These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6341#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 969 fasta sequence [AACAAACATCCATCACTGCAGCAAATCATCATCATCATCATCATCACATACACTAATCGATCGATCAGCAGCAGATAGCTAATTAAGCTTGTTTGATTAGTTTCGCCGGAGATCGATCGATATGGAGAGGGTGGCGAAGCTGTCGACGGAGAAGGCGGTGGTGATCTTCACGGCGAGCAACTGCCCGATGTGCCACACGGTGGTGAGCCTCTTCTCCGACCTCGGCGTCGGCGCCGCCGTCCACGAGCTCGACCGCGACCCGCTCCACGGCCGGGACATGGAGCGCGACCTCGCCCGCCGCCTCGGCCGCTCCCCGCCCGTCCCCGCCGTCTTCATCGCCGGCAAGCTCGTCGGCTCCACCGACCGCGTCATGTCGCTCCACCTCGCCGGCAAGCTCGTCCCCATGCTCAAGGCCGCCGGCGCCATTTGGCTCTAGATCGCTCATCATAATTAAGCTCAATTAATTAATTAACCTTTCTAAACTTCACTGTTTTAATCGCTACTACATTCGTTTTAAAATATAAAAATATAGAAGATTCTTATATTTTAAGATGGAGGGGGTATATTTTTACTACTACCGTTATATATATTATATATATGTTATTTACACATATGCAATGCACCTTTGTATTGCATGCACGTGTGTAAAAAAAAGGCACACATACGAGTTTACCACTTACGCGAGTGACTGAGAAGTACTATATATATCTTATCTAAGAGAGATTATCTAAGAGAGACTATACTCACCTGAGGACTGCCAATATTTAATTGTTAGTTTGATATACATAAAGGGTGAGTGAGTTTTGCCGCTAGCTAGCATTAACTAGTAGCAATTACATATGAGGGCGAGGAATATATATAGCGAGTCTTTTACATGTAAAATAGGCTTTAATGTTATCCCTCTCCAGCTCTTTTTTCCAATGAGAGCTGTGTTTTGTAACCTCGTGATCGGGAATATAATGAAGCATT] [+] EMBL AK063610 [AACAAACATCCATCACTGCAGCAAATCATCATCATCATCATCATCACATACACTAATCGATCGATCAGCAGCAGATAGCTAATTAAGCTTGTTTGATTAGTTTCGCCGGAGATCGATCGATATGGAGAGGGTGGCGAAGCTGTCGACGGAGAAGGCGGTGGTGATCTTCACGGCGAGCAACTGCCCGATGTGCCACACGGTGGTGAGCCTCTTCTCCGACCTCGGCGTCGGCGCCGCCGTCCACGAGCTCGACCGCGACCCGCTCCACGGCCGGGACATGGAGCGCGACCTCGCCCGCCGCCTCGGCCGCTCCCCGCCCGTCCCCGCCGTCTTCATCGCCGGCAAGCTCGTCGGCTCCACCGACCGCGTCATGTCGCTCCACCTCGCCGGCAAGCTCGTCCCCATGCTCAAGGCCGCCGGCGCCATTTGGCTCTAGATCGCTCATCATAATTAAGCTCAATTAATTAATTAACCTTTCTAAACTTCACTGTTTTAATCGCTACTACATTCGTTTTAAAATATAAAAATATAGAAGATTCTTATATTTTAAGATGGAGGGGGTATATTTTTACTACTACCGTTATATATATTATATATATGTTATTTACACATATGCAATGCACCTTTGTATTGCATGCACGTGTGTAAAAAAAAGGCACACATACGAGTTTACCACTTACGCGAGTGACTGAGAAGTACTATATATATCTTATCTAAGAGAGATTATCTAAGAGAGACTATACTCACCTGAGGACTGCCAATATTTAATTGTTAGTTTGATATACATAAAGGGTGAGTGAGTTTTGCCGCTAGCTAGCATTAACTAGTAGCAATTACATATGAGGGCGAGGAATATATATAGCGAGTCTTTTACATGTAAAATAGGCTTTAATGTTATCCCTCTCCAGCTCTTTTTTCCAATGAGAGCTGTGTTTTGTAACCTCGTGATCGGGAATATAATGAAGCATT] [-] EMBL BI118730 [ TCACTGCAGCAAATCATCATCATCATCATCATCACATACACTAATCGATCGATCAGCAGCAGATAGCTAATTAAGCTTGTTTGATTAGTTTCGCCGGAGATCGATCGATATGGAGAGGGTGGCGAAGCTGTCGACGGAGAAGGCGGTGGTGATCTTCACGGCGAGCAACTGCCCGATGTGCCACACGGTGGTGAGCCTCTTCTCCGACCTCGGCGTCGGCGCCACCGTCCACGAGCTCGACCGCGACCCGCTCCA ] consensusID : consensus_6341#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 589 fasta sequence [TTCCAAATCATCATCTCAACTTCTCAAGCACACAGTGATCGAGAAGCTACTGGAAGCATCTAGAAGGGGTTCCAGGTCTCGATCGATGGAGA-GGGTGGCGAAGCTGGCGTCGGAGAGGGCGGTGGTGGTGTTCACGGCGAGCAACTGCGGCATGTGCCACGCCGTGACGAGCCTCCTCGTCGGCGAGCTGGGCGTCAACGCCGCCGTGCACGAGCTCGACAAGGACCCCCGCGGCAGGGACATGGAGAGGGAGCTCGCCAGGAGGCTCAACGGCGGCGGCGGCGGCGGCCGCGCCCTGCCGGCGGTGTTCGTCGGAGGCAACCTCGTCGGCGGCGCCAACCGGGTCATGTCGCTCCACCTCGCCGGCGAGCTCGTCCCCATGCTCAAGAACGCCGGCGCGCTCTGGCTCTAGTGTATATACGTGTGTGCATGCAGAATGCAGTTAATGCAGCGAATTAAGCCAGGTTTTTTATGTCCTCCTGTGCTGATGAGAATAAATCAAATCGATCGATCGAGTGGTGTAATGGTGAAGTTGTTGTAAATGTCGTCCATTTCGATAAATAAATTTAGATCTGATGAAAATGTTCTA] [+] EMBL AK108017 [TTCCAAATCATCATCTCAACTTCTCAAGCACACAGTGATCGAGAAGCTACTGGAAGCATCTAGAAGGGGTTCCAGGTCTCGATCGATGGAGA GGGTGGCGAAGCTGGCGTCGGAGAGGGCGGTGGTGGTGTTCACGGCGAGCAACTGCGGCATGTGCCACGCCGTGACGAGCCTCCTCGTCGGCGAGCTGGGCGTCAACGCCGCCGTGCACGAGCTCGACAAGGACCCCCGCGGCAGGGACATGGAGAGGGAGCTCGCCAGGAGGCTCAACGGCGGCGGCGGCGGCGGCCGCGCCCTGCCGGCGGTGTTCGTCGGAGGCAACCTCGTCGGCGGCGCCAACCGGGTCATGTCGCTCCACCTCGCCGGCGAGCTCGTCCCCATGCTCAAGAACGCCGGCGCGCTCTGGCTCTAGTGTATATACGTGTGTGCATGCAGAATGCAGTTAATGCAGCGAATTAAGCCAGGTTTTTTATGTCCTCCTGTGCTGATGAGAATAAATCAAATCGATCGATCGAGTGGTGTAATGGTGAAGTTGTTGTAAATGTCGTCCATTTCGATAAATAAATTT ] [+] EMBL CB635015 [ ATCTCAACTTCTCAAGCACACAGTGATCGAGAAGCTACTGGAAGCATCTAGAAGGGGTTCCAGGTCTCGATCGATGGAGACCGGAGGCGAAGCTGGCGTCGGAGAGGGCGGTGGTGGTGTTCACGGCGAGCAACTGCGGCATGTGCCACGCCGTGACGAGCCTCCTCGTCGGCGAGCTGGGCGTCAACGCCGCCGTGCACGAGCTCGACAAGGACCCCCGCGGCAGGGACATGGAGAGGGAGCTCGCCAGGAGGCTCAACGGCGGCGGCGGCGGCGGCCGCGCCGTGCCGGCGGTGTTCGTCGGAGGCAACCTCGTCGGCGGCGCCAACCGGGTCATGTCGCTCCACCTCGCCGGCGAGCTCGTCCCCATGCTCAAGAACGCCGGCGCGCTCTGGCTCTAGTGTATATACGTGTGTGCATGCAGAATGCAGTTAATGCAGCGAATTAAGCCAGGTTTTTTATGTCCTCCTGTGCTGATGAGAATAAATCAAATCGATCGATCGAGTGGTGTAATGGTGAAGTTGTTGTAAATGTCGTCCATTTCGATAAATAAATTTAGATCTGATGAAAATGTTCTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6341#0 AACAAACATCCATCACTGCAGCAAATCATCATCATCATCATCATCACATACACTAATCGA 60 consensus_6341#1 ------------------TTCCAAATCATCATC----TCAACTTCTCAAGCACACAGTGA 38 ************ *** * ** ** *** * ** consensus_6341#0 TCGATCAGCAGCAGATAGCTAATTAAGCTTGTTTGATTAGTTTCGCCGGAGATCGATCGA 120 consensus_6341#1 TCGAGAAGCTACTGG---------AAGCATCTAGAAGGGGTT---CCAGGTCTCGATCGA 86 **** *** * * **** * * * *** ** * ******** consensus_6341#0 TATGGAGAGGGTGGCGAAGCTGTCGACGGAGAAGGCGGTGGTGATCTTCACGGCGAGCAA 180 consensus_6341#1 T--GGAGAGGGTGGCGAAGCTGGCGTCGGAGAGGGCGGTGGTGGTGTTCACGGCGAGCAA 144 * ******************* ** ****** ********** * ************** consensus_6341#0 CTGCCCGATGTGCCACACGGTGGTGAGCCTCTTCTCCGAC---CTCGGCGTCGGCGCCGC 237 consensus_6341#1 