These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6350#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 768 fasta sequence [AAGCACTAGGCATATCCATACATTGTGGCAGTCATTCAAAACAGTTGTGAGGATGATCGAAGCAGTACATATGAGTCTTCTTCCATTACAGAGCTATAAACTGCCTCTAAACTGCTCGTGTAGATGAGGCAAGTTTTGCAAGCATATATAGCACAGCTGCTCAAGTGAACGGTGAAAAATCTAGTAAACTCGAAGCCAGTCATTGAGCTCAATCATCAATATGTTCGAGCAAACTAAGTCATGTACTCCTGTTGTGTCTCAAACATGAGTCGGATGGTGACTGACTGGCAATTCACATAATTTTATGCGCCGATATATGTTACTGCCGTGCTTGCCAGTCATTTTCCAATGCAAAATTTGCTGAATATGCTGCTCAGGACTTCTTCAGAGATATCCTCCCCGCTGATTGTTGCAAGAGCCAATGCTGCTTCCCTCAAGTCTATAGTCCAGAAGTCCATCGGCAACTGCTCGTTGATAGATGACTCTAGCCTAGTAAAAGCTTGTTGGGTCCTCAATAGCTGTTCAAATTGCCTCTGATTTACAGTCCATCGCCGTCCCTCTGATGGTACAGGCTCAAGACCTCTGACCTCTATTATAGCCTTCTCCAACTCAGAAATGCCTTTACCAGTGACTGCACATGTTTGCACATGTTTTTTGAAAACTCCATGGAATTGTTCAAACTGTTCTCCTGAAATAAATGGTGCACAATCTACCTTGTTGATTACAAGGACCATTGGCACTGGAGCACCTGAAGATTTCTTACTGATC] [+] EMBL CB658542 [AAGCACTAGGCATATCCATACATTGTGGCAGTCATTCAAAACAGTTGTGAGGATGATCGAAGCAGTACATATGAGTCTTCTTCCATTACAGAGCTATAAACTGCCTCTAAACTGCTCGTGTAGATGAGGCAAGTTTTGCAAGCATATATAGCACAGCTGCTCAAGTGAACGGTGAAAAATCTAGTAAACTCGAAGCCAGTCATTGAGCTCAATCATCAATATGTTCGAGCAAACTAAGTCATGTACTCCTGTTGTGTCTCAAACATGAGTCGGATGGTGACTGACTGGCAATTCACATAATTTTATGCGCCGATATATGTTACTGCCGTGCTTGCCAGTCATTTTCCAATGCAAAATTTGCTGAATATGCTGCTCAGGACTTCTTCAGAGATATCCTCCCCGCTGATTGTTGCAAGAGCCAATGCTGCTTCCCTCAAGTCTATAGTCCAGAAGTCCATCGGCAACTGCTCGTTGATAGATGACTCTAGCCTAGTAAAAGCTTGTTGGGTCCTCAATAGCTGTTCAAATTGCCTCTGATTTACAGTCCATCGCCGTCCCTCTGATGGTACAGGCTCAAGACCTCTGACCTCTATTATAGCCTTCTCCAACTCAGAAATGCCTTTACCAGTGACTGCACATGTTTGCACATGTTTTTTGAAAACTCCATGGAATTGTTCAAACTGTTCTCCTGAAATAAATGGTGCACAATCTACCTTGTTGATTACAAGGACCATTGGCACTGGAGCACCTGAAGATTTCTTACTGATC] consensusID : consensus_6350#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 653 fasta sequence [CACGTGATTGTAACATAATCAGTGGGTCACCAAAAATATGCAGTTTCACGGGCGTGCCAGTCTTTTTTCAATGCAAGAATTGCTGAATATGCTGCTCAGGACTTCTTCAGAGATATCCTCCCCGCTGATTGTTGCAAGAGCCAATGCTGCTTCCCTCAAGTCTATAGTCCAGAAGTCCATCGGCAACTGTTCGGTGATAGATGACTCTAGCCTAGTAAAAGCGTGTTGGGTCCTCAATAGCTGTTCAAATTGCCTCTGATTTACAGTCCATCGCCGTCCCTCTGATGGTACAGGCTCAAGACCTCTGACCTCTATTATAGCCTTCTCCAACTCAGAAATGCCTTTACCAGTGACTGCACATGTTTGCACATGTTTTTTGAAAACTCCATGGAATTGTTCAAACTGTTCTCCTGAAATAAATGGTGCACAATCTACCTTGTTGATTACAAGGACCATTGGCACTGGAGCACCTGAAGATTTCTTACTGATCAACACATGCTCAATAAGTTTAGTGTCATCTTCAGTCCACCCATCAACTGCACTTATTGTCATAATAATCAGATCAGCTCCCAGTGCAGCAGCTTCTGATCGTTCCACACCAATTTTTTCCACGATGTCATCAGTTTCTCTTATACCAGCAGTATCTAGAAGGG] [-] EMBL