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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6328#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1231 fasta sequence
[ACACGGTGCATCTCTCAGCCACACAGCCCCACCCGCGCCATGTCACTCGCCACCGCCGCCGCCGGAGCGCAACCGTTCGTCCGCTCCTCCTCCTCCGCCGCCGCGGCGTCCTCGTCGCGGCCCCTGCTCGCCGTCGCCGCCGCCCGCCACCGCCGCCCGCATGGATCTCTCGCCGCCGCCGCCGCCGCGGCAAGGCGGCGTCGTCGTCGTCCGCTCCTCCAGGTGCGCGCGGCAAGGACGGAGTCCACGGGCGTCTCCGTCGGGTTCCGCGCGCCCCAGTTCGAGCTCCCGGAGCCACTGACGGGGAAGCTCTGGACATTGGATGACTTCGAAGGCAACCCCGCGCTGCTGGTTATGTTTGTATGTAATCACTGTCCATTCGTAAAGCATCTCAAAAAAGATATTGCGAAGCTCACCTCATTCTACATGGAGAAAGGGCTTGCTGCTGTTGCCATATCCTCGAACTCAATTGTGACACACCCACAGGATGGTCCTGATTACATAGCTGAGGAAGCAAAATTGTATAAATACTCTTTCCCGTATCTATATGATGAGTCTCAAGAAGTTGCTAAAGCTTTTCGAGCCGTCTGCACGCCAGAGTTTTACTTGTTCAAAAAGGATGGACGAAGGCCATTTGAGCTTTTCTACCATGGGCAGTTTGACGATTCAAGACCGAGTAACAACGTGCCAGTTACCGGAAGGGATTTAAGTCGTGCGATTGATTGTGCACTTAGTGGACAAGAGCTACCTTTTGTGCCAAAACCCAGTGTCGGGTGCAGCATCAAATGGCACCCATGAAGAGCGTATTGCATTGTCATGTGCTGGAATATAGATGTTTTTCCCCCTTAAATTGAAGGTTGAACATGGGGATTGAGGTGAGCCATGCTCTCTACTACTAGAAGTATGGAAGCACACACATAGTAGATTTATGATAGCTAATTTCACATAGTAGATTTATGATAGCTAATTTATAATGTAATTTTTAAGGGAAATAGATGCAGTTGAGGCCTTGTGGAGCTGATTCTTAACGTTGTGGGGGCTGTTCAACTTGAGAGTTGCAAAACTAGACATGAATGGCGTGGATAGTGTTATGTTGTGTGCTGGTGTCTCATCTTGGCCGGAAAAAGAAAAACTGATGGATGTAACTGGTATTTGTGCAACAATGGGATAATGCACACAAGTACAATAACCCATTATTATGGCTAACACAACACCCACGGGTGAAAATTAA]
[+] EMBL AK066852 [ACACGGTGCATCTCTCAGCCACACAGCCCCACCCGCGCCATGTCACTCGCCACCGCCGCCGCCGGAGCGCAACCGTTCGTCCGCTCCTCCTCCTCCGCCGCCGCGGCGTCCTCGTCGCGGCCCCTGCTCGCCGTCGCCGCCGCCCGCCACCGCCGCCCGCATGGATCTCTCGCCGCCGCCGCCGCCGCGGCAAGGCGGCGTCGTCGTCGTCCGCTCCTCCAGGTGCGCGCGGCAAGGACGGAGTCCACGGGCGTCTCCGTCGGGTTCCGCGCGCCCCAGTTCGAGCTCCCGGAGCCACTGACGGGGAAGCTCTGGACATTGGATGACTTCGAAGGCAACCCCGCGCTGCTGGTTATGTTTGTATGTAATCACTGTCCATTCGTAAAGCATCTCAAAAAAGATATTGCGAAGCTCACCTCATTCTACATGGAGAAAGGGCTTGCTGCTGTTGCCATATCCTCGAACTCAATTGTGACACACCCACAGGATGGTCCTGATTACATAGCTGAGGAAGCAAAATTGTATAAATACTCTTTCCCGTATCTATATGATGAGTCTCAAGAAGTTGCTAAAGCTTTTCGAGCCGTCTGCACGCCAGAGTTTTACTTGTTCAAAAAGGATGGACGAAGGCCATTTGAGCTTTTCTACCATGGGCAGTTTGACGATTCAAGACCGAGTAACAACGTGCCAGTTACCGGAAGGGATTTAAGTCGTGCGATTGATTGTGCACTTAGTGGACAAGAGCTACCTTTTGTGCCAAAACCCAGTGTCGGGTGCAGCATCAAATGGCACCCATGAAGAGCGTATTGCATTGTCATGTGCTGGAATATAGATGTTTTTCCCCCTTAAATTGAAGGTTGAACATGGGGATTGAGGTGAGCCATGCTCTCTACTACTAGAAGTATGGAAGCACACACATAGTAGATTTATGATAGCTAATTTCACATAGTAGATTTATGATAGCTAATTTATAATGTAATTTTTAAGGGAAATAGATGCAGTTGAGGCCTTGTGGAGCTGATTCTTAACGTTGTGGGGGCTGTTCAACTTGAGAGTTGCAAAACTAGACATGAATGGCGTGGATAGTGTTATGTTGTGTGCTGGTGTCTCATCTTGGCCGGAAAAAGAAAAACTGATGGATGTAACTGGTATTTGTGCAACAATGGGATAATGCACACAAGTACAATAACCCATTATTATGGCTAACACAACACCCACGGGTGAAAATTAA]
