These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6345#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 476 fasta sequence [TCCCGGGGTGCGGACGCCGCCGTCGCCGCCTCGCAGAGCGCCAGCACCGGCGCCGGCGCCGCTGACGCCTGCTCTTTCCCAGAGGTTCCTGGCGGAGCGCAGACCAGCGCCGGTGCCGGAGCCGGTGACCCGGAAGAGGTCCGACCTGGGCACCCTCATGAAACCCAAGGAGGACAAGGTGGAAGAGACCACGAAGCCTCTGCCGCCGCCGGCTGCAGCGGCGGCGGCGGCGGAGGAGGAGGAGGAGAGGATGGCAAGGGAGGCAAGAGGGAAGATGGAAGAAGACAAGAAGAAGGCCAACGAGGAGGTGACGGACATGGCGCAGCTGAGGAGGCCGGCCTCGGCGAGCCGCCGGCAGCTGGTGAACGTGGCGGTGGCGGCCGTGGTCCTCCTCGGCATCACCCTCTACGTGTGGAACACCCTGAGGAACGCCGCAACCGGCGGCGGCGGCAACGGCCATGGCGCGAGCTACAGCG] [+] EMBL AK062338 [TCCCGGGGTGCGGACGCCGCCGTCGCCGCCTCGCAGAGCGCCAGCACCGGCGCCGGCGCCGCTGACGCCTGCTCTTTCCCAGAGGTTCCTGGCGGAGCGCAGACCAGCGCCGGTGCCGGAGCCGGTGACCCGGAAGAGGTCCGACCTGGGCACCCTCATGAAACCCAAGGAGGACAAGGTGGAAGAGACCACGAAGCCTCTGCCGCCGCCGGCTGCAGCGGCGGCGGCGGCGGAGGAGGAGGAGGAGAGGATGGCAAGGGAGGCAAGAGGGAAGATGGAAGAAGACAAGAAGAAGGCCAACGAGGAGGTGACGGACATGGCGCAGCTGAGGAGGCCGGCCTCGGCGAGCCGCCGGCAGCTGGTGAACGTGGCGGTGGCGGCCGTGGTCCTCCTCGGCATCACCCTCTACGTGTGGAACACCCTGAGGAACGCCGCAACCGGCGGCGGCGGCAACGGCCATGGCGCGAGCTACAGCG] consensusID : consensus_6345#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 442 fasta sequence [GGATNGGGGTANANTNAACGGAAAGTTGCCTGNTACCCAAGTTGAAATAACCNTCCTAAAGGGNACAAAAAGTNGNGTTCCCCCNCGGGGGGGCCCNTTTTAAAANAANNGAATCCCCCGGGNTGCAGGATTTGGCAGGGGGGNGGNTTCCCNATTCGNGTTTAAANNTTTAAAGNGNGNTTTTTTTGGNGGGANAAAGTAAAAGNAAATATGNGNGGGGNTTGTTAAATTAATNACGCGGGGGTGTTACGATTGCAAAAGAAAAGTTTTTTTGCTTTGGTGGATCAATTTGATGAAATAAGATGGTGAAAGGGGTTCCCGGCGGAGGGCAGACCAGCCCCGGTGCCGGAGCCGGTGACCCGGAAGAGGTCCGAACTGGGCACCCTTATGAAACCCAAGGGGGACAAGTGGAAGAGACCACGAAGCCTTTTCCCCCCCCGGC] [-] EMBL BE229203 [GGATNGGGGTANANTNAACGGAAAGTTGCCTGNTACCCAAGTTGAAATAACCNTCCTAAAGGGNACAAAAAGTNGNGTTCCCCCNCGGGGGGGCCCNTTTTAAAANAANNGAATCCCCCGGGNTGCAGGATTTGGCAGGGGGGNGGNTTCCCNATTCGNGTTTAAANNTTTAAAGNGNGNTTTTTTTGGNGGGANAAAGTAAAAGNAAATATGNGNGGGGNTTGTTAAATTAATNACGCGGGGGTGTTACGATTGCAAAAGAAAAGTTTTTTTGCTTTGGTGGATCAATTTGATGAAATAAGATGGTGAAAGGGGTTCCCGGCGGAGGGCAGACCAGCCCCGGTGCCGGAGCCGGTGACCCGGAAGAGGTCCGAACTGGGCACCCTTATGAAACCCAAGGGGGACAAGTGGAAGAGACCACGAAGCCTTTTCCCCCCCCGGC] consensusID : consensus_6345#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 425 fasta sequence [ATCCATCAATCAACAGATACACACATGGATCCCAAAGTTGCTGTTGCTCTCGCTCTCGGCCTCGGCGAGCCGCCGGCAGCTGGTGAACGTGGCGGTGGCGGCCGTGGTCCTCCTCGGCATCACCCTCTACGTCTGGAACACCCTGAGGAACGCCGCAACCGGCGGCGGCGGCAACGGCCATGGCGCGAGCTACAGCGACGAGATGTGAAAAGAAAAGAAAAAAAAAAGGGCGCGAAAGTGTTGGAGGTGTCGCCGATCGAGTTTAAATGTTTAATGCGTGCTTCGTCTGGGAAGGGACAAAGCTAAAGTATATATGTGTGTGGATTGTTAATTTAATCACGCGGTGGTGTTACGACTTGCAAAAGACATGTTCTTTTGCTTTGGTGGATCAATTTGATGAAATAAGATGGTGAAAGAATGAGCAC] [+] EMBL CB966279 [ATCCATCAATCAACAGATACACACATGGATCCCAAAGTTGCTGTTGCTCTCGCTCTCGGCCTCGGCGAGCCGCCGGCAGCTGGTGAACGTGGCGGTGGCGGCCGTGGTCCTCCTCGGCATCACCCTCTACGTCTGGAACACCCTGAGGAACGCCGCAACCGGCGGCGGCGGCAACGGCCATGGCGCGAGCTACAGCGACGAGATGTGAAAAGAAAAGAAAAAAAAAAGGGCGCGAAAGTGTTGGAGGTGTCGCCGATCGAGTTTAAATGTTTAATGCGTGCTTCGTCTGGGAAGGGACAAAGCTAAAGTATATATGTGTGTGGATTGTTAATTTAATCACGCGGTGGTGTTACGACTTGCAAAAGACATGTTCTTTTGCTTTGGTGGATCAATTTGATGAAATAAGATGGTGAAAGAATGAGCAC] [+] EMBL CB967132 [ATCCATCAATCAACAGATACACACATGGATCCCAAAGTTGCTGTTGCTCTCGCTCTCGGCCTCGGCGAGCCGCCGGCAGCTGGTGAACGTGGCGGTGGCGGCCGTGGTCCTCCTCGGCATCACCCTCTACGTCTGGAACACCCTGAGGAACGCCGCAACCGGCGGCGGCGGCAACGGCCATGGCGCGAGCTACAGCGACGAGATGTGAAAAGAAAAGAAAAAAAAAAGGGCGCGAAAGTGTTGGAGGTGTCGCCGATCGAGTTTAAATGT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6345#0 TCCCGGGGTGCGGACGCCGCCGTCGCCGCCTCGCAGAGCGCCAGCACCGGCGCCGGCGCC 60 consensus_6345#2 --------------------ATCCATCAATCAACAGA-TACACACATGGATCCCAAAGTT 39 consensus_6345#1 --------------------------------GGATNGGGGTANANTNAACGGAAAGTTG 28 * consensus_6345#0 GCTGACGCCTGCTCTTTCCCAGAGGTTCCTGGCGGAGCGCAGACCAGCG----CCGGTGC 116 consensus_6345#2 GCTGTTGCTCTCGCTCTC------GGCCTCGGCGAGCCGCCGGC---AG----CTGGTGA 86 consensus_6345#1 CCTGNTACCCAAGTTGAAATAACCNTCCTAAAGGGNACAAAAAGTNGNGTTCCCCCNCGG 88 *** * * * * * * * * consensus_6345#0 CGGAGCCGGTGACCCGGAAGAGGTCCGACCTGGGCACCCTCATGAAACCCAAGGAGGACA 176 consensus_6345#2 ACGTGGCGGTGGC--GGCCGTGGTCCT-CCTCGGCATCACCCTCTACGTCTGGAA---CA 140 consensus_6345#1 GGGGGCCCNTTTTAAAANAANNGAATCCCCCGGGNTGCAGGATTTGGCAGGGGGGNGGNT 148 * * * * * ** ** * * * consensus_6345#0 AGGTGGAAGAGACCACGAA-GCCTCTGCCGCCGCCGGCTGCAGCGGCGGCGGCGGCGGAG 235 consensus_6345#2 CCCTGAGGAACGCCGCAACCGGCGGCGGCGGCAACGGCCATGGCGCGAGCTACAGCGACG 200 consensus_6345#1 TCCCNATTCGNGTTTAAAN--NTTTAAAGNGNGNTTTTTTTGGNGGGANAAAGTAAAAGN 206 * * * consensus_6345#0 GAGGAGGAGGAGAGGATGGCAAGGGAGGCAAGAGGGAAGATGGAAGAAGACAAGAAGAAG 295 consensus_6345#2 AGATGTGAAAAGAAAAGAAAAAAAAAAGGGCGCGAAAGTGTTGGAGGTGTCGCCGATCGA 260 consensus_6345#1 AAATATGNGNGGGGNTTGTTAAATTAATNACGCGGGGGTGTT-ACGATTGCAAAAGAAAA 265 * * ** * * * * * * consensus_6345#0 GCCAACGAGGAGGTGACGGACATGGCGCAGCTGAGGAGGCCGGCCTCGGCGAGCCGCCGG 355 consensus_6345#2 GTTTAAATGTTTAATGCGTGCTTCGTCTGGGAAGGGACAAAGCTAAAGTATATATGTGTG 320 consensus_6345#1 GTTTTTTTGCTT-TGGTGGAT-CAATTTGATGAAATAAGATGGTGAAAGGGGTTC-CCGG 322 * * * * * * consensus_6345#0 CAGCTGGTGAACGTGGCGGTGGCGGCCGTGGTC-CTCCTCGGCATCACCCTCTACGTGTG 414 consensus_6345#2 TGGATTGTTAATTTAATCACG-CGGTGGTGTTA-CGACTTGCAAAAGACATGTTCTTTTG 378 consensus_6345#1 CGGAGGGCAGAC-CAGCCCCGGTGCCGGAGCCGGTGACCCGGAAGAGGTCCGAAC-TGGG 380 * * * * * * * * * * * * * consensus_6345#0 GAACACCCTGAGGAACGCCGCA-ACCGGCGGCGGCGGCAACGGCCATGGCGCGAGCTACA 473 consensus_6345#2 C----TTTGGTGGATCAATTTG-ATGAAATAAGATGGTGAAAGAATGAGCAC-------- 425 consensus_6345#1 CACCCTTATGAAACCCAAGGGGGACAAGTGGAAGAGACCACGAAGCCTTTTCCCCCCCCG 440 * * * * * * consensus_6345#0 GCG 476 consensus_6345#2 --- consensus_6345#1 GC- 442 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||