These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6327#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 744 fasta sequence [AGGGATGGAGACGAGCGCGATAGCGAGGATAGGGCCCCACCTGCTGCGCCGCGTCATCGCCGCCGCCGGACCTCCGCCACCGCCGTCGACGGCGCCGGTGCCGGAGGAGATGCCCGGCGCCGCCGCCGCCGCCGCTCCGATGACGCTCTTCTACAACGGTTCAGTCGCCGTCTTCGACGTCTCCCACGATAAGGCAGAGGCTATAATGAGGATGGCAACCGAGGCAACTAAAGCAAAAGGACTCGCTCGTGGCAATGCAATTGTAGGCAATTTTGCCAAAGAGCCACTCACAAGAACTAAATCTCTGCAACGATTCCTCTCCAAGAGAAAAGAGAGGTTGACCAGCTTGGGTCCGTACCAGGTGGGTGGGCCCGCTGCCGTCGGTGCGACGACGTCGACCACCACCAAGTCTTTTCTTGCGAAGGAAGAGGAGCACACGGCGTCCTAGCTAGCCTCCTAGCTAGCTAATTACTGTTGATTTGGTCCCCTTGATTAATCGTTTATTATTAATAATTATTTCATTGATTCCATCATTAGTAGAGGGTACAGACCAGGCAGGGGCCAGTTAATAATCCTGTTTAGTGTTGATCGATCGATAGATTAACCATACTCCATATGTAGGTCTGTGTGTAATATTGATTTATATATATAGTAGTATCTATAGTTGATTACAAGGTCATGGATTTTATGGATGTGTAAAGCAAGCTTAGAGTGAATATTGGATGCATTTATGATTTATACTAT] [+] EMBL AK107750 [AGGGATGGAGACGAGCGCGATAGCGAGGATAGGGCCCCACCTGCTGCGCCGCGTCATCGCCGCCGCCGGACCTCCGCCACCGCCGTCGACGGCGCCGGTGCCGGAGGAGATGCCCGGCGCCGCCGCCGCCGCCGCTCCGATGACGCTCTTCTACAACGGTTCAGTCGCCGTCTTCGACGTCTCCCACGATAAGGCAGAGGCTATAATGAGGATGGCAACCGAGGCAACTAAAGCAAAAGGACTCGCTCGTGGCAATGCAATTGTAGGCAATTTTGCCAAAGAGCCACTCACAAGAACTAAATCTCTGCAACGATTCCTCTCCAAGAGAAAAGAGAGGTTGACCAGCTTGGGTCCGTACCAGGTGGGTGGGCCCGCTGCCGTCGGTGCGACGACGTCGACCACCACCAAGTCTTTTCTTGCGAAGGAAGAGGAGCACACGGCGTCCTAGCTAGCCTCCTAGCTAGCTAATTACTGTTGATTTGGTCCCCTTGATTAATCGTTTATTATTAATAATTATTTCATTGATTCCATCATTAGTAGAGGGTACAGACCAGGCAGGGGCCAGTTAATAATCCTGTTTAGTGTTGATCGATCGATAGATTAACCATACTCCATATGTAGGTCTGTGTGTAATATTGATTTATATATATAGTAGTATCTATAGTTGATTACAAGGTCATGGATTTTATGGATGTGTAAAGCAAGCTTAGAGTGAATATTGGATGCATTTATGATTTATACTAT] consensusID : consensus_6327#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 666 fasta sequence [GAAAAAATGTGTATTTAGGTGACAAACAAAATATATGAAAATTGCATTGTCTATACCTCTCTTTTCTCTTGGAGAGGAATCGTTGCAGAGATTTAGTTCTTGTGAGTGGCTCTGCAAACAAGAAGAGTTGAAGAACAATACTATAAGCCACAGGAAAAAAAAACAGATTAAAAAAGAACATATTTTTGTTGTTCTGCTGATTACTTTTCGCAACAATTCTACTAACATTAACAAACCTTTGGCAAAATTGCCTACAATTGCATTGCCACGAGCGAGTCCTTTTGCTTTAGTTGCCTCGGTTGCCATCCTCATTATAGCCTCTGCCTAGGGATGGAATATGGAAAGGGAAAGCATTGAGAAGATTGTATCTCTATGAAATTGTACTATCTACCACTATCAAGCTAATTTAAGGGAGATAGTATATCATTGTGCGCATCCCTTCCAGCCATCATGCATGAAAAACAAGAACTCTTTTAATTTAGACTTGGTGCAGTTCGATCCTACACCATGATTTTGATTGTAAATTAATTCTATGTTAACGCTGTATGATTTTTAATGGACAGACTTTTCTTCTCCTAGGAAAGGGTCATATCATCGTAGTTTTGTCTTTGGGTAATTAATCTATATTATCCCCCTTTATTTTGTTTTGCTATTAAGTCACATCAC] [+] EMBL