[+] EMBL CB681781 [ GCCACACAGCCCCACCCGCGCCATGTCACTCGCCACCGCCGCCGCCGGAGCGCAACCGTTCGTCCGCTCCTCCTCCTCCGCCGCCGCGGCGTCCTCGTCGCGGCCCCTGCTCGCCGTCGCCGCCGCCCGCCACCGCCGCCCGCATGGATCTCTCGCCGCCGCCGCCGCCGCGGCAAGGCGGCGTCGTCGTCGTCCGCTCCTCCAGGTGCGCGCGGCAAGGACGGAGTCCACGGGCGTCTCCGTCGGGTTCCGCGCGCCCCAGTTCGAGCTCCCGGAGCCACTGACGGGGAAGCTCTGGACATTGGATGACTTCGAAGGCAACCCCGCGCTGCTGGTTATGTTTGTATGTAATCACTGTCCATTCGTAAAGCATCTCAAAAAAGATATTGCGAAGCTCACCTCATTCTACATGGAGAAAGGGCTTGCTGCTGTTGCCATATCCTCGAACTCAATTGTGACACACCCACAGGATGGTCCTGATTACATAGCTGAGGAAGCAAAATTGTATAAATACTCTTTCCCGTATCTATATGATGAGTCTCAAGAAGTTGCTAAAGCTTTTCGAGCCGTCTGCACGCCAGAGTTTTACTTGTTCAAAAAGGATGGACGAAGGCCATTTGAGCTTTTCTACCATGGGCAGTTTGACGATTCAAGACCGAGTAACAACGTGCCAGTTACCGGAAGGGATTTAAGTCGTGCGATTGATTGTGCACTTAGTGGACAAGAGCTACCTTTTGTGCCAAAACCCAGTGTCGGGTGCAGC ]
[+] EMBL CA766422 [ TGCAGTTGAGGCCTTGTGGAGCTGATTCTTAACGTTGTGGGGGCTGTTCAACTTGAGAGTTGCAAAACTAGACATGAATGGCGTGGATAGTGTTATGTTGTGTGCTGGTGTCTCATCTTGGCCGGAAAAAGAAAAACTGATGGATGTAACTGGTATTTGTGCAACAATGGGATAATGCACACAAGTACAATAACCCATTATTATGGCTAGCACAACACCCACGGGNGAAAATTA ]
consensusID : consensus_6328#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 750 fasta sequence
[GGCAAGGACGGAGTCCACGGGCGTCTCCGTCGGGTTCCGCGCGCCCCAGTTCGAGCTCCCGGAGCCACTGACGGGGAAGCTCTGGACATTGGATGACTTCGAAGGCAACCCCGCGCTGCTGGTTATGTTTGTATGTAATCACTGTCCATTCGTAAAGCATCTCAAAAAAGATATTGCGAAGCTCACCTCATTCTACATGGAGAAAGGGCTTGCTGCTGTTGCCATATCCTCGAACTCAATTGTGACACACCCACAGGATGGTCCTGATTACATAGCTGAGGAAGCAAAATTGTATAAATACTCTTTCCCGTATCTATATGATGAGTCTCAAGAAGTTGCTAAAGCTTTTCGAGCCGTCTGCACGCCAGAGTTTTACTTGTTCAAAAAGGATGGACGAAGGCCATTTGAGCTTTTCTACCATGGGCAGTTTGACGATTCAAGACCGAGTAACAACGTGCCAGTTACCGGAAGGGATTTAAGTCGTGCGATTGATTGTGCACTTAGTGGACAAGAGCTACCTTTTGTGCCAAAACCCAGTGTCGGGTGCAGCATCAAATGGCACCCATGAAGAGCGTATTGCATTGTCATGTGCTGGAATATAGATGTTTTTCCCCCTTAAATTGAAGGTTGAACATGGGGATTGAGATGCAGTTGAGGCCTTGTGGAGCTGATTCTTAACGTTGTGGGGGCTGTTCAACTTGAGAGTTAGGAAACTAGACATGAATGGCGTGGATAGTGTTATTTGAAAGG]
