These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6320#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1248 fasta sequence [TCTTCTCCTCCACCTCCAAGTACTCCGCATCCATCCATGGCCACCACCGCCCTCTGATCCGATCGATACTGATCAGCCAGTAGCTATGCTGGGTTCGGACCAGCTCGAGCACCGCCCGGCGCCGTCGGCTCCCCGCGCCGAGCCGGACGATGTCGCCGACGACGTGGAGGTGGAGGCGTTCCGGGACATCCACCCGGAGCCGTCGCCTCCGCATCTACCGCCGCCGCCGCTCAGGCAGCCGTCGTGGGACGCCGCGAGCCACCGCTCGCTGTCGTCCTCCGGCGCGGGCGGCGGCGGCGACGTCGAGCTGTTCGCCACCATGAGCCGCGAGTTCACCGCCATGGTGGCGGCCGGGTCGTCGTCCGCGCCCAGCCCCGACGTTCCCGGCGACGCCCCCGCCGCCGCCGACCTGAACCTGCTGCAGCTGGCGCGCATCGGCGAGAACGAGCCGGCGGCCGAGGCGAACGCGCTCGCCATCGTGCCGGCGGCGGCGGGCAGCGGCCCGCCGGCGCCGGTGGAGCAGGTGAAGAAGGAGGAGGTGGAGGCGAAGGTGGCGGCGTGGCAGGCGGAGGAGGTGGCCAAGATCAACAACAAGTTCAAGCGCGAGGAGGTCGTCATCAATGGCTGGGAGAGCCAGCAAGTCGACAAGGCCACCGCCTGGCTCGCCAAGATCGAGAGGAAGCTGGAGGAGGAGCGGGCGAAGGCGACGGAGAAGGCTCGCAACGAGGCGGCGGCGGCGCGGCGGAAGGCGGAGGAGCGGCGGGCGTCGGCGGAGGCGCGGCGCGGGAGGAAGACGGCAGAGGTGCTCGACCGTGCCAACTTCTGCAAGGCCGCCGGCAGGGTGCCATCCAAGCGCTCCTTCTTCTCCTTCTAAAGTTCTAACCAAAGCTAGCTAGCCTTGCTCAATTATATCATCTCTAGCTAGCTAATTATGATTATTACTTGTTTTCTACTTAATTGATCAATCAATTTCACATCATCTTCTTCTTTGCATATGGTTGATCAAGTAGCTCTATTGCTTCTATATAATCATGATATATGTTGTATATATATGTGTTACTTAATTCTGTAGAAATGTGTGCTTAGTTTTGTATTGTAAACATTCAGAGTTCAGAGGAGTGTTCGCAAAGTAGTGATTTGTACTGACCTTATAGAACATAATGCTAATGCTTAATTACTTAGACTGTCCTACTGTATGTTTGTGCAGTTAAATCTGAAATGTTAGCCATTACAGACCTTAAAAAAAAA] [+] EMBL AK067003 [TCTTCTCCTCCACCTCCAAGTACTCCGCATCCATCCATGGCCACCACCGCCCTCTGATCCGATCGATACTGATCAGCCAGTAGCTATGCTGGGTTCGGACCAGCTCGAGCACCGCCCGGCGCCGTCGGCTCCCCGCGCCGAGCCGGACGATGTCGCCGACGACGTGGAGGTGGAGGCGTTCCGGGACATCCACCCGGAGCCGTCGCCTCCGCATCTACCGCCGCCGCCGCTCAGGCAGCCGTCGTGGGACGCCGCGAGCCACCGCTCGCTGTCGTCCTCCGGCGCGGGCGGCGGCGGCGACGTCGAGCTGTTCGCCACCATGAGCCGCGAGTTCACCGCCATGGTGGCGGCCGGGTCGTCGTCCGCGCCCAGCCCCGACGTTCCCGGCGACGCCCCCGCCGCCGCCGACCTGAACCTGCTGCAGCTGGCGCGCATCGGCGAGAACGAGCCGGCGGCCGAGGCGAACGCGCTCGCCATCGTGCCGGCGGCGGCGGGCAGCGGCCCGCCGGCGCCGGTGGAGCAGGTGAAGAAGGAGGAGGTGGAGGCGAAGGTGGCGGCGTGGCAGGCGGAGGAGGTGGCCAAGATCAACAACAAGTTCAAGCGCGAGGAGGTCGTCATCAATGGCTGGGAGAGCCAGCAAGTCGACAAGGCCACCGCCTGGCTCGCCAAGATCGAGAGGAAGCTGGAGGAGGAGCGGGCGAAGGCGACGGAGAAGGCTCGCAACGAGGCGGCGGCGGCGCGGCGGAAGGCGGAGGAGCGGCGGGCGTCGGCGGAGGCGCGGCGCGGGAGGAAGACGGCAGAGGTGCTCGACCGTGCCAACTTCTGCAAGGCCGCCGGCAGGGTGCCATCCAAGCGCTCCTTCTTCTCCTTCTAAAGTTCTAACCAAAGCTAGCTAGCCTTGCTCAATTATATCATCTCTAGCTAGCTAATTATGATTATTACTTGTTTTCTACTTAATTGATC ] [+] EMBL CF324895 [ AGAGGTGCTCGACCGTGCCAACTTCTGCAAGGCCGCCGGCAGGGTGCCATCCAAGCGCTCCTTCTTCTCCTTCTAAAGTTCTAACCAAAGCTAGCTAGCCTTGCTCAATTATATCATCTCTAGCTAGCTAATTATGATTATTACTTGTTTTCTACTTAATTGATCAATCAATTTCACATCATCTTCTTCTTTGCATATGGTTGATCAAGTAGCTCTATTGCTTCTATATAATCATGATATATGTTGTATATATATGTGTTACTTAATTCTGTAGAAATGTGTGCTTAGTTTTGTATTGTAAACATTCAGAGTTCAGAGGAGTGTTCGCAAAGTAGTGATTTGTACTGACCTTATAGAACATAATGCTAATGCTTAATTACTTAGACTGTCCTACTGTATGTTTGTGCAGTTAAATCTGAAATGTTAGCCATTACAGACCTTAAAAAAAAA] consensusID : consensus_6320#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 311 fasta sequence [CAAATTTTAATTGAATTTANTTAACTCTGTTTTTTCTAACTTAAAATTCGAGTCACATTCGACATTTTTCACCATTTCACTCGTTTCTTTCTCTTTGCATTATCTGGTTTGTACTCCATAGNTCACCNCCTTCTATTTGCTTTCTATGTACTAATTCACTGATATACTGTTGTATATATATGTGTTACTTAATTCTGTAGAAATGTGTGCTTAGTTTTGTATTGTAAACATTCAGAGTTCAGAGGAGTGTTCGCAAAGTAGTGATTTGTACTGACCTTANNGCNCATAATGCTAATGCCTTAATTGAAAAA] [+] EMBL BQ906452 [CAAATTTTAATTGAATTTANTTAACTCTGTTTTTTCTAACTTAAAATTCGAGTCACATTCGACATTTTTCACCATTTCACTCGTTTCTTTCTCTTTGCATTATCTGGTTTGTACTCCATAGNTCACCNCCTTCTATTTGCTTTCTATGTACTAATTCACTGATATACTGTTGTATATATATGTGTTACTTAATTCTGTAGAAATGTGTGCTTAGTTTTGTATTGTAAACATTCAGAGTTCAGAGGAGTGTTCGCAAAGTAGTGATTTGTACTGACCTTANNGCNCATAATGCTAATGCCTTAATTGAAAAA] consensusID : consensus_6320#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 251 fasta sequence [TAATTGATCAATCAATTTCCACCATCCATCCTTCTTCCTTTGCCATACTCGCTTTGATCAAGTAGCTCTATTGCTTCTATATAATCCATGATATATTTGTATATATATGTGTTACTTAATTCTGTAGAAATGTGTGCTTAGTTTTGTATTGTAAACCATTCCAGGAGTTCCCAGAGGAGTGTTCCCCAAAGTAGTGGATTTGTACTGACCCCTTATTAGAACCATAATGGCTAATGCTTAATTACTTAAAA] [+] EMBL BM421520 [TAATTGATCAATCAATTTCCACCATCCATCCTTCTTCCTTTGCCATACTCGCTTTGATCAAGTAGCTCTATTGCTTCTATATAATCCATGATATATTTGTATATATATGTGTTACTTAATTCTGTAGAAATGTGTGCTTAGTTTTGTATTGTAAACCATTCCAGGAGTTCCCAGAGGAGTGTTCCCCAAAGTAGTGGATTTGTACTGACCCCTTATTAGAACCATAATGGCTAATGCTTAATTACTTAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6320#0 TCTTCTCCTCCACCTCCAAGTACTCCGCATCCATCCATGGCCACCACCGCCCTCTGATCC 60 consensus_6320#2 ------------------------------------------------------------ consensus_6320#1 ------------------------------------------------------------ consensus_6320#0 GATCGATACTGATCAGCCAGTAGCTATGCTGGGTTCGGACCAGCTCGAGCACCGCCCGGC 120 consensus_6320#2 ------------------------------------------------------------ consensus_6320#1 ------------------------------------------------------------ consensus_6320#0 GCCGTCGGCTCCCCGCGCCGAGCCGGACGATGTCGCCGACGACGTGGAGGTGGAGGCGTT 180 consensus_6320#2 ------------------------------------------------------------ consensus_6320#1 ------------------------------------------------------------ consensus_6320#0 CCGGGACATCCACCCGGAGCCGTCGCCTCCGCATCTACCGCCGCCGCCGCTCAGGCAGCC 240 consensus_6320#2 ------------------------------------------------------------ consensus_6320#1 ------------------------------------------------------------ consensus_6320#0 GTCGTGGGACGCCGCGAGCCACCGCTCGCTGTCGTCCTCCGGCGCGGGCGGCGGCGGCGA 300 consensus_6320#2 ------------------------------------------------------------ consensus_6320#1 ------------------------------------------------------------ consensus_6320#0 CGTCGAGCTGTTCGCCACCATGAGCCGCGAGTTCACCGCCATGGTGGCGGCCGGGTCGTC 360 consensus_6320#2 ------------------------------------------------------------ consensus_6320#1 ------------------------------------------------------------ consensus_6320#0 GTCCGCGCCCAGCCCCGACGTTCCCGGCGACGCCCCCGCCGCCGCCGACCTGAACCTGCT 420 consensus_6320#2 ------------------------------------------------------------ consensus_6320#1 ------------------------------------------------------------ consensus_6320#0 GCAGCTGGCGCGCATCGGCGAGAACGAGCCGGCGGCCGAGGCGAACGCGCTCGCCATCGT 480 consensus_6320#2 ------------------------------------------------------------ consensus_6320#1 ------------------------------------------------------------ consensus_6320#0 GCCGGCGGCGGCGGGCAGCGGCCCGCCGGCGCCGGTGGAGCAGGTGAAGAAGGAGGAGGT 540 consensus_6320#2 ------------------------------------------------------------ consensus_6320#1 ------------------------------------------------------------ consensus_6320#0 GGAGGCGAAGGTGGCGGCGTGGCAGGCGGAGGAGGTGGCCAAGATCAACAACAAGTTCAA 600 consensus_6320#2 ------------------------------------------------------------ consensus_6320#1 ------------------------------------------------------------ consensus_6320#0 GCGCGAGGAGGTCGTCATCAATGGCTGGGAGAGCCAGCAAGTCGACAAGGCCACCGCCTG 660 consensus_6320#2 ------------------------------------------------------------ consensus_6320#1 ------------------------------------------------------------ consensus_6320#0 GCTCGCCAAGATCGAGAGGAAGCTGGAGGAGGAGCGGGCGAAGGCGACGGAGAAGGCTCG 720 consensus_6320#2 ------------------------------------------------------------ consensus_6320#1 ------------------------------------------------------------ consensus_6320#0 CAACGAGGCGGCGGCGGCGCGGCGGAAGGCGGAGGAGCGGCGGGCGTCGGCGGAGGCGCG 780 consensus_6320#2 ------------------------------------------------------------ consensus_6320#1 ------------------------------------------------------------ consensus_6320#0 GCGCGGGAGGAAGACGGCAGAGGTGCTCGACCGTGCCAACTTCTGCAAGGCCGCCGGCAG 840 consensus_6320#2 ------------------------------------------------------------ consensus_6320#1 ------------------------------------------------------------ consensus_6320#0 GGTGCCATCCAAGCGCTCCTTCTTCTCCTTCTAAAGTTCTAACCAAAGCTAGCTAGCCTT 900 consensus_6320#2 ------------------------------------------------------------ consensus_6320#1 --------------------------------CAAATTTTAATTGAATTTANTTAACTCT 28 consensus_6320#0 GCTCAATTATATCATCTCTAGCTAGCTAATTATGATTATTACTTGTTTTCTACTTAATTG 960 consensus_6320#2 ------------------------------------------------------TAATTG 6 consensus_6320#1 GTT---TTTTCTAACTTAAAATTCG--AGTCACATTCGACATTTTTCACCATTTCACTCG 83 * * * consensus_6320#0 ATCAATCAATTTCACATCATC-----TTCTTCTTTGCATATGGT-----TGATCAAGTAG 1010 consensus_6320#2 ATCAATCAATTTC-CACCATCCATCCTTCTTCCTTTGCCATACTCGCTTTGATCAAGTAG 65 consensus_6320#1 TTTCTTTCTCTTTGCATTATC-----TGGTTTGTACTCCATAGNT--CACCNCCTTCTAT 136 * * ** ** *** * ** * ** * ** consensus_6320#0 CTCTATTGCTTCTATATAATC-ATGATATA-TGTTGTATATATATGTGTTACTTAATTCT 1068 consensus_6320#2 CTCTATTGCTTCTATATAATCCATGATATA-T-TTGTATATATATGTGTTACTTAATTCT 123 consensus_6320#1 TTGCTTTCTATGTACTAATTCACTGATATACTGTTGTATATATATGTGTTACTTAATTCT 196 * ** * ** * ** ******* * *************************** consensus_6320#0 GTAGAAATGTGTGCTTAGTTTTGTATTGTAAAC-ATTC--AGAGTTC--AGAGGAGTGTT 1123 consensus_6320#2 GTAGAAATGTGTGCTTAGTTTTGTATTGTAAACCATTCCAGGAGTTCCCAGAGGAGTGTT 183 consensus_6320#1 GTAGAAATGTGTGCTTAGTTTTGTATTGTAAAC-ATTC--AGAGTTC--AGAGGAGTGTT 251 ********************************* **** ****** *********** consensus_6320#0 CGC-AAAGTAGTG-ATTTGTACTGACC--TTAT-AGAAC-ATAATG-CTAATGC-TTAAT 1175 consensus_6320#2 CCCCAAAGTAGTGGATTTGTACTGACCCCTTATTAGAACCATAATGGCTAATGC-TTAAT 242 consensus_6320#1 CGC-AAAGTAGTG-ATTTGTACTGACC--TTAN-NGCNC-ATAATG-CTAATGCCTTAAT 304 * * ********* ************* *** * * ****** ******* ***** consensus_6320#0 TACTTAGACTGTCCTACTGTATGTTTGTGCAGTTAAATCTGAAATGTTAGCCATTACAGA 1235 consensus_6320#2 TACTTAAAA--------------------------------------------------- 251 consensus_6320#1 TGAAAAA----------------------------------------------------- 311 * * consensus_6320#0 CCTTAAAAAAAAA 1248 consensus_6320#2 ------------- consensus_6320#1 ------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||