These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6355#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1334 fasta sequence [CGCCCACTGGGACTTCCCCTCCCTTTCCTAGTTTCCTCCCAATCGTGACCAAATTCCGCCAGATCGCCGGTGGTCTCCTTCGCCGGCCGCCTACAGGAACCGCTCAACCGCGGGCACCAGCTACCGCCGCCCGCCTTCTTCCTCCCTCGGAGTCCCCAATACCACAACCCTTGCCGCAGAGAAAGGCGCTGTAGTTGGTGGTGGTAGAGCTGGCTGTGGAGGCGAGGGAGCGAGGATAGGGAGGGGATGACTAGCCTGTCAATTACGGTGATGACGCTCAACCTACACGAGGGGGAGCAACCGAGCGAGAGCCCCAACAGCTGGGAGAGGCGCCGCGACATCTGCGTCAGCGTCATCACCAGCTACTCCCCCACCATCCTCTGCACCCAGCAAGGATTGAGGTGGCAGCTGGACTACCTACAGCAGTGCCTGCCTGGTTATGAGCAATTTGGGATTTCAAGAAAAGGCTCAGAGGATAACACTGATGAATATTGTACAATATTCTATGAAAAAGAAAAGGTGGAGCTTACAGAAGGTGGTACCTTTTGGTTGTCAGAATCTCCTTCAGTGCCTGGAAGCGTTTCATGGGGGGCAACTGCACCCTGCATTGCTACATGGGCAACACATTTCAACTCAAACAAGTAGAA-CCACCTGGGTTCAGCTTCCAGATTGTAAATACAAACCTTGATGAAGATAGCCCTCGAGCTCGTAGACGAAGTGCTTTGCTAACGTGGCAACATATAGCATCGTTGCCACCCAATTTACCAGTGATCTATTGTGGTGGATTCAACACACAG-AAGGAGTCTATGACTGGGCGGTTTTTGCTCGGTAGATCCAGAGAACAT-GGTGTTGTGGGTGATATGAGAGATGCTTGGCCAAATGCTCGTGTCCGCAAAAATGTTTCACTCATACATACGTATCATGGATTTAAAGGGGAGAAACAAGGTGCCCTAGAGTTTCTGAAATTAATATTTAGAGCACTTTGTCTCTGCTGGGATCGACAGACTCAGGACTTGCATATTGACTGGATACTGTTTAGAGGGCGTCCACTGGTTCCTGCACTCTGTGAAGTCATAAATGACAATATTGATGGTGTTTATCCTTCTTCACATTTTCCCATATTTGCTGAATTTTTGCTTCCACGCTCCGTCCGCCTAGTGGAGACACCATAATCGTTTTGTGTGTTCTTTTTGCCATACCATTTCTTTTTCATCATTAATGTTTCTTTTTGGTTAAATTGTTTGTTTATTTTTATTTTCTCTCTGTCGCGTTTTGTTTGCCTTGATCATACACGTTACATGTACTCCTGTAGTCCTGTGCAGAATCTGGGCCAA] [+] EMBL AK070566 [CGCCCACTGGGACTTCCCCTCCCTTTCCTAGTTTCCTCCCAATCGTGACCAAATTCCGCCAGATCGCCGGTGGTCTCCTTCGCCGGCCGCCTACAGGAACCGCTCAACCGCGGGCACCAGCTACCGCCGCCCGCCTTCTTCCTCCCTCGGAGTCCCCAATACCACAACCCTTGCCGCAGAGAAAGGCGCTGTAGTTGGTGGTGGTAGAGCTGGCTGTGGAGGCGAGGGAGCGAGGATAGGGAGGGGATGACTAGCCTGTCAATTACGGTGATGACGCTCAACCTACACGAGGGGGAGCAACCGAGCGAGAGCCCCAACAGCTGGGAGAGGCGCCGCGACATCTGCGTCAGCGTCATCACCAGCTACTCCCCCACCATCCTCTGCACCCAGCAAGGATTGAGGTGGCAGCTGGACTACCTACAGCAGTGCCTGCCTGGTTATGAGCAATTTGGGATTTCAAGAAAAGGCTCAGAGGATAACACTGATGAATATTGTACAATATTCTATGAAAAAGAAAAGGTGGAGCTTACAGAAGGTGGTACCTTTTGGTTGTCAGAATCTCCTTCAGTGCCTGGAAGCGTTTCATGGGGGGCAACTGCACCCTGCATTGCTACATGGGCAACACATTTCAACTCAAACAAGTAGAA CCACCTGGGTTCAGCTTCCAGATTGTAAATACAAACCTTGATGAAGATAGCCCTCGAGCTCGTAGACGAAGTGCTTTGCTAACGTGGCAACATATAGCATCGTTGCCACCCAATTTACCAGTGATCTATTGTGGTGGATTCAACACACAG AAGGAGTCTATGACTGGGCGGTTTTTGCTCGGTAGATCCAGAGAACAT GGTGTTGTGGGTGATATGAGAGATGCTTGGCCAAATGCTCGTGTCCGCAAAAATGTTTCACTCATACATACGTATCATGGATTTAAAGGGGAGAAACAAGGTGCCCTAGAGTTTCTGAAATTAATATTTAGAGCACTTTGTCTCTGCTGGGATCGACAGACTCAGGACTTGCATATTGACTGGATACTGTTTAGAGGGCGTCCACTGGTTCCTGCACTCTGTGAAGTCATAAATGACAATATTGATGGTGTTTATCCTTCTTCACATTTTCCCATATTTGCTGAATTTTTGCTTCCACGCTCCGTCCGCCTAGTGGAGACACCATAATCGTTTTGTGTGTTCTTTTTGCCATACCATTTCTTTTTCATCATTAATGTTTCTTTTTGGTTAAATTGTTTGTTTATTTTTATTTTCTCTCTGTCGCGTTTTGTTTGCCTTGATCATACACGTTACATGTACTCCTGTAGTCCTGTGCAGAATCTGGGCCAA] [+] EMBL