These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6361#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1518 fasta sequence [CAGGAGGGGGTGGAGTCCGGCGGTCGCCTCGTGTCTTCCCGACGTACCCCACGTCTGGCGAAGCGAGTGATGTTAATCGTTGGATTTTGGAGATGGAGAGACTCTCCAAAATCCCACTTCCTCCGGGTACTGTGATTCCTTGCACTCGTAGGAGGAAGCCAAAAGACATTTACACCGCCAGGGACGTTGCAAGCACGCCGGACAAGCTCATGATCAGGAAGGCTGCACGCTCGGTTGTTGCCATTGAGACCACCTATTCTGATGGGAAAATCATTGCTGTATTTTCTGGCATCGTTGTCAGTTGGAATGAGACAACTAGGTCTGCAACAATTGTAACTTGTTCTGAAGCTGTGTGCGATGATGGTGCATTGATCGACCCCAAACCCAAGGTGCTTGTGCACTTGCCAAACAATACCATTCTAGATGGACAGTTGCTGTTTTTCAATGACCACTACCGCATTATGTTGTTGGAGGTCGTGTCAGACACTCCATTGCAGCCTGCCAATTTTGGTTCTACCCCAAAATTTGGACAAGATGTGTTTGCTTTGTCAAGGGATTATGAATCATCAATGCACGCTAGGCGTGGCACAGTCTTGTGGCAGGAACCACCAAACGTTTTGGAGTACATGTACTACTGTCTGTCTCTCAGTTGTCAACTAGCCCCGTGTGGCAGTGGAGGATCGGTGATTGACCAGCACGGTGATGTTGTTGGAATGGCAATTGGTGCTCCTCCGAATCCTGATATTCTTCCCATTTCAATTGTGCAAACATGCATTGAAATGTGGACAAAGTTCAGTCGTATTGCTCGTCCAGTGCTTAATATGGAGTTAAGAGCTTTTGAGCTAATAGAAGTTTCCCATCAAGAGGAGATAGAACTTGATCACAATATTAATGATGGCTTCATCGTAGCTGTGGTTTATGATGATTCTACTGCTGTGAGGCTAGGCATTTCTCAGGGAGACATAATTCTTTCCTACAATGGATTGCACGATTTCACTCTACACAAGCTTGAAGAGTTCCTTCTCTCTCTTGGCTGGGAATTACTTGCAAGTGGCGATCCGAGTTGGAATGTAGGTTTAGAGCTTGTGGTATATGATGCAGTTAGACATGCTACTAGATCTATTACCTATCCATT-GGAGTTTTCTGATGC-TTCTGAGCGGGTTCTTCCTCCGTGAGGTATTATGGATAAAAGAGTCTGTCAAGCGATGTGACCAACTGCTACTATGCCTGTGCTTGTTTTTTTGGCTGTGGTAAGGAATTTGAAATGTCAGCTAATGTCCTTTTGATTGACCATATCTAGTACTCTGGTAGGTCCGTGACTTCGTAAATTTTTTGGTGAGATCTGTAAGGATATTGTGATGCAGCCTTTTCTTTGGCTGTGGTAGATATTAGGTACTCTTCTTATCTAGTGGGGTTGTGGCATAGTAAATTTTTTGGTGAGAACTGAAACAGAAATGGATATATTGTGAAGTTGGTGGCTAGGATTACAGAATCAAAAGGGGTTGTGGCATAGTAAAT] [+] EMBL AK105485 [CAGGAGGGGGTGGAGTCCGGCGGTCGCCTCGTGTCTTCCCGACGTACCCCACGTCTGGCGAAGCGAGTGATGTTAATCGTTGGATTTTGGAGATGGAGAGACTCTCCAAAATCCCACTTCCTCCGGGTACTGTGATTCCTTGCACTCGTAGGAGGAAGCCAAAAGACATTTACACCGCCAGGGACGTTGCAAGCACGCCGGACAAGCTCATGATCAGGAAGGCTGCACGCTCGGTTGTTGCCATTGAGACCACCTATTCTGATGGGAAAATCATTGCTGTATTTTCTGGCATCGTTGTCAGTTGGAATGAGACAACTAGGTCTGCAACAATTGTAACTTGTTCTGAAGCTGTGTGCGATGATGGTGCATTGATCGACCCCAAACCCAAGGTGCTTGTGCACTTGCCAAACAATACCATTCTAGATGGACAGTTGCTGTTTTTCAATGACCACTACCGCATTATGTTGTTGGAGGTCGTGTCAGACACTCCATTGCAGCCTGCCAATTTTGGTTCTACCCCAAAATTTGGACAAGATGTGTTTGCTTTGTCAAGGGATTATGAATCATCAATGCACGCTAGGCGTGGCACAGTCTTGTGGCAGGAACCACCAAACGTTTTGGAGTACATGTACTACTGTCTGTCTCTCAGTTGTCAACTAGCCCCGTGTGGCAGTGGAGGATCGGTGATTGACCAGCACGGTGATGTTGTTGGAATGGCAATTGGTGCTCCTCCGAATCCTGATATTCTTCCCATTTCAATTGTGCAAACATGCATTGAAATGTGGACAAAGTTCAGTCGTATTGCTCGTCCAGTGCTTAATATGGAGTTAAGAGCTTTTGAGCTAATAGAAGTTTCCCATCAAGAGGAGATAGAACTTGATCACAATATTAATGATGGCTTCATCGTAGCTGTGGTTTATGATGATTCTACTGCTGTGAGGCTAGGCATTTCTCAGGGAGACATAATTCTTTCCTACAATGGATTGCACGATTTCACTCTACACAAGCTTGAAGAGTTCCTTCTCTCTCTTGGCTGGGAATTACTTGCAAGTGGCGATCCGAGTTGGAATGTAGGTTTAGAGCTTGTGGTATATGATGCAGTTAGACATGCTACTAGATCTATTACCTATCCATT