CF326043 [GAAAAAATGTGTATTTAGGTGACAAAC AAATATATGAAAATTGCATTGTCTATACCTCTCTTTTCTCTTGGAGAGGAATCGTTGCAGAGATTTAGTTCTTGTGAGTGGCTCTGCAAACAAGAAGAGTTGAAGAACAATACTATAAGCCACAGGAAAAAAAAACAGATTAAAAAAGAACATATTTTTGTTGTTCTGCTGATTACTTTTCGCAACAATTCTACTAACATTAACAAACCTTTGGCAAAATTGCCTACAATTGCATTGCCACGAGCGAGTCCTTTTGCTTTAGTTGCCTCGGTTGCCATCCTCATTATAGCCTCTGCCTAGGGATGGAATATGGAAAGGGAAAGCATTGAGAAGATTGTATCTCTATGAAATTGTACTATCTACCACTATCAAGCTAATTTAAGGGAGATAGTATATCATTGTGCGCATCCCTTCCAGCCATCATGCATGAAAAACAAGAACTCTTTTAATTTAGACTTGGTGCAGTTCGATCCTACACCATGATTTTGATTGTAAATTAATTCTATGTTAACGCTGTATGATTTTTAATGGACAGACTTTTCTTCTCCTAGGAAAGGGTCATATCATCGTAGTTTTGTCTTTGGGTAATTAATCTATATTATCCCCCTTTATTTTGTTTTGCTATTAAGTCACATCAC] [+] EMBL CF326475 [GAAAAAATGTGTATTTAGGTGACAAACAAAATATATGAAAATTGCATTGTCTATACCTCTCTTTTCTCTTGGAGAGGAATCGTTGCAGAGATTTAGTTCTTGTGAGTGGCTCTGCAAACAAGAAGAGTTGAAGAACAATACTATAAGCCACAGGAAAAAAAAACAGATTAAAAAAGAACATATTTTTGTTGTTCTGCTGATTACTTTTCGCAACAATTCTACTAACATTAACAAACCTTTGGCAAAATTGCCTACAATTGCATTGCCACGAGCGAGTCCTTTTGCTTTAGTTGCCTCGGTTGCCATCCTCATTATAGCCTCTGCCTAGGGATGGAATATGGAAAGGGAAAGCATTGAGAAGATTGTATCTCTATGAAATTGTACTATCTACCACTATCAAGCTAATTTAAGGGAGATAGTATATCATTGTGCGCATCCCTTCCAGCCATCATGCATGAAAAACAAGAACTCTTTTAATTTAGACTTGGTGCAGTTCGATCCTACACCATGATTTTGATTGTAAATTAATTCTATGTTAACGCTGTATGATTTTTAATGGACAGACTTTTCTTCTCCTAGGAAA GGTCATA ] [+] EMBL CF324975 [ AAAAAATGTGTATTTAGGTGACAAACAAAATATATGAAAATTGCATTGTCTATACCTCTCTTTTCTCTTGGAGAGGAATCGTTGCAGAGATTTAGTTCTTGTGAGTGGCTCTGCAAACAAGAAGAGTTGAAGAACAATACTATAAGCCACAGGAAAAAAAAACAGATTAAAAAAGAACATATTTTTGTTGTTCTGCTGATTACTTTTCGCAACAATTCTACTAACATTAACAAACCTTTGGCAAAATTGCCTACAATTGCATTGCCACGAGCGAGTCCTTTTGCTTTAGTTGCCTCGGTTGCCATCCTCATTATAGCCTCTGCCTAGGGATGGAATATGGAAAGGGAAAGCATTGAGAAGATTGTATCTCTATGAAATTGTACTATCTACCACTATCAAGCTAATTTAAGGGAGATAGTATATCATTGTGCGCATCCCTTCCAGCCATC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6327#0 AGGGATGGAGACGAGCGCGATAGCGAGGATAGGGCCCCACCTGCTGCGCCGCGTCATCGC 60 consensus_6327#1 ------------------------------------------------------------ consensus_6327#0 CGCCGCCGGACCTCCGCCACCGCCGTCGACGGCGCCGGTGCCGGAGGAGATGCCCGGCGC 120 consensus_6327#1 -------GAAAAAATGTGTATTTAGGTGACAAACAAAATATATGAAAATTGCATTGTCTA 