These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6333#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 551 fasta sequence [GCCTCCAAGGGGGTCGGCGCATGGCAAGCAGAGGGGAGAAATTCGACATATGAGGCCTTACAGCGTTGGCAACTACTGCTGCGATGGCGATGGCACGATGATGACCGAGGCAAAGAACACATCGAAGACTACGAGGCAGCCGAGCAGCAGGCTGACGACGACACCG-GCGCCGCCGCCGCGGAGGACGGTGGCGGCGGCGGACGAGCTGGTGGCGCTGGCGCGCTCGAACTGCAGCGAGTCGACGGCGAGCGGCATGTTCTCCTGGTCCGGGCTGCACCGCGGCGGCGCGCCGCCGGCCGCCGCCGACTCGGTGGGGCGCGCGCTGTAGAGCATGGCGCGCAGCACGGCGGACACGG-TGGNGGATGTACACCGTCTTGTTCTTGGCCAGCAGCCACGTCAGCCCCATCAGCTGGCAGTCGCGCCCCAGCATCCGCCGCGCCCGGTCGCCGCCGGCGACCTCCCGGCTCACGTTCCCCTTCAGCTGCACCACCACAAGAACACAGGTGAGACGAAGAAGAAACTGCATTTAATGTGCTCCATGCAAGCAACGT] [+] EMBL CF325163 [GCCTCCAAGGGGGTCGGCGCATGGCAAGCAGAGGGGAGAAATTCGACATATGAGGCCTTACAGCGTTGGCAACTACTGCTGCGATGGCGATGGCACGATGATGACCGAGGCAAAGAACACATCGAAGACTACGAGGCAGCCGAGCAGCAGGCTGACGACGACACCG GCGCCGCCGCCGCGGAGGACGGTGGCGGCGGCGGACGAGCTGGTGGCGCTGGCGCGCTCGAACTGCAGCGAGTCGACGGCGAGCGGCATGTTCTCCTGGTCCGGGCTGCACCGCGGCGGCGCGCCGCCGGCCGCCGCCGACTCGGTGGGGCGCGCGCTGTAGAGCATGGCGCGCAGCACGGCGGACACGG TGGNGGATGTACACCGTCTTGTTCTTGGCCAGCAGCCACGTCAGCCCCATCAGCTGGCAGTCGCGCCCCAGCATCCGCCGCGCCCGGTCGCCGCCGGCGACCTCCCGGCTCACGTTCCCCTTCAGCTGCACCACCACAAGAACACAGGTGAGACGAAGAAGAAACTGCATTTAATGTGCTCCATGCAAGCAACGT] [+] EMBL CF325138 [GCCTCCAAGGGGGTCGGCGCATGGCAAGCAGAGGGGAGAAATTCGACATATGAGGCCTTACAGCGTTGGCAACTACTGCTGCGATGGCGATGGCACGATGATGACCGAGGCAAAGAACACATCGAAGACTACGAGGCAGCCGAGCAGCAGGCTGACGACGACACCGNGCGCCGCCGCCGCGGAGGACGGTGGCGGCGGCGGACGAGCTGGTGGCGCTGGCGCGCTCGAACTGCAGCGAGTCGACGGCGAGCGGCATGTTCTCCTGGTCCGGGCTGANCCGCGGCGGCGCGCCGCCGGCCGCCGCCGACTCGGTGGGGCGCGCGCTGTAGAGCATGGCGCGCAGCACGGCGGACACGGNTGG GGATGTACACCGTCTTGTTCTTGGCCAGCAGCCACGTCAGCCCCATCAGCTGGCAGTCGCGCCCCAGCATCCGCCGCGCCCGGTCGCCGCCGGCGACCTCCCGGCTCACGTTCCCCTTCAGCTGCACCACCACAAGAACACAGGTGAGACGAAGAAGAAACTGCATTTAATGTGCTCCATGCAAGCA ] consensusID : consensus_6333#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 525 fasta sequence [GAGACGCATAAACACTGCAAATCACATCTCACTCTAATCCGCAGGTCACTAATACTATGCAACAGAAGCTACTAATTAACTAACAACGCCTACAAAATTAAACACTATCGATTATCGACAAGGCTTAGGTTCTTAAATTAATCAGTTGCCACCCTTAATTTACAAGAACACATCGAAGACTACGAGGCAGCCGAGCAGCAGGCTGACGACGACACCGGCGCCGCCGCCGCGGAGGACGGTGGCGGCGGCGGACGAGCTGGTGGCGCTGGCGCGCTCGAACTGCAGCGAGTCGACGGCGAGCGGCATGTTCTCCTGGTCCGGGCTGCACCGCGGGGGCGCCGACGGCGCGCCGACTCGGTGGGGCGCGCGCTGTAAAGCATGGCGCGCAGCACAGGCGGANCACGGNTGGGGATGTACACCGTCTTGTTCTGTGGCCAGCAGCCACCGTCAGCACCCATCAGCTGGACAGTCAGAGCCCCAAACATCCGNCGAGCCCGGTCGCCGCGGANANACTCCCGGATCACG] [-] EMBL