These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6348#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1040 fasta sequence [TTCCTTTTTTTTTTTTACTGGAAAATGAAAAGGATGGAATTTTATAACTTCCAACTGTCTCATGCTTATGACATAATATACAATTCACCTAAGCAACTCTTGCTCGACTCATTTGGCACTTCAGAGATCTCAGGTCACAAGGAAGCAATTGCCTCAAGAGTAAAGACCAACCAAGCCCAACAACATTTTGCCAACTGCTTGCTATTTACTCCTTCCACCAACACGTATGACCCAACAATGGAAAGGCAAAGGATTGACAGGAAAGGGTACAGGGAAAAAAAGGTAACCTCTTGTATGAACTTCAGTGGCTAACTAACCCTCAACATTTGTTTCCTCTAGGGGAAAAGAACAAACAAAATCACTTGTTAGCAGTCAAAACCCACGCCAAGCATTTACAAACATTACCAAACATCAAGGAATAAGTGGAGCACTATGTACATCTGTTTATACATTAGTCAACTCTCTAGATCATTCTCTTGCCTGACTTGAACTGACGCAGTTGGGATAGGCACATTGTGCTCTATATAGTCATCCGAAGCTTCCTCCTCATCATCAGAAGATAGAGTAGACGGCCCCATCCATGACTTGAAACCATCATTAATTCCCCTCTGCATCTCTGGGGTTACTTCTATTGTTGTCTCCAGCATTTCTAGACCCACATTGTGGGGAGTGTAATCACCCTCATCAAGGATCACCGCAGCTTTCCTTCTCAAGAAGAAGGCAGTGCCAGCATATAGGATTACCAAACCCCATGCTGTAATTTCATAGCACCAGAAGAGAGGAACAGAACAACTACTTCCAAGAGCCAGAAGCGTTGATCCAAGAATAATTGCCATGAGACCAAATATGACAGCAAAAACTGCATTTAGTATAGCCAAGCAACGCACACCACCTCTTTTAGAAGCACAGAAGTTATTCTCGACGACACAAATCAATGGATGTCTTCTTGGAGCAGCATATGCAACAGATATGCCAGATACAAGGTAGGCAGACGAGACGGCGAAGAGGAGGGCGGACGGGACGAAGACGACCATCCAGTA] [+] EMBL CB670565 [TTCCTTTTTTTTTTTTACTGGAAAATGAAAAGGATGGAATTTTATAACTTCCAACTGTCTCATGCTTATGACATAATATACAATTCACCTAAGCAACTCTTGCTCGACTCATTTGGCACTTCAGAGATCTCAGGTCACAAGGAAGCAATTGCCTCAAGAGTAAAGACCAACCAAGCCCAACAACATTTTGCCAACTGCTTGCTATTTACTCCTTCCACCAACACGTATGACCCAACAATGGAAAGGCAAAGGATTGACAGGAAAGGGTACAGGGAAAAAAAGGTAACCTCTTGTATGAACTTCAGTGGCTAACTAACCCTCAACATTTGTTTCCTCTAGGGGAAAAGAACAAACAAAATCACTTGTTAGCAGTCAAAACCCACGCCAAGCATTTACAAACATTACCAAACATCAAGGAATAAGTGGAGCACTATGTACATCTGTTTATACATTAGTCAACTCTCTAGATCATTCTCTTGCCTGACTTGAACTGACGCAGTTGGGATAGGCACATTGTGCTCTATATAGTCATCCGAAGCTTCCTCCTCATCATCAGAAGATAGAGTAGACGGCCCCATCCATGACTTGAAACCATCATTAATTCCCCTCTGCATCTCTGGGGTTACTTCTATTGTTGTCTCCAGCATTTCTAGACCCACATTGTGGGGAGTGTAATCACCCTCATCAAGGATCACCGCAGCTTTCCTTCTCAAGAAGAAGGCAGTGCCAGCATATAGGATTACCAAA ] [-] EMBL C97530 [ tTTGGGATAGGCACATTGTG TCTATATAGTCATCCGAAGNTTCTTCTTCATCATCAGAAGATAGA TAGACGGCCCCATCCATGANTTGAANCCATCATTAATTCGCTTCTGCATCTCTGGGTTTACTTCTATTGTTATCTCCAGCATTTCTAGA CCACATTGTGGGGA TGTAATCACCCTCATCAA GATCACCGCAGCTTTCCTTCTCAAGAAGAAGGCAGTGCCAGCATATAGGATTACCAAACCCCATGCTGTAATTTCATAGCACCAGAAGAGAGGAACAGAACAACTACTTCCAAGAGCCAGAAGCGTTGATCCAAGAATAATTGCCATGAGACCAAATATGACAGCAAAAACTGCATTTAGTATAGCCAAGCAACGCACACCACCTCTTTTAGAAGCACAGAAGTTATTCTCGACGACACAAATCAATGGATGTCTTCTTGGAGCAGCATATGCAACAGATATGCCAGATACAAGGTAGGCAGACGAGACGGCGAAGAGGAGGGCGGACGGGACGAAGACGACCATCCAGTA] consensusID : consensus_6348#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 688 fasta sequence [TTTTTTTTTTTTTTTTACAGGGAAAAAAAGGTAACCTCTTGTATGAACTTCAGTGGCTAACTAACCCTCAACATTTGTTTCCTCTAGGGGAAAAGAACAAACAAAATCACTTGTTAGCAGTCAAAACCCACGCCAAGCATTTACAAACATTACCAAACATCAAGGAATAAGTGGAGCACTATGTACATCTGTTTATACATTAGTCAACTCTCTAGATCATTCTCTTGCCTGACTTGAACTGACCCAGTTGGGATAGGCACATTGTGCTCTATATAGTCATCCAAAGCTTCCTCCTCATCATCAGAAGATAGAGTAGACGGCCCCATCCATGACTTGAAACCATCATTAATTCGCCTCTGCATCTCTGGGGTTACTTCTATTGGTGTCTCCAGCATTTCTAGACCCACATTGTGGGGAGTGTAATCACCCTCATCAAGGATCACCGCAGCTTTCCTTCTCAAGAAGAAGGCAGTGCCAGCATATAGGATTACCAAACCCCATGCTGTAATTTCATAGCACCAGAAGAGAGGAACAGAACAACTACTTCCAAGAGCCAGAAGCGTTGATCCAAGAATAATTGCCATGAGACCAAATATGACAGCAAAAACTGCATTTAGTATAGCCAAGCAACGCAAACCACCCTCTTTTAGAAGCACAGAAGTTATTCTCGACGACACAAATCAATGGA] [+] EMBL CA760195 [TTTTTTTTTTTTTTTTACAGGGAAAAAAAGGTAACCTCTTGTATGAACTTCAGTGGCTAACTAACCCTCAACATTTGTTTCCTCTAGGGGAAAAGAACAAACAAAATCACTTGTTAGCAGTCAAAACCCACGCCAAGCATTTACAAACATTACCAAACATCAAGGAATAAGTGGAGCACTATGTACATCTGTTTATACATTAGTCAACTCTCTAGATCATTCTCTTGCCTGACTTGAACTGACCCAGTTGGGATAGGCACATTGTGCTCTATATAGTCATCCAAAGCTTCCTCCTCATCATCAGAAGATAGAGTAGACGGCCCCATCCATGACTTGAAACCATCATTAATTCGCCTCTGCATCTCTGGGGTTACTTCTATTGGTGTCTCCAGCATTTCTAGACCCACATTGTGGGGAGTGTAATCACCCTCATCAAGGATCACCGCAGCTTTCCTTCTCAAGAAGAAGGCAGTGCCAGCATATAGGATTACCAAACCCCATGCTGTAATTTCATAGCACCAGAAGAGAGGAACAGAACAACTACTTCCAAGAGCCAGAAGCGTTGATCCAAGAATAATTGCCATGAGACCAAATATGACAGCAAAAACTGCATTTAGTATAGCCAAGCAACGCAAACCACCCTCTTTTAGAAGCACAGAAGTTATTCTCGACGACACAAATCAATGGA] consensusID : consensus_6348#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 509 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTGGAAAGGCAAAGGATTGACAGGAAAGGGTACAGGGAAAAAAAGGTAACCTCTTGTATGAACTTCAGTGGCTAACTAACCCTCAACATTTGTTTCCTCTAGGGGAAAAGAACAAACAAAATCACTTGTTAGCAGTCAAAACCCACGCCAAGCATTTACAAACATTACCAAACATCAAGGAATAAGTGGAGCACTATGTACATCTGTTTATACATTAGTCAACTCTCTAGATCATTCTCTTGCCTGACTTGAACTGACGCAGTTGGGATAGGCACATTGTGCTCTATATAGTCATCCGAAGCTTCCTCCTCATCATCAGAAGATAGAGTAGACGGCCCCATCCATGACTTGAAACCATCATTAATTCGCCTCTGCATCTCTGGGGTTACTTCTATTGTTATCTCCAGCATTTCTAGACCCACATTGTGGGGAGTGTAATCACCCTCATCAAGGATCACCGGCAGCTTTCCTTCTCAAGAAGAAGGCAG] [-] EMBL C97529 [TTTTTTTTTTTTTTTTTTTTTTTGGAAAGGCAAAGGATTGACAGGAAAGGGTACAGGGAAAAAAAGGTAACCTCTTGTATGAACTTCAGTGGCTAACTAACCCTCAACATTTGTTTCCTCTAGGGGAAAAGAACAAACAAAATCACTTGTTAGCAGTCAAAACCCACGCCAAGCATTTACAAACATTACCAAACATCAAGGAATAAGTGGAGCACTATGTACATCTGTTTATACATTAGTCAACTCTCTAGATCATTCTCTTGCCTGACTTGAACTGACGCAGTTGGGATAGGCACATTGTGCTCTATATAGTCATCCGAAGCTTCCTCCTCATCATCAGAAGATAGAGTAGACGGCCCCATCCATGACTTGAAACCATCATTAATTCGCCTCTGCATCTCTGGGGTTACTTCTATTGTTATCTCCAGCATTTCTAGACCCACATTGTGGGGAGTGTAATCACCCTCATCAAGGATCACCGGCAGCTTTCCTTCTCAAGAAGAAGGCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6348#0 