CA763827 [ aaGGGGGGCAACTGCACCCTGCATTGCTACATGGGCA ACATTTCAACTCAAACAAGTAGAACCCACCTGGGTTCAGCTTCCAGATTGTAAATACAAACCTTGATGAAGATAGCCCTCGAGCTCGTAGACGAAGTGCTTTGCTAACGTGGCAACATATAGCATCGTTGCCACCCAATTTACCAGTGATCTATTGTGGTGGATTCAACACACAGNAAGGAGTCTATGATNGGGCGGTTTTTGCTCGGTAGATCCAGAGAACATGGGTGTTGTGGGTGATATGAGAGATGCTTGGCCAAATGCTCGTGTCCGCAAAAATGTTTCACTCATACATACGTATCATGGATTTAAAGGGGAGAAACAAGGTGCCCTAGAGTTTCTGAAATTAATATTTAGAGCACTTTGTCTCTGCTGGGATCGACAG ] consensusID : consensus_6355#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 236 fasta sequence [GAGGGCGTCCACTGGTTCCTGCACTCTGTGAAGTCATAAATGACAATATTGATGGTGTTTATCCTTCTTCACATTTTCCCATATTTGCTGAATTTTTGCTTCCACGCTCCGTCCGCCTAGTGGAGACACCATAATCGTTTTGTGTGTTCTTTTTGCCAAACCATTTCTTTTTCATCATTAATGTTTCTTTTTGGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCGAGACT] [-] EMBL CA756365 [GAGGGCGTCCACTGGTTCCTGCACTCTGTGAAGTCATAAATGACAATATTGATGGTGTTTATCCTTCTTCACATTTTCCCATATTTGCTGAATTTTTGCTTCCACGCTCCGTCCGCCTAGTGGAGACACCATAATCGTTTTGTGTGTTCTTTTTGCCAAACCATTTCTTTTTCATCATTAATGTTTCTTTTTGGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCGAGACT] [-] EMBL BE040503 [GAGGGCGTCCACTGGTTCCTGCACTCTGTGAAGTCATAAATGACAATATTGATGGTGTTTATCCTTCTTCACATTTTCCCATATTTGCTGAATTTTTGCTTCCACGCTCCGTCCGCCTAGTGGAGACACCATAATCGTTTTGTGTGTTCTTTTTGCCAAACCATTTCTTTTTCATCATTAATGTTTCTTTTTGGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCGAGACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6355#0 CGCCCACTGGGACTTCCCCTCCCTTTCCTAGTTTCCTCCCAATCGTGACCAAATTCCGCC 60 consensus_6355#1 ------------------------------------------------------------ consensus_6355#0 AGATCGCCGGTGGTCTCCTTCGCCGGCCGCCTACAGGAACCGCTCAACCGCGGGCACCAG 120 consensus_6355#1 ------------------------------------------------------------ consensus_6355#0 CTACCGCCGCCCGCCTTCTTCCTCCCTCGGAGTCCCCAATACCACAACCCTTGCCGCAGA 180 consensus_6355#1 ------------------------------------------------------------ consensus_6355#0 GAAAGGCGCTGTAGTTGGTGGTGGTAGAGCTGGCTGTGGAGGCGAGGGAGCGAGGATAGG 240 consensus_6355#1 ------------------------------------------------------------ consensus_6355#0 GAGGGGATGACTAGCCTGTCAATTACGGTGATGACGCTCAACCTACACGAGGGGGAGCAA 300 consensus_6355#1 ------------------------------------------------------------ consensus_6355#0 CCGAGCGAGAGCCCCAACAGCTGGGAGAGGCGCCGCGACATCTGCGTCAGCGTCATCACC 360 consensus_6355#1 ------------------------------------------------------------ consensus_6355#0 AGCTACTCCCCCACCATCCTCTGCACCCAGCAAGGATTGAGGTGGCAGCTGGACTACCTA 420 consensus_6355#1 ------------------------------------------------------------ consensus_6355#0 CAGCAGTGCCTGCCTGGTTATGAGCAATTTGGGATTTCAAGAAAAGGCTCAGAGGATAAC 