BI805840 [GAGACGCATAAACACTGCAAATCACATCTCACTCTAATCCGCAGGTCACTAATACTATGCAACAGAAGCTACTAATTAACTAACAACGCCTACAAAATTAAACACTATCGATTATCGACAAGGCTTAGGTTCTTAAATTAATCAGTTGCCACCCTTAATTTACAAGAACACATCGAAGACTACGAGGCAGCCGAGCAGCAGGCTGACGACGACACCGGCGCCGCCGCCGCGGAGGACGGTGGCGGCGGCGGACGAGCTGGTGGCGCTGGCGCGCTCGAACTGCAGCGAGTCGACGGCGAGCGGCATGTTCTCCTGGTCCGGGCTGCACCGCGGGGGCGCCGACGGCGCGCCGACTCGGTGGGGCGCGCGCTGTAAAGCATGGCGCGCAGCACAGGCGGANCACGGNTGGGGATGTACACCGTCTTGTTCTGTGGCCAGCAGCCACCGTCAGCACCCATCAGCTGGACAGTCAGAGCCCCAAACATCCGNCGAGCCCGGTCGCCGCGGANANACTCCCGGATCACG] consensusID : consensus_6333#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 351 fasta sequence [TTTTTTTTTTTTTATCGACAAGGCTTAGGTTCTTAAATTAATCAGTTCCACCCTTAATTTACAAGAACACATCGAAGACTACGAGCAACCGAGCAGCAGGCTGACGACGACACCGCGCCGCCGCCGCGGAGGACGGTGNCGNCGGCGGACGAGCTTGGCTGNTGGCGCGCTCGAACTGCAGCGAGTCGACGGCGAGCGGCATGTTCTCCTGGTCCGGGCTGCNANCCGGCGGCGCGCCGCCGGCCGCCGCCGACTCGGTGGGGCGCGCGCTGTAGAGCATGGCGCGCAGCACGGCGGACACGGTGGGGATGTACACCGTCTTGTTCTTGGCCAGCAGCCACGTCAGCCCCA] [-] EMBL AU162252 [TTTTTTTTTTTTTATCGACAAGGCTTAGGTTCTTAAATTAATCAGTTCCACCCTTAATTTACAAGAACACATCGAAGACTACGAGCAACCGAGCAGCAGGCTGACGACGACACCGCGCCGCCGCCGCGGAGGACGGTGNCGNCGGCGGACGAGCTTGGCTGNTGGCGCGCTCGAACTGCAGCGAGTCGACGGCGAGCGGCATGTTCTCCTGGTCCGGGCTGCNANCCGGCGGCGCGCCGCCGGCCGCCGCCGACTCGGTGGGGCGCGCGCTGTAGAGCATGGCGCGCAGCACGGCGGACACGGTGGGGATGTACACCGTCTTGTTCTTGGCCAGCAGCCACGTCAGCCCCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6333#1 GAGACGCATAAACACTGCAAATCACATCTCACTCTAATCCGCAGGTCACTAATACTATGC 60 consensus_6333#2 ------------------------------------------------------------ consensus_6333#0 -----------------------------------GCCTCCAAGGGGGTCGGCGCATGGC 25 consensus_6333#1 AA-CAGAAGCTACTAATT-AACTAACAACGCCT-ACAAAATTAAACACTATCGATTATCG 117 consensus_6333#2 -------------------------------------------TTTTTTTTTTTTTATCG 17 consensus_6333#0 AAGCAGAGGGGAGAAATTCGACATATGAGGCCTTACAGCGTTGGCAACTA----CTGCTG 81 * * * consensus_6333#1 ACAAGGCTTAGGTTCTTAAATTAATCAGTTGCCACCCTTAATTTACAAGAACACATCGAA 177 consensus_6333#2 ACAAGGCTTAGGTTCTTAAATTAATCAGTT-CCACCCTTAATTTACAAGAACACATCGAA 