[-] EMBL CB681782 [GGCAAGGACGGAGTCCACGGGCGTCTCCGTCGGGTTCCGCGCGCCCCAGTTCGAGCTCCCGGAGCCACTGACGGGGAAGCTCTGGACATTGGATGACTTCGAAGGCAACCCCGCGCTGCTGGTTATGTTTGTATGTAATCACTGTCCATTCGTAAAGCATCTCAAAAAAGATATTGCGAAGCTCACCTCATTCTACATGGAGAAAGGGCTTGCTGCTGTTGCCATATCCTCGAACTCAATTGTGACACACCCACAGGATGGTCCTGATTACATAGCTGAGGAAGCAAAATTGTATAAATACTCTTTCCCGTATCTATATGATGAGTCTCAAGAAGTTGCTAAAGCTTTTCGAGCCGTCTGCACGCCAGAGTTTTACTTGTTCAAAAAGGATGGACGAAGGCCATTTGAGCTTTTCTACCATGGGCAGTTTGACGATTCAAGACCGAGTAACAACGTGCCAGTTACCGGAAGGGATTTAAGTCGTGCGATTGATTGTGCACTTAGTGGACAAGAGCTACCTTTTGTGCCAAAACCCAGTGTCGGGTGCAGCATCAAATGGCACCCATGAAGAGCGTATTGCATTGTCATGTGCTGGAATATAGATGTTTTTCCCCCTTAAATTGAAGGTTGAACATGGGGATTGAGATGCAGTTGAGGCCTTGTGGAGCTGATTCTTAACGTTGTGGGGGCTGTTCAACTTGAGAGTTAGGAAACTAGACATGAATGGCGTGGATAGTGTTATTTGAAAGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6328#0 ACACGGTGCATCTCTCAGCCACACAGCCCCACCCGCGCCATGTCACTCGCCACCGCCGCC 60
consensus_6328#1 ------------------------------------------------------------
consensus_6328#0 GCCGGAGCGCAACCGTTCGTCCGCTCCTCCTCCTCCGCCGCCGCGGCGTCCTCGTCGCGG 120
consensus_6328#1 ------------------------------------------------------------
consensus_6328#0 CCCCTGCTCGCCGTCGCCGCCGCCCGCCACCGCCGCCCGCATGGATCTCTCGCCGCCGCC 180
consensus_6328#1 ------------------------------------------------------------
consensus_6328#0 GCCGCCGCGGCAAGGCGGCGTCGTCGTCGTCCGCTCCTCCAGGTGCGCGCGGCAAGGACG 240
consensus_6328#1 --------------------------------------------------GGCAAGGACG 10
**********
consensus_6328#0 GAGTCCACGGGCGTCTCCGTCGGGTTCCGCGCGCCCCAGTTCGAGCTCCCGGAGCCACTG 300
consensus_6328#1 GAGTCCACGGGCGTCTCCGTCGGGTTCCGCGCGCCCCAGTTCGAGCTCCCGGAGCCACTG 70
************************************************************
consensus_6328#0 ACGGGGAAGCTCTGGACATTGGATGACTTCGAAGGCAACCCCGCGCTGCTGGTTATGTTT 360
consensus_6328#1 ACGGGGAAGCTCTGGACATTGGATGACTTCGAAGGCAACCCCGCGCTGCTGGTTATGTTT 130
************************************************************
consensus_6328#0 GTATGTAATCACTGTCCATTCGTAAAGCATCTCAAAAAAGATATTGCGAAGCTCACCTCA 420
consensus_6328#1 GTATGTAATCACTGTCCATTCGTAAAGCATCTCAAAAAAGATATTGCGAAGCTCACCTCA 190
************************************************************
consensus_6328#0 TTCTACATGGAGAAAGGGCTTGCTGCTGTTGCCATATCCTCGAACTCAATTGTGACACAC 480
consensus_6328#1 TTCTACATGGAGAAAGGGCTTGCTGCTGTTGCCATATCCTCGAACTCAATTGTGACACAC 250
************************************************************
consensus_6328#0 CCACAGGATGGTCCTGATTACATAGCTGAGGAAGCAAAATTGTATAAATACTCTTTCCCG 540
consensus_6328#1 CCACAGGATGGTCCTGATTACATAGCTGAGGAAGCAAAATTGTATAAATACTCTTTCCCG 310