480 consensus_6355#1 ------------------------------------------------------------ consensus_6355#0 ACTGATGAATATTGTACAATATTCTATGAAAAAGAAAAGGTGGAGCTTACAGAAGGTGGT 540 consensus_6355#1 ------------------------------------------------------------ consensus_6355#0 ACCTTTTGGTTGTCAGAATCTCCTTCAGTGCCTGGAAGCGTTTCATGGGGGGCAACTGCA 600 consensus_6355#1 ------------------------------------------------------------ consensus_6355#0 CCCTGCATTGCTACATGGGCAACACATTTCAACTCAAACAAGTAGAACCACCTGGGTTCA 660 consensus_6355#1 ------------------------------------------------------------ consensus_6355#0 GCTTCCAGATTGTAAATACAAACCTTGATGAAGATAGCCCTCGAGCTCGTAGACGAAGTG 720 consensus_6355#1 ------------------------------------------------------------ consensus_6355#0 CTTTGCTAACGTGGCAACATATAGCATCGTTGCCACCCAATTTACCAGTGATCTATTGTG 780 consensus_6355#1 ------------------------------------------------------------ consensus_6355#0 GTGGATTCAACACACAGAAGGAGTCTATGACTGGGCGGTTTTTGCTCGGTAGATCCAGAG 840 consensus_6355#1 ------------------------------------------------------------ consensus_6355#0 AACATGGTGTTGTGGGTGATATGAGAGATGCTTGGCCAAATGCTCGTGTCCGCAAAAATG 900 consensus_6355#1 ------------------------------------------------------------ consensus_6355#0 TTTCACTCATACATACGTATCATGGATTTAAAGGGGAGAAACAAGGTGCCCTAGAGTTTC 960 consensus_6355#1 ------------------------------------------------------------ consensus_6355#0 TGAAATTAATATTTAGAGCACTTTGTCTCTGCTGGGATCGACAGACTCAGGACTTGCATA 1020 consensus_6355#1 ------------------------------------------------------------ consensus_6355#0 TTGACTGGATACTGTTTAGAGGGCGTCCACTGGTTCCTGCACTCTGTGAAGTCATAAATG 1080 consensus_6355#1 ------------------GAGGGCGTCCACTGGTTCCTGCACTCTGTGAAGTCATAAATG 42 ****************************************** consensus_6355#0 ACAATATTGATGGTGTTTATCCTTCTTCACATTTTCCCATATTTGCTGAATTTTTGCTTC 1140 consensus_6355#1 ACAATATTGATGGTGTTTATCCTTCTTCACATTTTCCCATATTTGCTGAATTTTTGCTTC 102 ************************************************************ consensus_6355#0 CACGCTCCGTCCGCCTAGTGGAGACACCATAATCGTTTTGTGTGTTCTTTTTGCCATACC 1200 consensus_6355#1 CACGCTCCGTCCGCCTAGTGGAGACACCATAATCGTTTTGTGTGTTCTTTTTGCCAAACC 162 ******************************************************** *** consensus_6355#0 ATTTCTTTTTCATCATTAATGTTTCTTTTTGGTTAAATTGTTTGTTTATTTTTATTTTCT 1260 consensus_6355#1 ATTTCTTTTTCATCATTAATGTTTCTTTTTGGTTAAAAAAAAAAAAAAAAAAAAAAAAAA 222 ************************************* * * consensus_6355#0 CTCTG-TCGCGTTTTGTTTGCCTTGATCATACACGTTACATGTACTCCTGTAGTCCTGTG 1319 consensus_6355#1 AAAAACTCGAGACT---------------------------------------------- 236 *** * * consensus_6355#0 CAGAATCTGGGCCAA 1334 consensus_6355#1 --------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||