76 consensus_6333#0 CGATGGCGATGGCACGATGATGACCGAGGC---------------AAAGAACACATCGAA 126 * *** ** * ** * ** ************** consensus_6333#1 GACTACGAGGCAGCCGAGCAGCAGGCTGACGACGACACCGGCGCCGCCGCCGCGGAGGAC 237 consensus_6333#2 GACTACGAG-CAACCGAGCAGCAGGCTGACGACGACACCG-CGCCGCCGCCGCGGAGGAC 134 consensus_6333#0 GACTACGAGGCAGCCGAGCAGCAGGCTGACGACGACACCGGCGCCGCCGCCGCGGAGGAC 186 ********* ** *************************** ******************* consensus_6333#1 GGTGGCGGCGGCGGACGAGCTGGTGGCGCTGGCGCGCTCGAACTGCAGCGAGTCGACGGC 297 consensus_6333#2 GGTGNCGNCGGCGGACGAGCTTG-GCTGNTGGCGCGCTCGAACTGCAGCGAGTCGACGGC 193 consensus_6333#0 GGTGGCGGCGGCGGACGAGCTGGTGGCGCTGGCGCGCTCGAACTGCAGCGAGTCGACGGC 246 **** ** ************* * * * ******************************* consensus_6333#1 GAGCGGCATGTTCTCCTGGTCCGGGCTGC--ACCGCGGGGGCGCCGACGGC--GCGCCGA 353 consensus_6333#2 GAGCGGCATGTTCTCCTGGTCCGGGCTGCNANCCGGCGGCGCGCCGCCGGCCGCCGCCGA 253 consensus_6333#0 GAGCGGCATGTTCTCCTGGTCCGGGCTGCACCGCGGCGGCGCGCCGCCGGCCGCCGCCGA 306 ***************************** ** ** ****** **** ****** consensus_6333#1 CTCGGTGGGGCGCGCGCTGTAAAGCATGGCGCGCAGCACAGGCGGANCACGGNTGGGGAT 413 consensus_6333#2 CTCGGTGGGGCGCGCGCTGTAGAGCATGGCGCGCAGCAC-GGCGGAC-ACGGT-GGGGAT 310 consensus_6333#0 CTCGGTGGGGCGCGCGCTGTAGAGCATGGCGCGCAGCAC-GGCGGAC-ACGGTGGNGGAT 364 ********************* ***************** ****** **** * **** consensus_6333#1 GTACACCGTCTTGTTCTGTGGCCAGCAGCCACCGTCAGCACCCATCAGCTGGACAGTCAG 473 consensus_6333#2 GTACACCGTCTTGTTCT-TGGCCAGCAGCCAC-GTCAGC-CCCA---------------- 351 consensus_6333#0 GTACACCGTCTTGTTCT-TGGCCAGCAGCCAC-GTCAGC-CCCATCAGCTGG-CAGTC-G 419 ***************** ************** ****** **** consensus_6333#1 AGCCCCAAACATCCGNCGAGCCCGGTCGCCGCGGANANACTCCCGGATCACG-------- 525 consensus_6333#2 ------------------------------------------------------------ consensus_6333#0 CGCCCCAG-CATCCGCCGCGCCCGGTCGCCGCCGGCGACCTCCCGGCTCACGTTCCCCTT 478 consensus_6333#1 ------------------------------------------------------------ consensus_6333#2 ------------------------------------------------------------ consensus_6333#0 CAGCTGCACCACCACAAGAACACAGGTGAGACGAAGAAGAAACTGCATTTAATGTGCTCC 538 consensus_6333#1 ------------- consensus_6333#2 ------------- consensus_6333#0 ATGCAAGCAACGT 551 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||