CTGCGGCATGTGCCACGCCGTGACGAGCCTCCTCGTCGGCGAGCTGGGCGTCAACGCCGC 204 **** ********* * *** ******* ** ** * ** ****** ****** consensus_6341#0 CGTCCACGAGCTCGACCGCGACCCGCTCCACGGCCGGGACATGGAGCGCGACCTCGCCCG 297 consensus_6341#1 CGTGCACGAGCTCGACAAGGACCC---CCGCGGCAGGGACATGGAGAGGGAGCTCGCCAG 261 *** ************ ***** ** **** *********** * ** ****** * consensus_6341#0 CCGCCTCGGCCGCTCC-----------CCGC-CCGTCCCCGCCGTCTTCATCGCCGGCAA 345 consensus_6341#1 GAGGCTCAACGGCGGCGGCGGCGGCGGCCGCGCCCTGCCGGCGGTGTTCGTCGGAGGCAA 321 * *** * ** * **** ** * ** ** ** *** *** ***** consensus_6341#0 GCTCGTCGGCTCCACCGACCGCGTCATGTCGCTCCACCTCGCCGGCAAGCTCGTCCCCAT 405 consensus_6341#1 CCTCGTCGGCGGCGCCAACCGGGTCATGTCGCTCCACCTCGCCGGCGAGCTCGTCCCCAT 381 ********* * ** **** ************************ ************* consensus_6341#0 GCTCAAGGCCGCCGGCGCCATTTGGCTCTAGATCGCTCAT-CATAATTAAGCTCAAT-TA 463 consensus_6341#1 GCTCAAGAACGCCGGCGCGCTCTGGCTCTAGTGTATATACGTGTGTGCATGCAGAATGCA 441 ******* ********* * ********* * * * ** *** * consensus_6341#0 ATTAATTAACCTTTCTAAACTTCACTGTTTTAATCGCTACTACATTCGTTTTAAAATATA 523 consensus_6341#1 GTTAATGCAGCGAATTAAGCCAGGTTTTTTATGTC-CTCCTGTGCTG----------ATG 490 ***** * * *** * * *** ** ** ** * ** consensus_6341#0 AAAATATAGAAGATTCTTATATTTTAAGATGGAGGGGGTATATTTTTACTACTACCGTTA 583 consensus_6341#1 AGAATAAATCAAATCGATCGATCGAGTGGTGTAATGGTGAAGTTGTTGTAAATGTCGTCC 550 * **** * * ** * ** * ** * ** * ** ** * * *** consensus_6341#0 TATATATTATATATATGTTATTTACACATATGCAATGCACCTTTGTATTGCATGCACGTG 643 consensus_6341#1 ATTTCGATAAATAAATTTAGATCTGATGAAAATGTTCTA--------------------- 589 * ** *** ** * * * * * * consensus_6341#0 TGTAAAAAAAAGGCACACATACGAGTTTACCACTTACGCGAGTGACTGAGAAGTACTATA 703 consensus_6341#1 ------------------------------------------------------------ consensus_6341#0 TATATCTTATCTAAGAGAGATTATCTAAGAGAGACTATACTCACCTGAGGACTGCCAATA 763 consensus_6341#1 ------------------------------------------------------------ consensus_6341#0 TTTAATTGTTAGTTTGATATACATAAAGGGTGAGTGAGTTTTGCCGCTAGCTAGCATTAA 823 consensus_6341#1 ------------------------------------------------------------ consensus_6341#0 CTAGTAGCAATTACATATGAGGGCGAGGAATATATATAGCGAGTCTTTTACATGTAAAAT 883 consensus_6341#1 ------------------------------------------------------------ consensus_6341#0 AGGCTTTAATGTTATCCCTCTCCAGCTCTTTTTTCCAATGAGAGCTGTGTTTTGTAACCT 943 consensus_6341#1 ------------------------------------------------------------ consensus_6341#0 CGTGATCGGGAATATAATGAAGCATT 969 consensus_6341#1 -------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||