TTCCTTTTTTTTTTTTACTGGAAAATGAAAAGGATGGAATTTTATAACTTCCAACTGTCT 60 consensus_6348#1 ------------------------------------------------------------ consensus_6348#2 ------------------------------------------------------------ consensus_6348#0 CATGCTTATGACATAATATACAATTCACCTAAGCAACTCTTGCTCGACTCATTTGGCACT 120 consensus_6348#1 ------------------------------------------------------------ consensus_6348#2 ------------------------------------------------------------ consensus_6348#0 TCAGAGATCTCAGGTCACAAGGAAGCAATTGCCTCAAGAGTAAAGACCAACCAAGCCCAA 180 consensus_6348#1 ------------------------------------------------------------ consensus_6348#2 ------------------------------------------------------------ consensus_6348#0 CAACATTTTGCCAACTGCTTGCTATTTACTCCTTCCACCAACACGTATGACCCAACAATG 240 consensus_6348#1 ------------------------------------------------------------ consensus_6348#2 ------------------------------------------------------------ consensus_6348#0 GAAAGGCAAAGGATTGACAGGAAAGGG----------------------------TACAG 272 consensus_6348#1 ------------TTTTTTTTTTTTTTT----------------------------TACAG 20 consensus_6348#2 ----TTTTTTTTTTTTTTTTTTTTTTTGGAAAGGCAAAGGATTGACAGGAAAGGGTACAG 56 ** ***** consensus_6348#0 GGAAAAAAAGGTAACCTCTTGTATGAACTTCAGTGGCTAACTAACCCTCAACATTTGTTT 332 consensus_6348#1 GGAAAAAAAGGTAACCTCTTGTATGAACTTCAGTGGCTAACTAACCCTCAACATTTGTTT 80 consensus_6348#2 GGAAAAAAAGGTAACCTCTTGTATGAACTTCAGTGGCTAACTAACCCTCAACATTTGTTT 116 ************************************************************ consensus_6348#0 CCTCTAGGGGAAAAGAACAAACAAAATCACTTGTTAGCAGTCAAAACCCACGCCAAGCAT 392 consensus_6348#1 CCTCTAGGGGAAAAGAACAAACAAAATCACTTGTTAGCAGTCAAAACCCACGCCAAGCAT 140 consensus_6348#2 CCTCTAGGGGAAAAGAACAAACAAAATCACTTGTTAGCAGTCAAAACCCACGCCAAGCAT 176 ************************************************************ consensus_6348#0 TTACAAACATTACCAAACATCAAGGAATAAGTGGAGCACTATGTACATCTGTTTATACAT 452 consensus_6348#1 TTACAAACATTACCAAACATCAAGGAATAAGTGGAGCACTATGTACATCTGTTTATACAT 200 consensus_6348#2 TTACAAACATTACCAAACATCAAGGAATAAGTGGAGCACTATGTACATCTGTTTATACAT 236 ************************************************************ consensus_6348#0 TAGTCAACTCTCTAGATCATTCTCTTGCCTGACTTGAACTGACGCAGTTGGGATAGGCAC 512 consensus_6348#1 TAGTCAACTCTCTAGATCATTCTCTTGCCTGACTTGAACTGACCCAGTTGGGATAGGCAC 260 consensus_6348#2 