************************************************************
consensus_6328#0 TATCTATATGATGAGTCTCAAGAAGTTGCTAAAGCTTTTCGAGCCGTCTGCACGCCAGAG 600
consensus_6328#1 TATCTATATGATGAGTCTCAAGAAGTTGCTAAAGCTTTTCGAGCCGTCTGCACGCCAGAG 370
************************************************************
consensus_6328#0 TTTTACTTGTTCAAAAAGGATGGACGAAGGCCATTTGAGCTTTTCTACCATGGGCAGTTT 660
consensus_6328#1 TTTTACTTGTTCAAAAAGGATGGACGAAGGCCATTTGAGCTTTTCTACCATGGGCAGTTT 430
************************************************************
consensus_6328#0 GACGATTCAAGACCGAGTAACAACGTGCCAGTTACCGGAAGGGATTTAAGTCGTGCGATT 720
consensus_6328#1 GACGATTCAAGACCGAGTAACAACGTGCCAGTTACCGGAAGGGATTTAAGTCGTGCGATT 490
************************************************************
consensus_6328#0 GATTGTGCACTTAGTGGACAAGAGCTACCTTTTGTGCCAAAACCCAGTGTCGGGTGCAGC 780
consensus_6328#1 GATTGTGCACTTAGTGGACAAGAGCTACCTTTTGTGCCAAAACCCAGTGTCGGGTGCAGC 550
************************************************************
consensus_6328#0 ATCAAATGGCACCCATGAAGAGCGTATTGCATTGTCATGTGCTGGAATATAGATGTTTTT 840
consensus_6328#1 ATCAAATGGCACCCATGAAGAGCGTATTGCATTGTCATGTGCTGGAATATAGATGTTTTT 610
************************************************************
consensus_6328#0 CCCCCTTAAATTGAAGGTTGAACATGGGGATTGAGGTGAGCCATGCTCTCTACTACTAGA 900
consensus_6328#1 CCCCCTTAAATTGAAGGTTGAACATGGGGATTGAG------------------------- 645
***********************************
consensus_6328#0 AGTATGGAAGCACACACATAGTAGATTTATGATAGCTAATTTCACATAGTAGATTTATGA 960
consensus_6328#1 ------------------------------------------------------------
consensus_6328#0 TAGCTAATTTATAATGTAATTTTTAAGGGAAATAGATGCAGTTGAGGCCTTGTGGAGCTG 1020
consensus_6328#1 -----------------------------------ATGCAGTTGAGGCCTTGTGGAGCTG 670
*************************
consensus_6328#0 ATTCTTAACGTTGTGGGGGCTGTTCAACTTGAGAGTTGCAAAACTAGACATGAATGGCGT 1080
consensus_6328#1 ATTCTTAACGTTGTGGGGGCTGTTCAACTTGAGAGTTAGGAAACTAGACATGAATGGCGT 730
************************************* ********************
consensus_6328#0 GGATAGTGTTATGTTGTGTGCTGGTGTCTCATCTTGGCCGGAAAAAGAAAAACTGATGGA 1140
consensus_6328#1 GGATAGTGTTATTTGAAAGG---------------------------------------- 750
************ * *
consensus_6328#0 TGTAACTGGTATTTGTGCAACAATGGGATAATGCACACAAGTACAATAACCCATTATTAT 1200
consensus_6328#1 ------------------------------------------------------------
consensus_6328#0 GGCTAACACAACACCCACGGGTGAAAATTAA 1231
consensus_6328#1 -------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||