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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6360#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1368 fasta sequence
[ACCGCCACGCGCATTCCATTTCGACGACGAGGCGGCGGAGCTAGGGTTTGCGGCTTCTCTTCCTCGGCCTATCTCTCTCGTCTCAGGTGAATTTGTTGTGTTTGTGGTGGGGGACTTGGAGGGGAGATGATGGAGGAGGGGTTGGCGGTGGCGGATCTACGGGAGCTAGTGCATCTGCCGGATGTTCTGGTGGTATGCACTTCTGTTGGATGGACAAATGAAAAACACATGCTCTATCTTAGTTTATTGGAAGAATCATTTGTAAGCCAATTACATGACAGTAAATACAGTTTCAAGGAACTGTTTAATCACTCTCCAGGTGCTTGTATACATGAACTATCATCGAAGGGACATGTTAAAAATGTGGAGGCTGAGCAGGAACATATGGATGTAGATGAAGTTGACAGAGCTGAATCTTGGATAAAGATTGAACATGTCAGATCACCTTCTGAAAATCAAGATGACGTAAAAGTGTGTTTTTCAGATGATAATGCATCAAGTACCAGGCTGATTCAAGAGTGCTATGCAAGGGCAACAAGCTCTGGACAATCTTCCACGTGCCATTTAGGCAAGAACAGACATTCCCCTTCTAGGAGTGCAGAGGGTTCAGATCAAAACTTCATTGATGAGGAGACAAAAGGAAGTGGAGAACCAAATGGACGATGCAGCAAAAAGCGACTGAAGTCTACTGCTAATACGATGGACGATCAAGTAATGAGGGGTACCTTTGAGGGCCTGTATGGATAAGGGTAGTTTCTTGAAATTTTTTGGGTTTAGCTACAATTTGAACTAAATACTAAACTTTCTCGGATCCCCTTATCCAAACACCCCTTAATTGTGTTATGTTTTCTTCATACTTTGTGACTTCGTTTCTAACCTTTTGACATTGCATGGCCTCGTAGGTGGTTCCATTTGTGAAGGCAGAGTTACAGGAAGCAAGAGAAAAGGATGCAGATATCCATGACAACTCAATGGAAGCGGATGCTAAAGGTCACGAGCCACAAGGATAATGCCCATCCACGAAGTGTTCTTCAAGCCTGACTAACAACACTCACTCAGTAACTTTAAATCACCATGACATCTAGATCGTAGAGGAGAACTCACTTCGTGCAAGCTTGTAAGGTTGGTTAGACTTAAAACTATCCACTTTGTAAGATAAAGTGTTTTTTTAGAGTGTAGCTTTTCCAGCTCTTGATAATGGTTAGTAGGGAACCAAAGTGTTCTGTTTGGGTCTAGAAAAGNTTTGNTTGGTGTGGAGTGCAACCAGCATAAACCAGCTTGNTTGGTGCACCCGACTGTGAAAGTGTGACTTAGCTNCAGAGTTCAGAAAGATGTGCGACCGTGATTGCCAAAAAAAAAAAAAAAAAA]
[+] EMBL AK066033 [ACCGCCACGCGCATTCCATTTCGACGACGAGGCGGCGGAGCTAGGGTTTGCGGCTTCTCTTCCTCGGCCTATCTCTCTCGTCTCAGGTGAATTTGTTGTGTTTGTGGTGGGGGACTTGGAGGGGAGATGATGGAGGAGGGGTTGGCGGTGGCGGATCTACGGGAGCTAGTGCATCTGCCGGATGTTCTGGTGGTATGCACTTCTGTTGGATGGACAAATGAAAAACACATGCTCTATCTTAGTTTATTGGAAGAATCATTTGTAAGCCAATTACATGACAGTAAATACAGTTTCAAGGAACTGTTTAATCACTCTCCAGGTGCTTGTATACATGAACTATCATCGAAGGGACATGTTAAAAATGTGGAGGCTGAGCAGGAACATATGGATGTAGATGAAGTTGACAGAGCTGAATCTTGGATAAAGATTGAACATGTCAGATCACCTTCTGAAAATCAAGATGACGTAAAAGTGTGTTTTTCAGATGATAATGCATCAAGTACCAGGCTGATTCAAGAGTGCTATGCAAGGGCAACAAGCTCTGGACAATCTTCCACGTGCCATTTAGGCAAGAACAGACATTCCCCTTCTAGGAGTGCAGAGGGTTCAGATCAAAACTTCATTGATGAGGAGACAAAAGGAAGTGGAGAACCAAATGGACGATGCAGCAAAAAGCGACTGAAGTCTACTGCTAATACGATGGACGATCAAGTAATGAAGGGTACCTTTGAGGGCCTGTATGGATAAGGGTAGTTTCTTGAAATTTTTTGGGTTTAGCTACAATTTGAACTAAATACTAAACTTTCTCGGATCCCCTTATCCAAACACCCCTTAATTGTGTTATGTTTTCTTCATACTTTGTGACTTCGTTTCTAACCTTTTGACATTGCATGGCCTCGTAGGTGGTTCCATTTGTGAAGGCAGAGTTACAGGAAGCAAGAGAAAAGGATGCAGATATCCATGACAACTCAATGGAAGCGGATGCTAAAGGTCACGAGCCACAAGGATAATGCCCATCCACGAAGTGTTCTTCAAGCCTGACTAACAA CACTCAGTAACTTTAAATCACCATGACATCTAGATCGTAGAGGAGAATTCACTTAGTGCAAGCTTGTAAGGTTGGTTAGACTTAAAACTATCCACCTTGTAAGATAAAGTGTTTTTTTAGAGTGTAGCTTTTCCAGCTCTTGATAATGGTTAGTAGGGAACCAAAGTGTTCT ]
[+] EMBL CA767035 [ AACCAAATGGACGATGCAGCAAAAAGCGACTGAAGTCTACTGCTAATACGATGGACGATCAAGTAATGAGGGGTACCTTTGAGGGCCTGTATGGATAAGGGTAGTTTCTTGAAATTTTTTGGGTTTAGCTACAATTTGAACTAAATACTAAACTTTCTCGGATCCCCTTATCCAAACACCCCTTAATTGTGTTATGTTTTCTTCATACTTTGTGACTTCGTTTCTAACCTTTTGACATTGCATGGCCTCGTAGGTGGTTCCATTTGTGAAGGCAGAGTTACAGGAAGCAAGAGAAAAGGATGCAGATATCCATGACAACTCAATGGAAGCGGATGCTAAAGGTCACGAGCCACAAGGATAATGCCCATCCACGAAGTGTTCTTCAAGCCTGACTAACAACACTCACTCAGTAACTTTAAATCACCATGACATCTAGATCGTAGAGGAGAACTCACTTCGTGCAAGCTTGTAAGGTTGGTTAGACTTAAAACTATCCACTTTGTAAGATAAAGTGTTTTTTTAGAGTGTAGCTTTTCCAGCTCTTGATAATGGTTAGTAGGGAACCAAAGTGTTCTGTTTGGGTCTAGAAAAGNTTTGNTTGGTGTGGAGTGCAACCAGCATAAACCAGCTTGNTTGGTGCACCCGACTGTGAAAGTGTGACTTAGCTNCAGAGTTCAGAAAGATGTGCGACCGTGATTG ]
[-] EMBL CA761875 [ GACTGAAGTTTACTGCTAATACGATGGCCGATCAAGTAATGAGGGGTACCTTTGAGGGCCTGTATGGATAAGGGTAGTTTCTTGAAATTTTTTGGGTTTAGCTACAATGTGAACTAAATACTAAACTTTCTCGGATCCCCTTATCCAAACACCCCTTAATTGTGTTATGTTTTCTTCATACTTTGTGACTTCGTTTCTAACCTTTTGACATTGCATGGCCTGGTAGGTGGTTCCATTTGTGAAGGCAGAGTTACAGGAAGCAAGAGAAAAGGATGCAGATATCCATGACAACTCAATGGAAGCGGATGCTAAAGGTCACGAGCCCCAAGGATAATGCCCATCCACGAAGTGTTCTTCAAGCCTGACTAACAACACTCACTCAGTAACTTTAAATCACCATGACATCTAGATCGTAGAGGAGAACTCACTTCGTGCAAGCTTGTAAGGTTGGTTAGACTTAAAACTATCCCCTTTGTAAGATAAAGTGTTTTTTTAGAGTGTAGCTTTTCCAGCTCTTGATAATGGTTAGTAGGGAACCAAAGTGTTCTGTTTGGGTCTAGAAAAGTTTTGTTTGGTGTGGAGTGCAACCAGCATAAACCAGCTTGTTTGGTGCACCCGACTGTGAAAGTGTGACTTAGCTCCAGAGTTCAGAAAGATGTGCGACCGTGATTGCCAAAAAAAAAAAAAAAAAA]
consensusID : consensus_6360#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 236 fasta sequence