53 * * * * *** * ** * * * consensus_6327#0 CGCCGCCGCCGCCGCTCCGATGACGCTCTTCTACAACGGTTCAGTCGCCGTCTTCGACGT 180 consensus_6327#1 TACCTCTCTTTTCTCTTGGAGAGGAATCGT-TGCAGAGATTTAGTTCTTGTGAGTGGCTC 112 ** * * ** ** ** * * ** * ** *** ** * * consensus_6327#0 CTCCCACGATAAGGC---AGAGGCTATAATGAGGATGGCAACCGAGGCAACTAAAGCAAA 237 consensus_6327#1 TGCAAACAAGAAGAGTTGAAGAACAATACTATAAGCCACAGGAAAAAAAAACAGATTAAA 172 * ** * *** * * *** * ** * ** * * *** consensus_6327#0 AGGACTCGC-TCGTGGCAATGCAATTGTAGGCAATTTTGCCAAAGAGCCACTCACAAGAA 296 consensus_6327#1 AAAGAACATATTTTTGTTGTTCTGCTGATTACT-TTTCGCAACAATTCTACTAACATTAA 231 * * * * * * * ** * *** ** * * * *** *** ** consensus_6327#0 CTAAATCTCTGCAACGATTCCTCTCCAAGAGAAAAGAGAGGTTGACCAGCTTGGGTCCGT 356 consensus_6327#1 C-AAACCTTTGGCAAAATTGC-CTACAATTGCA--------TTGCCACGAGCGAGTCCTT 281 * *** ** ** * *** * ** *** * * *** * * * **** * consensus_6327#0 ACCAGGTGGGTGGGCCCGCTGCCGTCGGTGCGACGACGTCGACCACCACCAAGTCTTTTC 416 consensus_6327#1 TTGCTTTAGTTGCCTCGGTTGCCATCCTCATTATAGCCTCTGCCTAGGGATGGAATATGG 341 * * ** * * **** ** * * ** ** * * * consensus_6327#0 TTGCGAAGGAAGAGGAGCACACGGCGTCCTAGCTAGCCTCCTAGCTAGCTAATTACTGTT 476 consensus_6327#1 AAAGGGAAAGCATTGAGAAGATTGTATCTCTATGAAATTGT--ACTATCTA-CCACTATC 398 * * *** * * * ** * * *** *** *** * consensus_6327#0 GATTTGGTCCCCTTGATTAATCGTTTATTATTAATAATTATTTCATTGATTCCATCATTA 536 consensus_6327#1 AAGCTAATTTAAGGGA--GATAGTATATCATTG-TGCGCATCCCTTCCAG-CCATCATGC 454 * * * ** ** ** *** *** * ** * * * ******* consensus_6327#0 GTAGAGGGTACAGACCAGGCAGGGGCCAGTTAATAATCCTGTTTAGTGTTGATCGATCGA 596 consensus_6327#1 ATGAAAAACAAGAACTCTTTTAATTTAGACT--TGGTGCAGTTCGATCCTACACCATGAT 512 * * * ** * * * * *** * * * ** consensus_6327#0 TA-GATTAACCAT--ACTCCATATGTAGGTCTGTGTGTAATATTGATTTATATATATAGT 653 consensus_6327#1 TTTGATTGTAAATTAATTCTATGT-TAACGCTGTATG-ATTTTTAATGGACAGACTTTTC 570 * **** ** * ** ** * ** **** ** * * ** ** * * * * consensus_6327#0 AGTATCTAT-AGTTGATTACAAGGTCATGGATTT---TATGGATGTGTAAAGCAAGCTTA 709 consensus_6327#1 TTCTCCTAGGAAAGGGTCATATCATCGTAGTTTTGTCTTTGGGTAATTAATCTATATTAT 630 *** * * * * * ** * * *** * *** * *** * * consensus_6327#0 GAGTGAATATTGGATGCATTTAT-GATTTATACTAT 744 consensus_6327#1 CCCCCTTTATTTTGTTTTGCTATTAAGTCACATCAC 666 **** * *** * * * * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||