CA757293 [CACGTGATTGTAACATAATCAGTGGGTCACCAAAAATATGCAGTTTCACGGGCGTGCCAGTCTTTTTTCAATGCAAGAATTGCTGAATATGCTGCTCAGGACTTCTTCAGAGATATCCTCCCCGCTGATTGTTGCAAGAGCCAATGCTGCTTCCCTCAAGTCTATAGTCCAGAAGTCCATCGGCAACTGTTCGGTGATAGATGACTCTAGCCTAGTAAAAGCGTGTTGGGTCCTCAATAGCTGTTCAAATTGCCTCTGATTTACAGTCCATCGCCGTCCCTCTGATGGTACAGGCTCAAGACCTCTGACCTCTATTATAGCCTTCTCCAACTCAGAAATGCCTTTACCAGTGACTGCACATGTTTGCACATGTTTTTTGAAAACTCCATGGAATTGTTCAAACTGTTCTCCTGAAATAAATGGTGCACAATCTACCTTGTTGATTACAAGGACCATTGGCACTGGAGCACCTGAAGATTTCTTACTGATCAACACATGCTCAATAAGTTTAGTGTCATCTTCAGTCCACCCATCAACTGCACTTATTGTCATAATAATCAGATCAGCTCCCAGTGCAGCAGCTTCTGATCGTTCCACACCAATTTTTTCCACGATGTCATCAGTTTCTCTTATACCAGCAGTATCTAGAAGGG] consensusID : consensus_6350#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 344 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGGATGATCGAAGCAGTACATATGAGTCTTCTTCCATTACAGAGCTATAAACTGCCTCTAAACTGCTCGTGTAGATGAGGCAAGTTTTGCAAGCATATATAGCACAGCTGCTCAAGTGAACGGTGAAAAATCTAGTAAACTCGAAGCCAGTCATTGAGCTCAATCATCAATATGTTCGAGCAAACTAAGTCATGTACTCCTGTTGTGTCTCAAACATGAGTCGGATGGTGACTGACTGGCAATTCACATAATTTTATGCGCCGTATATATGTTACTGCCGCGCATG] [-] EMBL CF315009 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGGATGATCGAAGCAGTACATATGAGTCTTCTTCCATTACAGAGCTATAAACTGCCTCTAAACTGCTCGTGTAGATGAGGCAAGTTTTGCAAGCATATATAGCACAGCTGCTCAAGTGAACGGTGAAAAATCTAGTAAACTCGAAGCCAGTCATTGAGCTCAATCATCAATATGTTCGAGCAAACTAAGTCATGTACTCCTGTTGTGTCTCAAACATGAGTCGGATGGTGACTGACTGGCAATTCACATAATTTTATGCGCCGTATATATGTTACTGCCGCGCATG] consensusID : consensus_6350#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 312 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGACTGACTGGCAATTCACATAATTTTATGCCCCCATATATGTTACTGCCTGTTCAAATTGCAAACAAATCTTTGGCTCAAAACAACTGATTGTAACCATATTCAGTGGATCAACAAAAATATGCAGTTTACCGGGCTTGCCAGTCATTTTCCAATGCAAAATTTGCTGAATATGCTGCTCAAGACTTTTTCAAAAATATCCTCCCCGCTGATTGTTGCAAAAACCAATGCTGCTTCCCTCAAGTCTATAGTCCAAAAATCCATCGGCAACT] [+] EMBL CF325451 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGACTGACTGGCAATTCACATAATTTTATGCCCCCATATATGTTACTGCCTGTTCAAATTGCAAACAAATCTTTGGCTCAAAACAACTGATTGTAACCATATTCAGTGGATCAACAAAAATATGCAGTTTACCGGGCTTGCCAGTCATTTTCCAATGCAAAATTTGCTGAATATGCTGCTCAAGACTTTTTCAAAAATATCCTCCCCGCTGATTGTTGCAAAAACCAATGCTGCTTCCCTCAAGTCTATAGTCCAAAAATCCATCGGCAACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6350#1 ------------------------------------------------------------ consensus_6350#3 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGACTGACTGGCAATTCACA 60 consensus_6350#0 -----------AAGCACTAGGCATATCCATACATTGTGGCAGTCATTCAAAACAGTTGTG 49 consensus_6350#2 --TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG 58 consensus_6350#1 ------------------------------------------------------------ consensus_6350#3 TAATTTTATGCCCCCATATATGTTACTGCCTGTTCAAATTGCAAACAAATCTTTGGCTCA 120 consensus_6350#0 AGGATGATCGAAGCAGTACATATGAGT-CTTCTTCCATTACAGAGCTATAAACTGCCTCT 108 consensus_6350#2 AGGATGATCGAAGCAGTACATATGAGT-CTTCTTCCATTACAGAGCTATAAACTGCCTCT 117 consensus_6350#1 ---CACGTGATTGTAAC-ATAATCAGTGGGTCACCAAAAATATGCAGTTTCACGGGCGTG 56 consensus_6350#3 AAACAACTGATTGTAACCATATTCAGTGGATCAACAAAAATATGCAGTTTACCGGGCTTG 180 consensus_6350#0 AAACTGCTCGT-GTAGATGAGGCAAGT---TTTGCAAGCATATATAGCACAGCTGCTCAA 164 consensus_6350#2 AAACTGCTCGT-GTAGATGAGGCAAGT---TTTGCAAGCATATATAGCACAGCTGCTCAA 173 * * * *** *** * *** **** ** * * consensus_6350#1 CCAGTCTTTTTTCAATGCAAGAATTGCTGAATATGCTGCTCAGGACTTCTTCAGAGATAT 116 consensus_6350#3 CCAGTCATTTTCCAATGCAAAATTTGCTGAATATGCTGCTCAAGACTTTTTCAAAAATAT 240 consensus_6350#0 GTGAACGGTGAAAAATCTAGTAAACTCGAAGCCAGTCATT--GAGCTCAATCATCAATAT 222 consensus_6350#2 GTGAACGGTGAAAAATCTAGTAAACTCGAAGCCAGTCATT--GAGCTCAATCATCAATAT 231 * * *** * * * * * * ** *** **** consensus_6350#1 CCTCCCCGCTGATTGTTGCAAGAGCCAATGCTGCTTCCCTCAAGTCTATAGTCCAGAAGT 176 consensus_6350#3 CCTCCCCGCTGATTGTTGCAAAAACCAATGCTGCTTCCCTCAAGTCTATAGTCCAAAAAT 300 consensus_6350#0 G-TTCGAGCAAACTAAGTCATGTACTCCTGTTGTGTCTCAAACATGAGTCGGATGGTGAC 281 consensus_6350#2 G-TTCGAGCAAACTAAGTCATGTACTCCTGTTGTGTCTCAAACATGAGTCGGATGGTGAC 290 * * ** * * ** * ** ** ** * * * * * consensus_6350#1 CCATCGGCAACT-GTTCGGTGATAGATGACTCTAGCCTAGTAAAAGCGTGTTGGGTCCTC 235 consensus_6350#3 CCATCGGCAACT------------------------------------------------ 312 consensus_6350#0 TGACTGGCAATTCACATAATTTTATGCGCCG-ATATATGTTACTGCCGTGCTTGCCAGTC 340 consensus_6350#2 TGACTGGCAATTCACATAATTTTATGCGCCGTATATATGTTACTGCCGCGCATG------ 344 * ***** * consensus_6350#1 AATAGCTGTTCAAATTGCCTCTGATTTACAGTCCATCGCCGTCCCTCTGATGGTACAGGC 295 consensus_6350#3 ------------------------------------------------------------ consensus_6350#0 ATTTTCCAATGCAAAATTTGCTGAATATGCTGCTCAGGACTTCTTCAGAGATATCCTCCC 400 consensus_6350#2 ------------------------------------------------------------ consensus_6350#1 TCAAGACCTCTGACCTCTATTATAGCCTTCTCCAACTCAGAAATGCCTTTACCAGTGACT 355 consensus_6350#3 ------------------------------------------------------------ consensus_6350#0 CGCTGATTGTTGCAAGAGCCAATGCTGCTTCCCTCAAGTCTATAGTCCAGAAGTCCATCG 460 consensus_6350#2 ------------------------------------------------------------ consensus_6350#1 GCACATGTTTGCACATGTTTTTTGAAAACTCCATGGAATTGTTCAAACTGTTCTCCTGAA 415 consensus_6350#3 ------------------------------------------------------------ consensus_6350#0 GCAACTGCTCGTTGATAGATGACTCTAGCCTAGTAAAAGCTTGTTGGGTCCTCAATAGCT 520 consensus_6350#2 ------------------------------------------------------------ consensus_6350#1 ATAAATGGTGCACAATCTACCTTGTTGATTACAAGGACCATTGGCACTGGAGCACCTGAA 475 consensus_6350#3 ------------------------------------------------------------ consensus_6350#0 GTTCAAATTGCCTCTGATTTACAGTCCATCGCCGTCCCTCTGATGGTACAGGCTCAAGAC 580 consensus_6350#2 ------------------------------------------------------------ consensus_6350#1 GATTTCTTACTGATCAACACATGCTCAATAAGTTTAGTGTCATCTTCAGTCCACCCATCA 535 consensus_6350#3 ------------------------------------------------------------ consensus_6350#0 CTCTGACCTCTATTATAGCCTTCTCCAACTCAGAAATGCCTTTACCAGTGACTGCACATG 640 consensus_6350#2 ------------------------------------------------------------ consensus_6350#1 ACTGCACTTATTGTCATAATAATCAGATCAGCTCCCAGTGCAGCAGCTTCTGATCGTTCC 595 consensus_6350#3 ------------------------------------------------------------ consensus_6350#0 TTTGCACATGTTTTTTGAAAACTCCATGGAATTGTTCAAACTGTTCTCCTGAAATAAATG 700 consensus_6350#2 ------------------------------------------------------------ consensus_6350#1 ACACCAATTTTTTCCACGATGTCATCAGTTTCTCTTATACCAGCAGTATCTAGAAGGG-- 653 consensus_6350#3 ------------------------------------------------------------ consensus_6350#0 GTGCACAATCTACCTTGTTGATTACAAGGACCATTGGCACTGGAGCACCTGAAGATTTCT 760 consensus_6350#2 ------------------------------------------------------------ consensus_6350#1 -------- consensus_6350#3 -------- consensus_6350#0 TACTGATC 768 consensus_6350#2 -------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||