[ATGATAATGCATCAAGTACCAGGCTGATTCAAGAGTGCTATGCAAGGGCAACAAGCTCTGGACAATCTTCCACGTGCCATTTAGGCAAGAACAGACATTCCCCTTCTAGGAGTGCAGGTGGTTCCATTTGTGAAGGCAGAGTTACAGGAAGCAAGAGAAAAGGATGCAGATATCCATGACAACTCAATGGAAGCGGATGCTAAAGGTCACGAGCCACAAGGATAATGCCCATCCAC]
[+] EMBL BE040517 [ATGATAATGCATCAAGTACCAGGCTGATTCAAGAGTGCTATGCAAGGGCAACAAGCTCTGGACAATCTTCCACGTGCCATTTAGGCAAGAACAGACATTCCCCTTCTAGGAGTGCAGGTGGTTCCATTTGTGAAGGCAGAGTTACAGGAAGCAAGAGAAAAGGATGCAGATATCCATGACAACTCAATGGAAGCGGATGCTAAAGGTCACGAGCCACAAGGATAATGCCCATCCAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6360#0 ACCGCCACGCGCATTCCATTTCGACGACGAGGCGGCGGAGCTAGGGTTTGCGGCTTCTCT 60
consensus_6360#1 ------------------------------------------------------------
consensus_6360#0 TCCTCGGCCTATCTCTCTCGTCTCAGGTGAATTTGTTGTGTTTGTGGTGGGGGACTTGGA 120
consensus_6360#1 ------------------------------------------------------------
consensus_6360#0 GGGGAGATGATGGAGGAGGGGTTGGCGGTGGCGGATCTACGGGAGCTAGTGCATCTGCCG 180
consensus_6360#1 ------------------------------------------------------------
consensus_6360#0 GATGTTCTGGTGGTATGCACTTCTGTTGGATGGACAAATGAAAAACACATGCTCTATCTT 240
consensus_6360#1 ------------------------------------------------------------
consensus_6360#0 AGTTTATTGGAAGAATCATTTGTAAGCCAATTACATGACAGTAAATACAGTTTCAAGGAA 300
consensus_6360#1 ------------------------------------------------------------
consensus_6360#0 CTGTTTAATCACTCTCCAGGTGCTTGTATACATGAACTATCATCGAAGGGACATGTTAAA 360
consensus_6360#1 ------------------------------------------------------------
consensus_6360#0 AATGTGGAGGCTGAGCAGGAACATATGGATGTAGATGAAGTTGACAGAGCTGAATCTTGG 420
consensus_6360#1 ------------------------------------------------------------
consensus_6360#0 ATAAAGATTGAACATGTCAGATCACCTTCTGAAAATCAAGATGACGTAAAAGTGTGTTTT 480
consensus_6360#1 ------------------------------------------------------------
consensus_6360#0 TCAGATGATAATGCATCAAGTACCAGGCTGATTCAAGAGTGCTATGCAAGGGCAACAAGC 540
consensus_6360#1 ----ATGATAATGCATCAAGTACCAGGCTGATTCAAGAGTGCTATGCAAGGGCAACAAGC 56
********************************************************
consensus_6360#0 TCTGGACAATCTTCCACGTGCCATTTAGGCAAGAACAGACATTCCCCTTCTAGGAGTGCA 600
consensus_6360#1 TCTGGACAATCTTCCACGTGCCATTTAGGCAAGAACAGACATTCCCCTTCTAGGAGTGCA 116
