These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6338#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 886 fasta sequence [CCATCCATAGCTATCCAAGAGCCCCAAATCAGATGCTCTCTCCTGCCACCACCTTCTCCTCCTCCTCCTCCTCCTCGTCGCCGTCGCGCGCCCACGCTCGCGCTCCCACCCGCTTCGCGGTCGCAGCATCCGCGCGCGCCGCACGGTTCCGCCCCGCGCGCGCCATGGCCGCCTCCGACGACCCCCGCGGCGGGAGGTCCGTCGCCGTCGTCGGCGCCGGCGTCAGTGGGCTCGCGGCGGCGTACAGGCTGAGGAAGCGCGGCGTGCAGGTGACGGTGTTCGAGGCGGCCGACAGGGCGGGTGGGAAGATACGGACCAACTCCGAGGGCGGGTTCATCTGGGACGAAGGGGCCAACACCATGACAGAGAGTGAATTGGAGGCAAGCAGGCTTATTGACGATCTTGGCCTACAAGGCAAACAGCAGTATCCTAACTCACAACACAAGCGTTACATTGTCAAAGATGGAGCACCAACACTGATTCCCTCAGATCCCATTGCGCTCATGAAAAGCACTGTTCTTTCTACAAAATCAAAGCTCAAGCTATTTCTGGAACCATTTCTCTATGAGAAATCTAGCAGAAGGACCTCGGGAAAAGTGTCTGATGAACATTTAAGTGAGAGTGTTGCAAGTTTCTTTGAACGCCACTTTGGAAAAGAGGTTGTTGATTATCTTATTGATCCATTTGTGGCTGGAACAAGCGGAGGAGATCCTGAGTCATTATCAATTCGTCATGCATTTCCAGCATTATGGAATTTGGAGAATAAGTATGGCTCTGTCATTGCTGGTGCCATCTTGTCCAAACTATCCACTAAGGGTGATTCAGTGAAGACAGGAGGTGCTTCGCCAGGGAAAGGAAGGAATAAACGTGTGTCATTTTCATTTCA] [+] EMBL CB657746 [CCATCCATAGCTATCCAAGAGCCCCAAATCAGATGCTCTCTCCTGCCACCACCTTCTCCTCCTCCTCCTCCTCCTCGTCGCCGTCGCGCGCCCACGCTCGCGCTCCCACCCGCTTCGCGGTCGCAGCATCCGCGCGCGCCGCACGGTTCCGCCCCGCGCGCGCCATGGCCGCCTCCGACGACCCCCGCGGCGGGAGGTCCGTCGCCGTCGTCGGCGCCGGCGTCAGTGGGCTCGCGGCGGCGTACAGGCTGAGGAAGCGCGGCGTGCAGGTGACGGTGTTCGAGGCGGCCGACAGGGCGGGTGGGAAGATACGGACCAACTCCGAGGGCGGGTTCATCTGGGACGAAGGGGCCAACACCATGACAGAGAGTGAATTGGAGGCAAGCAGGCTTATTGACGATCTTGGCCTACAAGGCAAACAGCAGTATCCTAACTCACAACACAAGCGTTACATTGTCAAAGATGGAGCACCAACACTGATTCCCTCAGATCCCATTGCGCTCATGAAAAGCACTGTTCTTTCTACAAAATCAAAGCTCAAGCTATTTCTGGAACCATTTCTCTATGAGAAATCTAGCAGAAGGACCTCGGGAAAAGTGTCTGATGAACATTTAAGTGAGAGTGTTGCAAGTTTCTTTGAACGCCACTTTGGAAAAGAGGTTGTTGATTATCTTATTGATCCATTTGTGGCTGGAACAAGCGGAGGAGATCCTG ] [+] EMBL CB678131 [ CCGCCTACCCCCGCGGCGGGAGGTCCGTCGCCGTCGTCGGCGCCGGCGTCAGTGGGCTCGCGGCGGCGTACAGGCTGAGGAAGCGCGGCGTGCAGGTGACGGTGTTCGAGGCGGCCGACAGGGCGGGTGGGAAGATACGGACCAACTCCGAGGGCGGGTTCATCTGGGACGAAGGGGCCAACACCATGACAGAGAGTGAATTGGAGGCAAGCAGGCTTATTGACGATCTTGGCCTACAAGGCAAACAGCAGTATCCTAACTCACAACACAAGCGTTACATTGTCAAAGATGGAGCACCAACACTGATTCCCTCAGATCCCATTGCGCTCATGAAAAGCACTGTTCTTTCTACAAAATCAAAGCTCAAGCTATTTCTGGAACCATTTCTCTATGAGAAATCTAGCAGAAGGACCTCGGGAAAAGTGTCTGATGAACATTTAAGTGAGAGTGTTGCAAGTTTCTTTGAACGCCACTTTGGAAAAGAGGTTGTTGATTATCTTATTGATCCATTTGTGGCTGGAACAAGCGGAGGAGATCCTGAGTCATTATCAATTCGTCATGCATTTCCAGCATTATGGAATTTGGAGAATAAGTATGGCTCTGTCATTGCTGGTGCCATCTTGTCCAAACTATCCACTAAGGGTGATTCAGTGAAGACAGGAGGTGCTTCGCCAGGGAAAGGAAGGAATAAACGTGTGTCATTTTCATTTCA] consensusID : consensus_6338#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 825 fasta sequence [GACGAACCCCGCACAAGACAACAAGTAAATCCCCATCCATAGCTATCCAAGAGCCCCAAATCAGATGCTCTCTCCTGCCACCACCTTCTCCTCCTCCTCCTCCTCCTCGTCGCCGTCGCGCGCCCACGCTCGCGCTCTCACCCGCTTCGC-GTCGCAGCATCCGCGCGCGCCGCACGGTTCCGCCCCGCGCGCGCCATGGCCGCCTCCGACGACCCCCGCGGCGGGAGGTCCGTCGCCGTCGTCGGCGCCGGCGTCAGTGGGCTCGCGGCGGCGTACAGGCTGAGGAAGCGCGGCGTGCAGGTGACGGTGTTCGAGGCGGCCGACAGGGCGGGTGGGAAGATACGGACCAACTCCGAGGGCGGGTTCATCTGGGACGAAGGGGCCAACACCATGGTGAGCGCGCTTTGGTGTGCCTCGCTGCTTCTGTTTGATCACAATCTCGGGCTGTGTTGGTCTGCATTGCTGCAAATGCTGCTTCTGTATATTTTGGATTGTGGCGCACTGGCGCTGCTGCGGCTATTTGAGGGCTGGAGCACACTAGCGAGTAGTGCTCCTTGGTGCGCAGGCTGAGGAAACTTGTGTTTGTGAACGAAATGCAAGCTGCTCACTAATGCAGACAGTTGTTCCTGCAAATGGAGAAGTGTTTTCTTCTGCATTCGTATCCCACAACAGACGTGAACCCTTTCTGCTATGAGCATCATTGAACACCGTTATGTAACTTATCATAGCCTGATTCGATTTCATTCACCATGATCTATAACTATTATACTTACCACATTAGTTACTTTGTACTACTCTTAGTAAAATAAATAAATTATTTTAATA] [+] EMBL C97940 [GACGAACCCCGCACAAGACAACAAGTAAATCCCCATCCATAGCTATCCAAGAGCCCCAAATCAGATGCTCTCTCCTGCCACCACCTTCTCCTCCTCCTCCTCCTCCTCGTCGCCGTCGCGCGCCCACGCTCGCGCTCTCACCCGCTTCGC GTCGCAGCATCCGCGCGCGCCGCACGGTTCCGCCCCGCGCGCGCCATGGCCGCCTCCGACGACCCCCGCGGCGGGAGGTCCGTCGCCGTCGTCGGCGCCGGCGTCAGTGGGCTCGCGGCGGCGTACAGGCTGAGGAAGCGCGGCGTGCAGGTGACGGTGTTCGAGGCGGCCGACAGGGCGGGTGGGAAGATACGGACCAACTCCGAGGGCGGG ] [+] EMBL AK108365 [ CTCTCTCCTGCCACCACCTTCTCCTCCTCCTCCTCCTCCTCGTCGCCGTCGCGCGCCCACGCTCGCGCTCCCACCCGCTTCGCGGTCGCAGCACCCGCGCGCGCCGCACGGTTCCGCCCCGCGCGCGCCATGGCCGCCTCCGACGACCCCCGCGGCGGGAGGTCCGTCGCCGTCGTCGGCGCCGGCGTCAGTGGGCTCGCGGCGGCGTACAGGCTGAGGAAGCGCGGCGTGCAGGTGACGGTGTTCGAGGCGGCCGACAGGGCGGGTGGGAAGATACGGACCAACTCCGAGGGCGGGTTCATCTGGGACGAAGGGGCCAACACCATGGTGAGCGCGCTTTGGTGTGCCTCGCTGCTTCTGTTTGATCACAATCTCGGGCTGTGTTGGTCTGCATTGCTGCAAATGCTGCTTCTGTATATTTTGGATTGTGGCGCACTGGCGCTGCTGCGGCTATTTGAGGGCTGGAGCACACTAGCGAGTAGTGCTCCTTGGTGCGCAGGCTGAGGAAACTTGTGTTTGTGAACGAAATGCAAGCTGCTCACTAATGCAGACAGTTGTTCCTGCAAATGGAGAAGTGTTTTCTTCTGCATTCGTATCCCACAACAGACGTGAACCCTTTCTGCTATGAGCATCATTGAACACCGTTATGTAACTTATCATAGCCTGATTCGATTTCATTCACCATGATCTATAACTATTATACTTACCACATTAGTTACTTTGTACTACTCTTAGTAAAATAAATAAATTATTTTAATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6338#0 --------------------------------CCATCCATAGCTATCCAAGAGCCCCAAA 28 consensus_6338#1 GACGAACCCCGCACAAGACAACAAGTAAATCCCCATCCATAGCTATCCAAGAGCCCCAAA 60 **************************** consensus_6338#0 TCAGATGCTCTCTCCTGCCACCACCTTCTCCTCCTCCTCCTCCTCCTCGTCGCCGTCGCG 88 consensus_6338#1 TCAGATGCTCTCTCCTGCCACCACCTTCTCCTCCTCCTCCTCCTCCTCGTCGCCGTCGCG 120 ************************************************************ consensus_6338#0 CGCCCACGCTCGCGCTCCCACCCGCTTCGCGGTCGCAGCATCCGCGCGCGCCGCACGGTT 148 consensus_6338#1 CGCCCACGCTCGCGCTCTCACCCGCTTCGCG-TCGCAGCATCCGCGCGCGCCGCACGGTT 179 ***************** ************* **************************** consensus_6338#0 