0 TTACCGATCCGATCCGATTCGCCGGCGTCGGCGGCGGCGGCGGCGAGATGGATTTGCCGG 60 consensus_6319#1 -------------CCGATTCGCCGGCGTCGGCGGCGGCGGCGGCGAGATGGATTTGCCGG 47 *********************************************** consensus_6319#0 CGAGCCGCGGGCGGTGGCGGAAGCGGAGCGCCCGGTCGCACGCGCCCCTCCTCGTGGCCG 120 consensus_6319#1 CGAGCCGCGGGCGGTGGCGGAAGCGGA-CNNCCGGTCGCACGCGCCCCTCCTCGTGGCCG 106 *************************** * ***************************** consensus_6319#0 TCCTCGTGCTCCTCATCCCGGCCTCCCTCCTCCTCTCCTCGGCCTACTCCTCGCTGCTCC 180 consensus_6319#1 TCCTCGTGCTCCTCATCCCGGCCTCCCTCCTCCTCTCCTCGGCCTACTCCTCGCTGCTCC 166 ************************************************************ consensus_6319#0 GCTCCATCCTCCCCTTCTCCGGCTTCGGAGGCGGTGGCGGAGGAGGGGGCAGAAGATGTG 240 consensus_6319#1 GCTCCATCCTCCCCTTCTCCGGCTTCGGAGGCGGTGGCGGAGGAGGGGGCAGAAGATGTG 226 ************************************************************ consensus_6319#0 GGCGGTCGCCGGAGCTGGAAGGGGAGAGGTTTCTTTGGTACGCGCCGCACAGCGGGTTCA 300 consensus_6319#1 GGCGGTCGCCGGAGCTGGAAGGGGAGAGGTTTCTTTGGTACGCGCCGCACAGCGGGTTCA 286 ************************************************************ consensus_6319#0 GCAACCAGGTGGGCGAGCTCCGGAATG-CCGCCGTCGCCGCCGCGCTGCTCAACCGCACC 359 consensus_6319#1 GCAACCAGGTGGGCGAGCTCCGGAATGACCGCCGTCGCCGCCGCGCTGCTCAACCGAACC 346 *************************** **************************** *** consensus_6319#0 CTCGTCGTGCCCCCGGTGCTCGACCACCACGCCGTCGTCCTCGGGAGCTGCCCCAAGTTC 419 consensus_6319#1 CTCGTCGTAACCT-GGTGCT-GAACAACAAGGCGTCGTC-TTGGGAGCTGGCCTAAGTTA 403 ******** ** ****** ** ** ** * ******* * ******** ** ***** consensus_6319#0 AGGGTCGCCGACGCTTCCGACCTCCGCGCCGCCGTCTGGGACCACTCCATGCAGCTCCTC 479 consensus_6319#1 AGGGTCGC-GANGGTTTCGAACTTCGTGTG--TNTTTGGGANAATT--ATGAAGTTT-TN 457 ******** ** * ** *** ** ** * * ***** * * *** ** * * consensus_6319#0 CGGGAGCGGAGGTATGTATCCATGGGTGACATAATTGATCTATCGCCGATAAAGGCTACG 539 consensus_6319#1 TGGGAGGG---------------------------------------------------- 465 ***** * consensus_6319#0 GTTAGAACGATTGATTTCAGGGTGTTTGTCTCATTGTGGTGCGGCGTAGACATGCGCAAG 599 consensus_6319#1 ------------------------------------------------------------ consensus_6319#0 ACTTGCTTCTCTGGCTTGTGCTGTGCTGTCTCTGGTGGTGGATCGCTGCCAGGTGATTAC 659 consensus_6319#1 ------------------------------------------------------------ consensus_6319#0 GATAGATGCCGATCGATGCTGTCCGGTTTAGGGGGCAGCGAAAATGGCTGTGTGTATCCT 719 consensus_6319#1 ------------------------------------------------------------ consensus_6319#0 GTCCAGGACGATTGCCGAACAACAGTCTGGACATATCAAGAGAATAATGATGGGGCGCTT 779 consensus_6319#1 ------------------------------------------------------------ consensus_6319#0 GATTCATTTCAACCAGATGAAGACTTGAAAAAGAGGAAAAAGATATCATACGTTAGGAGG 839 consensus_6319#1 ------------------------------------------------------------ consensus_6319#0 CGCAAAGATATGTACAAGGCTTTGGGGCCTGGTTCTGAAGCTGAGGATGCTTCCTTGTTG 899 consensus_6319#1 ------------------------------------------------------------ consensus_6319#0 GCATTTGGGACACTTTTCTCAGGACCATACAAGGGATCAGAGTCATATTTTGATATCCAC 959 consensus_6319#1 ------------------------------------------------------------ consensus_6319#0 GAATCGCCAAAGGATCGTCGGCTACAGACTATACTTGAGAAGGTTGAGTTCCTCCCTTTT 1019 consensus_6319#1 ------------------------------------------------------------ consensus_6319#0 GCCCCTGAGATCATTGCTACAGGGAAGGAGTTCGCTAGGAAAAAGATCAAGGAGCCATTT 1079 consensus_6319#1 ------------------------------------------------------------ consensus_6319#0 CTTTGCGCACAGCTAAGGCTGTTAGATGGGCAATTCAAAAATCACTGGAAAGCTACATTT 1139 consensus_6319#1 ------------------------------------------------------------ consensus_6319#0 TCTGCACTCAAGGAGAAGTTAAAGGCTGTTGCGTTGGAAATGAAGAAAACCCAGGGTAGT 1199 consensus_6319#1 ------------------------------------------------------------ consensus_6319#0 GGTCCTATTCACATGTTCATGATGACTGATCTTCCACCAGCAAACTGGTCAAAGACCTAT 1259 consensus_6319#1 ------------------------------------------------------------ consensus_6319#0 CTTGCAGATATTGCAAAAGATGGGAGATATAAATTGCACACCCTGAAGGAAAGTGATGAA 1319 consensus_6319#1 ------------------------------------------------------------ consensus_6319#0 CTGGTGGCACAGACCGCAGAGCGGCTTATGGCTGCTGAACATGGTGTGAGATCTGGATTT 1379 consensus_6319#1 ------------------------------------------------------------ consensus_6319#0 ATTCCCAAAAACATAGCAAACACGAGGAAGGATTGTGATCCAGTTCAACTACCAGAAATT 1439 consensus_6319#1 ------------------------------------------------------------ consensus_6319#0 TTGTTATATGTTGAAGAATCTGTCTGTAGCTGTGCATCACTAGGATTTGTGGGGACTGCT 1499 consensus_6319#1 ------------------------------------------------------------ consensus_6319#0 GGATCAACCATAGCAGGAAGCATAGAAACAATGAGGAAGAACAATGTCTGCCAATTGTAG 1559 consensus_6319#1 ------------------------------------------------------------ consensus_6319#0 GAGAACTGCACACATCCTTCGAGCAAACTGCCTGAAAAAACTAACCACCGTTACTTGACT 1619 consensus_6319#1 ------------------------------------------------------------ consensus_6319#0 CGTCGACTGTAGATAGCAATATGAGAGCCGTTACACAACAGAAGCTGAATCCTTGAGATC 1679 consensus_6319#1 ------------------------------------------------------------ consensus_6319#0 TTCCATCCCCAGTGCATGCATGACTGCATGAGTATATAATGCTGAAAGCCCACGTTTTTT 1739 consensus_6319#1 ------------------------------------------------------------ consensus_6319#0 TTGTTTTTTTTATTTGAGTAGAAAGGTATAACGTGTGCCTTAATCATTCAGTTTTGTAAG 1799 consensus_6319#1 ------------------------------------------------------------ consensus_6319#0 TTTGGATACATTTATTTATTTTTTGGTATGTAATGTATCC 1839 consensus_6319#1 ---------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||