************************************************************
consensus_6360#0 GAGGGTTCAGATCAAAACTTCATTGATGAGGAGACAAAAGGAAGTGGAGAACCAAATGGA 660
consensus_6360#1 GGTGGTTCCA--------TTTGTGAAGGCAGAGTTACAGGAAGCAAGAGAAAAGGATGCA 168
* ***** ** * * * *** * * * * ***** *** *
consensus_6360#0 CGATGCAGCAAAAAGCGACTGAAGTCTACTGCTAATA-CGATGGACGATCAAGTAATGAG 719
consensus_6360#1 GATATCCATGACAACTCAATGGAAGCGGATGCTAAAGGTCACGAGCCACAAGG--ATAAT 226
* * ** * ** * * ****** * * * * * * ** *
consensus_6360#0 GGGTACCTTTGAGGGCCTGTATGGATAAGGGTAGTTTCTTGAAATTTTTTGGGTTTAGCT 779
consensus_6360#1 GCCCATCCAC-------------------------------------------------- 236
* * *
consensus_6360#0 ACAATTTGAACTAAATACTAAACTTTCTCGGATCCCCTTATCCAAACACCCCTTAATTGT 839
consensus_6360#1 ------------------------------------------------------------
consensus_6360#0 GTTATGTTTTCTTCATACTTTGTGACTTCGTTTCTAACCTTTTGACATTGCATGGCCTCG 899
consensus_6360#1 ------------------------------------------------------------
consensus_6360#0 TAGGTGGTTCCATTTGTGAAGGCAGAGTTACAGGAAGCAAGAGAAAAGGATGCAGATATC 959
consensus_6360#1 ------------------------------------------------------------
consensus_6360#0 CATGACAACTCAATGGAAGCGGATGCTAAAGGTCACGAGCCACAAGGATAATGCCCATCC 1019
consensus_6360#1 ------------------------------------------------------------
consensus_6360#0 ACGAAGTGTTCTTCAAGCCTGACTAACAACACTCACTCAGTAACTTTAAATCACCATGAC 1079
consensus_6360#1 ------------------------------------------------------------
consensus_6360#0 ATCTAGATCGTAGAGGAGAACTCACTTCGTGCAAGCTTGTAAGGTTGGTTAGACTTAAAA 1139
consensus_6360#1 ------------------------------------------------------------
consensus_6360#0 CTATCCACTTTGTAAGATAAAGTGTTTTTTTAGAGTGTAGCTTTTCCAGCTCTTGATAAT 1199
consensus_6360#1 ------------------------------------------------------------
consensus_6360#0 GGTTAGTAGGGAACCAAAGTGTTCTGTTTGGGTCTAGAAAAGNTTTGNTTGGTGTGGAGT 1259
consensus_6360#1 ------------------------------------------------------------
consensus_6360#0 GCAACCAGCATAAACCAGCTTGNTTGGTGCACCCGACTGTGAAAGTGTGACTTAGCTNCA 1319
consensus_6360#1 ------------------------------------------------------------
consensus_6360#0 GAGTTCAGAAAGATGTGCGACCGTGATTGCCAAAAAAAAAAAAAAAAAA 1368
consensus_6360#1 -------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||