CCGCCCCGCGCGCGCCATGGCCGCCTCCGACGACCCCCGCGGCGGGAGGTCCGTCGCCGT 208 consensus_6338#1 CCGCCCCGCGCGCGCCATGGCCGCCTCCGACGACCCCCGCGGCGGGAGGTCCGTCGCCGT 239 ************************************************************ consensus_6338#0 CGTCGGCGCCGGCGTCAGTGGGCTCGCGGCGGCGTACAGGCTGAGGAAGCGCGGCGTGCA 268 consensus_6338#1 CGTCGGCGCCGGCGTCAGTGGGCTCGCGGCGGCGTACAGGCTGAGGAAGCGCGGCGTGCA 299 ************************************************************ consensus_6338#0 GGTGACGGTGTTCGAGGCGGCCGACAGGGCGGGTGGGAAGATACGGACCAACTCCGAGGG 328 consensus_6338#1 GGTGACGGTGTTCGAGGCGGCCGACAGGGCGGGTGGGAAGATACGGACCAACTCCGAGGG 359 ************************************************************ consensus_6338#0 CGGGTTCATCTGGGACGAAGGGGCCAACACCATGACAGAGAGTGAATTGGAGGCAAGCAG 388 consensus_6338#1 CGGGTTCATCTGGGACGAAGGGGCCAACACCATGGT-GAGCGCGCTTTGGTGT------G 412 ********************************** *** * * **** * * consensus_6338#0 GCTTATTGACGATCTTGGCCTACAAGG-CAAACAGCAGTATCCTAACTCACAACACAAGC 447 consensus_6338#1 CCTCGCTGCTTCTGTTTGATCACAATCTCGGGCTGTGTTGGTCTGCATTGC--TGCAAAT 470 ** ** * ** * **** * * * * ** * * *** consensus_6338#0 GTTACAT-TGTCAAAGATGGAGCACCA-ACACTGATTCCCTCAGATCCCATTGCGCTCAT 505 consensus_6338#1 GCTGCTTCTGTATATTTTGGATTGTGGCGCACTGGCGCTGCTGCGGCTATTTGAGGGC-T 529 * * * * *** * **** ***** * * *** * * * consensus_6338#0 GAAAAGCACTGTTCTTTCTACAAAATCAAAGCTCAAGCTATTTCTGGAACCATTTCTCTA 565 consensus_6338#1 GGAGCACACTAGCGAGTAGTGCTCCTTGGTGCGCAGGCTGA----GGAAACTTGTGTTTG 585 * * **** * * ** ** *** **** * * * * * consensus_6338#0 TGAGAAATCTAGCAGAAGGACCTCGGGAAAAGTGTCTGATGAACATTTAAGTGAGAGTGT 625 consensus_6338#1 TGAACGA---AATGCAAGCTGCTCACTAATGCAGACAGTTGTTCCTGCAAATG-GAGAAG 641 *** * * *** *** ** * * * ** * * ** ** *** consensus_6338#0 TGCAAGTTTCTTTGAACGCCACTTTGGAAAAGAGGTTGTTGATTATCTTATTGATC--CA 683 consensus_6338#1 TGTTTTCTTCTGCATTCGT-ATCCCACAACAGACGTGAACCCTTTCTGCTATGAGCATCA 700 ** **** ** * ** *** ** ** *** * ** consensus_6338#0 TTTGTGGCTGGAACA-AGCGGAGGAGATCCTGAGTCATTATCAATTCGTCATGCATTTCC 742 consensus_6338#1 TTGAACACCGTTATGTAACTTATCATAGCCTGATTCGATTTCA-TTCACCATGA---TCT 756 ** * * * * * * * * ***** ** * *** *** **** ** consensus_6338#0 AGCATTATGGAATTTGGAGAATAAGTATGGCTCTGTCATTGCTGGTGCCATCTTGTCCAA 802 consensus_6338#1 ATAACTATTATACTTACCACATTAGTT--ACTTTGT-ACTACTCTTAGTAAAATAAATAA 813 * * *** * ** ** *** ** *** * * ** * * * ** consensus_6338#0 ACTATCCACTAAGGGTGATTCAGTGAAGACAGGAGGTGCTTCGCCAGGGAAAGGAAGGAA 862 consensus_6338#1 ATTATTT--TAATA---------------------------------------------- 825 * *** *** consensus_6338#0 TAAACGTGTGTCATTTTCATTTCA 886 consensus_6338#1 ------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||