TAGTCAACTCTCTAGATCATTCTCTTGCCTGACTTGAACTGACGCAGTTGGGATAGGCAC 296 ******************************************* **************** consensus_6348#0 ATTGTGCTCTATATAGTCATCCGAAGCTTCCTCCTCATCATCAGAAGATAGAGTAGACGG 572 consensus_6348#1 ATTGTGCTCTATATAGTCATCCAAAGCTTCCTCCTCATCATCAGAAGATAGAGTAGACGG 320 consensus_6348#2 ATTGTGCTCTATATAGTCATCCGAAGCTTCCTCCTCATCATCAGAAGATAGAGTAGACGG 356 ********************** ************************************* consensus_6348#0 CCCCATCCATGACTTGAAACCATCATTAATTCCCCTCTGCATCTCTGGGGTTACTTCTAT 632 consensus_6348#1 CCCCATCCATGACTTGAAACCATCATTAATTCGCCTCTGCATCTCTGGGGTTACTTCTAT 380 consensus_6348#2 CCCCATCCATGACTTGAAACCATCATTAATTCGCCTCTGCATCTCTGGGGTTACTTCTAT 416 ******************************** *************************** consensus_6348#0 TGTTGTCTCCAGCATTTCTAGACCCACATTGTGGGGAGTGTAATCACCCTCATCAAGGAT 692 consensus_6348#1 TGGTGTCTCCAGCATTTCTAGACCCACATTGTGGGGAGTGTAATCACCCTCATCAAGGAT 440 consensus_6348#2 TGTTATCTCCAGCATTTCTAGACCCACATTGTGGGGAGTGTAATCACCCTCATCAAGGAT 476 ** * ******************************************************* consensus_6348#0 CACCG-CAGCTTTCCTTCTCAAGAAGAAGGCAGTGCCAGCATATAGGATTACCAAACCCC 751 consensus_6348#1 CACCG-CAGCTTTCCTTCTCAAGAAGAAGGCAGTGCCAGCATATAGGATTACCAAACCCC 499 consensus_6348#2 CACCGGCAGCTTTCCTTCTCAAGAAGAAGGCAG--------------------------- 509 ***** *************************** consensus_6348#0 ATGCTGTAATTTCATAGCACCAGAAGAGAGGAACAGAACAACTACTTCCAAGAGCCAGAA 811 consensus_6348#1 ATGCTGTAATTTCATAGCACCAGAAGAGAGGAACAGAACAACTACTTCCAAGAGCCAGAA 559 consensus_6348#2 ------------------------------------------------------------ consensus_6348#0 GCGTTGATCCAAGAATAATTGCCATGAGACCAAATATGACAGCAAAAACTGCATTTAGTA 871 consensus_6348#1 GCGTTGATCCAAGAATAATTGCCATGAGACCAAATATGACAGCAAAAACTGCATTTAGTA 619 consensus_6348#2 ------------------------------------------------------------ consensus_6348#0 TAGCCAAGCAACGCACACCACC-TCTTTTAGAAGCACAGAAGTTATTCTCGACGACACAA 930 consensus_6348#1 TAGCCAAGCAACGCAAACCACCCTCTTTTAGAAGCACAGAAGTTATTCTCGACGACACAA 679 consensus_6348#2 ------------------------------------------------------------ consensus_6348#0 ATCAATGGATGTCTTCTTGGAGCAGCATATGCAACAGATATGCCAGATACAAGGTAGGCA 990 consensus_6348#1 ATCAATGGA--------------------------------------------------- 688 consensus_6348#2 ------------------------------------------------------------ consensus_6348#0 GACGAGACGGCGAAGAGGAGGGCGGACGGGACGAAGACGACCATCCAGTA 1040 consensus_6348#1 -------------------------------------------------- consensus_6348#2 -------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||