GGAGTTTTCTGATGC TTCTGAGCGGGTTCTTCCTCCGTGAGGTATTATGGATAAAAGAGTCTGTCAAGCGATGTGACCAACTGCTACTATGCCTGTGCTTGTTTTTTTGGCTGTGGTAAGGAATTTGAAATGTCAGCTAATGTCCTTTTGATTGACCATATCTAGTACTCTGGTAGGTCCGTGACTTCGTAAATTTTTTGGTGAGATCTGTAAGGATATTGTGATGCAGCCTTTTCTTTGGCTGTGGTAGATATTAGGTACTCTTCTTATCTAGTGGGGTTGTGGCATAGTAAATTTTTTGGTGAGAACTGAAACAGAAATGGATATATTGTGAAGTTGGTGGCTAGGATTACAGAATCAAAAGGGGTTGTGGCATAGTAAAT] [+] EMBL CB663135 [ CAATTGTAACTTGTTCTGAAGCTGTGTGCGATGATGGTGCATTGATCGACCCCAAACCCAAGGTGCTTGTGCACTTGCCAAACAATACCATTCTAGATGGACAGTTGCTGTTTTTCAATGACCACTACCGCATTATGTTGTTGGAGGTCGTGTCAGACACTCCATTGCAGCCTGCCAATTTTGGTTCTACCCCAAAATTTGGACAAGATGTGTTTGCTTTGTCAAGGGATTATGAATCATCAATGCACGCTAGGCGTGGCACAGTCTTGTGGCAGGAACCACCAAACGTTTTGGAGTACATGTACTACTGTCTGTCTCTCAGTTGTCAACTAGCCCCGTGTGGCAGTGGAGGATCGGTGATTGACCAGCACGGTGATGTTGTTGGAATGGCAATTGGTGCTCCTCCGAATCCTGATATTCTTCCCATTTCAATTGTGCAAACATGCATTGAAATGTGGACAAAGTTCAGTCGTATTGCTCGTCCAGTGCTTAATATGGAGTTAAGAGCTTTTGAGCTAATAGAAGTTTCCCATCAAGAGGAGATAGAACTTGATCACAATATTAATGATGGCTTCATCGTAGCTGTGGTTTATGATGATTCTACTGCTGTGAGGCTAGGCATTTCTCAGGGAGACATAATTCTTTCCTACAATGGATTGCACGATTTCACTCTACACAAGCTTGAAGAGTTCCTTCTCTCTCTTGGCTGGGAATTACTTGCAAGTGGCGATCCGAGTTGGAATGTANGTTTAGAGCTTGTGGTATATGATGCAGTTAGACATGCTACTAGATCTATTACCTATCCATTGGGAG TTTCTGATGCTTTCTGA ] consensusID : consensus_6361#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 429 fasta sequence [CCGGGACGNNCANGTNTGGGCTCGTCCAGTGCTTAATATGGAGTTAAGAGCTTTTGAGCTAATAGAAGTTTCCCATCAAGAGGAGATAGAACTTGATCACANTATTAATGATGGCTTCATCGTAGCTGTGGTTTATGATGATTCTACTGCTGTGAGGCTAGGCATTTCTCAGGGAGACATAATTCTTTCCTACAATGGATTGCACGATTTCACTCTACACAAGGTAAAGAAAAATGTTCTGAACATTTTACTCTTTATATTATTTGANGCTAAAAAATCTATGTCATATGTTTGTCAACTTTTTGTAAGTAGCTTTGAAGAGTTCCTTCTCTCTCTTTGGCTGGGGAATTACTTTGCAAGTGGCGATCCCGAGTTGGAATGTAGGTTAGAGGATACTTGGATGGTTTATGCAATATTAAATGCTTATTT] [+] EMBL C91614 [CCGGGACGNNCANGTNTGGGCTCGTCCAGTGCTTAATATGGAGTTAAGAGCTTTTGAGCTAATAGAAGTTTCCCATCAAGAGGAGATAGAACTTGATCACANTATTAATGATGGCTTCATCGTAGCTGTGGTTTATGATGATTCTACTGCTGTGAGGCTAGGCATTTCTCAGGGAGACATAATTCTTTCCTACAATGGATTGCACGATTTCACTCTACACAAGGTAAAGAAAAATGTTCTGAACATTTTACTCTTTATATTATTTGANGCTAAAAAATCTATGTCATATGTTTGTCAACTTTTTGTAAGTAGCTTTGAAGAGTTCCTTCTCTCTCTTTGGCTGGGGAATTACTTTGCAAGTGGCGATCCCGAGTTGGAATGTAGGTTAGAGGATACTTGGATGGTTTATGCAATATTAAATGCTTATTT] consensusID : consensus_6361#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 224 fasta sequence [TGTGACCAACTGCTACTATGCCTGTGCTTGTTTTTTTGGCTGTGGTAAGGAATTTGAAATGTCAGCTAATGTCCTTTTGATTGACCATATCTAGTACTCTGGTAGGTCCGTGACTTCGTAAATTTTTTGGTGAGATCTGTAAGGATATTGTGATGCAGCCTTTTCTTTGGCTGTGGTAGATATTAGGTACTCTTCTTATCTAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL OSC08591A [TGTGACCAACTGCTACTATGCCTGTGCTTGTTTTTTTGGCTGTGGTAAGGAATTTGAAATGTCAGCTAATGTCCTTTTGATTGACCATATCTAGTACTCTGGTAGGTCCGTGACTTCGTAAATTTTTTGGTGAGATCTGTAAGGATATTGTGATGCAGCCTTTTCTTTGGCTGTGGTAGATATTAGGTACTCTTCTTATCTAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6361#0 CAGGAGGGGGTGGAGTCCGGCGGTCGCCTCGTGTCTTCCCGACGTACCCCACGTCTGGCG 60 consensus_6361#2 ------------------------------------------------------------ consensus_6361#1 ------------------------------------------------------------ consensus_6361#0 AAGCGAGTGATGTTAATCGTTGGATTTTGGAGATGGAGAGACTCTCCAAAATCCCACTTC 120 consensus_6361#2 ------------------------------------------------------------ consensus_6361#1 ------------------------------------------------------------ consensus_6361#0 CTCCGGGTACTGTGATTCCTTGCACTCGTAGGAGGAAGCCAAAAGACATTTACACCGCCA 180 consensus_6361#2 ------------------------------------------------------------ consensus_6361#1 ------------------------------------------------------------ consensus_6361#0 GGGACGTTGCAAGCACGCCGGACAAGCTCATGATCAGGAAGGCTGCACGCTCGGTTGTTG 240 consensus_6361#2 ------------------------------------------------------------ consensus_6361#1 ------------------------------------------------------------ consensus_6361#0 CCATTGAGACCACCTATTCTGATGGGAAAATCATTGCTGTATTTTCTGGCATCGTTGTCA 300 consensus_6361#2 ------------------------------------------------------------ consensus_6361#1 ------------------------------------------------------------ consensus_6361#0 GTTGGAATGAGACAACTAGGTCTGCAACAATTGTAACTTGTTCTGAAGCTGTGTGCGATG 360 consensus_6361#2 ------------------------------------------------------------ consensus_6361#1 ------------------------------------------------------------ consensus_6361#0 ATGGTGCATTGATCGACCCCAAACCCAAGGTGCTTGTGCACTTGCCAAACAATACCATTC 420 consensus_6361#2 ------------------------------------------------------------ consensus_6361#1 ------------------------------------------------------------ consensus_6361#0 TAGATGGACAGTTGCTGTTTTTCAATGACCACTACCGCATTATGTTGTTGGAGGTCGTGT 480 consensus_6361#2 ------------------------------------------------------------ consensus_6361#1 ------------------------------------------------------------ consensus_6361#0 CAGACACTCCATTGCAGCCTGCCAATTTTGGTTCTACCCCAAAATTTGGACAAGATGTGT 540 consensus_6361#2 ------------------------------------------------------------ consensus_6361#1 ------------------------------------------------------------ consensus_6361#0 TTGCTTTGTCAAGGGATTATGAATCATCAATGCACGCTAGGCGTGGCACAGTCTTGTGGC 600 consensus_6361#2 ------------------------------------------------------------ consensus_6361#1 ------------------------------------------------------------ consensus_6361#0 AGGAACCACCAAACGTTTTGGAGTACATGTACTACTGTCTGTCTCTCAGTTGTCAACTAG 660 consensus_6361#2 ------------------------------------------------------------ consensus_6361#1 ------------------------------------------------------------ consensus_6361#0 CCCCGTGTGGCAGTGGAGGATCGGTGATTGACCAGCACGGTGATGTTGTTGGAATGGCAA 720 consensus_6361#2 ------------------------------------------------------------ consensus_6361#1 ------------------------------------------------------------ consensus_6361#0 TTGGTGCTCCTCCGAATCCTGATATTCTTCCCATTTCAATTGTGCAAACATGCATTGAAA 780 consensus_6361#2 ------------------------------------------------------------ consensus_6361#1 ------------------------------------------------------------ consensus_6361#0 TGTGGACAAAGTTCAGTCGTATTGCTCGTCCAGTGCTTAATATGGAGTTAAGAGCTTTTG 840 consensus_6361#2 ------------------------------------------------------------ consensus_6361#1 ------------------------------------------------------------ consensus_6361#0 AGCTAATAGAAGTTTCCCATCAAGAGGAGATAGAACTTGATCACAATATTAATGATGGCT 900 consensus_6361#2 ------------------------------------------------------------ consensus_6361#1 ------------------------------------------------------------ consensus_6361#0 TCATCGTAGCTGTGGTTTATGATGATTCTACTGCTGTGAGGCTAGGCATTTCTCAGGGAG 960 consensus_6361#2 ------------------------------------------------------------ consensus_6361#1 ------------------------------------------------------------ consensus_6361#0 ACATAATTCTTTCCTACAATGGATTGCACGATTTCACTCTACACAAGCTTGAAGAGTTCC 1020 consensus_6361#2 ------------------------------------------------------------ consensus_6361#1 ------------------------------------------------------------ consensus_6361#0 TTCTCTCTCTTGGCTGGGAATTACTTGCAAGTGGCGATCCGAGTTGGAATGTAGGTTTAG 1080 consensus_6361#2 ------------------------------------------------------------ consensus_6361#1 ------------------------------------------------------------ consensus_6361#0 AGCTTGTGGTATATGATGCAGTTAGACATGCTACTAGATCTATTACCTATCCATTGGAGT 1140 consensus_6361#2 ------------------------------------------------------------ consensus_6361#1 ------------------------------------------------------------ consensus_6361#0 TTTCTGATGCTTCTGAGCGGGTTCTTCCTCCGTGAGGTATTATGGATAAAAGAGTCTGTC 1200 consensus_6361#2 ------------------------------------------------------------ consensus_6361#1 ------------------------------------------------------------ consensus_6361#0 AAGCGATGTGACCAACTGCTACTATGCCT-GTGCTTGTTTT----TTTGGCTGTGGTAAG 1255 consensus_6361#2 ------TGTGACCAACTGCTACTATGCCT-GTGCTTGTTTT----TTTGGCTGTGGTAAG 49 consensus_6361#1 --CCGGGACGNNCANGTNTGGGCTCGTCCAGTGCTTAATATGGAGTTAAGAGCTTTTGAG 58 * ** * * * ****** * * ** * * * ** consensus_6361#0 GAATTTGAAATGTCA-GCTAATGTCCTTTTGA--TTGACCATATC--TAGTA----CTCT 1306 consensus_6361#2 GAATTTGAAATGTCA-GCTAATGTCCTTTTGA--TTGACCATATC--TAGTA----CTCT 100 consensus_6361#1 CTAATAGAAGTTTCCCATCAAGAGGAGATAGAACTTGATCACANTATTAATGATGGCTTC 118 * * *** * ** ** * ** **** ** * ** * ** consensus_6361#0 GGTAGGTCCGTGACTTC--GTAAATTTTTTGGTGAGATCTGTAAGGATATTGTGATGCAG 1364 consensus_6361#2 GGTAGGTCCGTGACTTC--GTAAATTTTTTGGTGAGATCTGTAAGGATATTGTGATGCAG 158 consensus_6361#1 ATCGTAGCTGTGGTTTATGATGATTCTACTGCTGTGAGGC-TAGGCATTTCTCAGGGAGA 177 * *** ** * * * * ** ** ** ** * ** * * consensus_6361#0 CCTTTTCTTTGGCTGTGGTAGATATTAGGTACTCTTCTTATCTAGTGGGGTTGTGGCATA 1424 consensus_6361#2 CCTTTTCTTTGGCTGTGGTAGATATTAGGTACTCTTCTTATCTAAAAAAAAAAAAAAAAA 218 consensus_6361#1 CATAATTCTTTCCTACAATGGATTGCACGATTTCACTCTACACAAGGTAAAGAAAAATGT 237 * * * ** ** * *** * * ** ** * consensus_6361#0 GTAAATTTTTTGGTGAGAACTGAAACAGAAATGGATATATTGTGAAGTTGGTGGCTAGGA 1484 consensus_6361#2 AAAAAA------------------------------------------------------ 224 consensus_6361#1 TCTGAACATTTTACTCTTTATATTATTTGANGCTAAAAAATCTATGTCATATGTTTGTCA 297 * consensus_6361#0 TTACAGAATCAAAAGGGGTTGTGGCATAGTAAAT-------------------------- 1518 consensus_6361#2 ------------------------------------------------------------ consensus_6361#1 ACTTTTTGTAAGTAGCTTTGAAGAGTTCCTTCTCTCTCTTTGGCTGGGGAATTACTTTGC 357 consensus_6361#0 ------------------------------------------------------------ consensus_6361#2 ------------------------------------------------------------ consensus_6361#1 AAGTGGCGATCCCGAGTTGGAATGTAGGTTAGAGGATACTTGGATGGTTTATGCAATATT 417 consensus_6361#0 ------------ consensus_6361#2 ------------ consensus_6361#1 AAATGCTTATTT 429 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||