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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6361#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1518 fasta sequence
[CAGGAGGGGGTGGAGTCCGGCGGTCGCCTCGTGTCTTCCCGACGTACCCCACGTCTGGCGAAGCGAGTGATGTTAATCGTTGGATTTTGGAGATGGAGAGACTCTCCAAAATCCCACTTCCTCCGGGTACTGTGATTCCTTGCACTCGTAGGAGGAAGCCAAAAGACATTTACACCGCCAGGGACGTTGCAAGCACGCCGGACAAGCTCATGATCAGGAAGGCTGCACGCTCGGTTGTTGCCATTGAGACCACCTATTCTGATGGGAAAATCATTGCTGTATTTTCTGGCATCGTTGTCAGTTGGAATGAGACAACTAGGTCTGCAACAATTGTAACTTGTTCTGAAGCTGTGTGCGATGATGGTGCATTGATCGACCCCAAACCCAAGGTGCTTGTGCACTTGCCAAACAATACCATTCTAGATGGACAGTTGCTGTTTTTCAATGACCACTACCGCATTATGTTGTTGGAGGTCGTGTCAGACACTCCATTGCAGCCTGCCAATTTTGGTTCTACCCCAAAATTTGGACAAGATGTGTTTGCTTTGTCAAGGGATTATGAATCATCAATGCACGCTAGGCGTGGCACAGTCTTGTGGCAGGAACCACCAAACGTTTTGGAGTACATGTACTACTGTCTGTCTCTCAGTTGTCAACTAGCCCCGTGTGGCAGTGGAGGATCGGTGATTGACCAGCACGGTGATGTTGTTGGAATGGCAATTGGTGCTCCTCCGAATCCTGATATTCTTCCCATTTCAATTGTGCAAACATGCATTGAAATGTGGACAAAGTTCAGTCGTATTGCTCGTCCAGTGCTTAATATGGAGTTAAGAGCTTTTGAGCTAATAGAAGTTTCCCATCAAGAGGAGATAGAACTTGATCACAATATTAATGATGGCTTCATCGTAGCTGTGGTTTATGATGATTCTACTGCTGTGAGGCTAGGCATTTCTCAGGGAGACATAATTCTTTCCTACAATGGATTGCACGATTTCACTCTACACAAGCTTGAAGAGTTCCTTCTCTCTCTTGGCTGGGAATTACTTGCAAGTGGCGATCCGAGTTGGAATGTAGGTTTAGAGCTTGTGGTATATGATGCAGTTAGACATGCTACTAGATCTATTACCTATCCATT-GGAGTTTTCTGATGC-TTCTGAGCGGGTTCTTCCTCCGTGAGGTATTATGGATAAAAGAGTCTGTCAAGCGATGTGACCAACTGCTACTATGCCTGTGCTTGTTTTTTTGGCTGTGGTAAGGAATTTGAAATGTCAGCTAATGTCCTTTTGATTGACCATATCTAGTACTCTGGTAGGTCCGTGACTTCGTAAATTTTTTGGTGAGATCTGTAAGGATATTGTGATGCAGCCTTTTCTTTGGCTGTGGTAGATATTAGGTACTCTTCTTATCTAGTGGGGTTGTGGCATAGTAAATTTTTTGGTGAGAACTGAAACAGAAATGGATATATTGTGAAGTTGGTGGCTAGGATTACAGAATCAAAAGGGGTTGTGGCATAGTAAAT]
[+] EMBL AK105485 [CAGGAGGGGGTGGAGTCCGGCGGTCGCCTCGTGTCTTCCCGACGTACCCCACGTCTGGCGAAGCGAGTGATGTTAATCGTTGGATTTTGGAGATGGAGAGACTCTCCAAAATCCCACTTCCTCCGGGTACTGTGATTCCTTGCACTCGTAGGAGGAAGCCAAAAGACATTTACACCGCCAGGGACGTTGCAAGCACGCCGGACAAGCTCATGATCAGGAAGGCTGCACGCTCGGTTGTTGCCATTGAGACCACCTATTCTGATGGGAAAATCATTGCTGTATTTTCTGGCATCGTTGTCAGTTGGAATGAGACAACTAGGTCTGCAACAATTGTAACTTGTTCTGAAGCTGTGTGCGATGATGGTGCATTGATCGACCCCAAACCCAAGGTGCTTGTGCACTTGCCAAACAATACCATTCTAGATGGACAGTTGCTGTTTTTCAATGACCACTACCGCATTATGTTGTTGGAGGTCGTGTCAGACACTCCATTGCAGCCTGCCAATTTTGGTTCTACCCCAAAATTTGGACAAGATGTGTTTGCTTTGTCAAGGGATTATGAATCATCAATGCACGCTAGGCGTGGCACAGTCTTGTGGCAGGAACCACCAAACGTTTTGGAGTACATGTACTACTGTCTGTCTCTCAGTTGTCAACTAGCCCCGTGTGGCAGTGGAGGATCGGTGATTGACCAGCACGGTGATGTTGTTGGAATGGCAATTGGTGCTCCTCCGAATCCTGATATTCTTCCCATTTCAATTGTGCAAACATGCATTGAAATGTGGACAAAGTTCAGTCGTATTGCTCGTCCAGTGCTTAATATGGAGTTAAGAGCTTTTGAGCTAATAGAAGTTTCCCATCAAGAGGAGATAGAACTTGATCACAATATTAATGATGGCTTCATCGTAGCTGTGGTTTATGATGATTCTACTGCTGTGAGGCTAGGCATTTCTCAGGGAGACATAATTCTTTCCTACAATGGATTGCACGATTTCACTCTACACAAGCTTGAAGAGTTCCTTCTCTCTCTTGGCTGGGAATTACTTGCAAGTGGCGATCCGAGTTGGAATGTAGGTTTAGAGCTTGTGGTATATGATGCAGTTAGACATGCTACTAGATCTATTACCTATCCATT GGAGTTTTCTGATGC TTCTGAGCGGGTTCTTCCTCCGTGAGGTATTATGGATAAAAGAGTCTGTCAAGCGATGTGACCAACTGCTACTATGCCTGTGCTTGTTTTTTTGGCTGTGGTAAGGAATTTGAAATGTCAGCTAATGTCCTTTTGATTGACCATATCTAGTACTCTGGTAGGTCCGTGACTTCGTAAATTTTTTGGTGAGATCTGTAAGGATATTGTGATGCAGCCTTTTCTTTGGCTGTGGTAGATATTAGGTACTCTTCTTATCTAGTGGGGTTGTGGCATAGTAAATTTTTTGGTGAGAACTGAAACAGAAATGGATATATTGTGAAGTTGGTGGCTAGGATTACAGAATCAAAAGGGGTTGTGGCATAGTAAAT]
[+] EMBL CB663135 [ CAATTGTAACTTGTTCTGAAGCTGTGTGCGATGATGGTGCATTGATCGACCCCAAACCCAAGGTGCTTGTGCACTTGCCAAACAATACCATTCTAGATGGACAGTTGCTGTTTTTCAATGACCACTACCGCATTATGTTGTTGGAGGTCGTGTCAGACACTCCATTGCAGCCTGCCAATTTTGGTTCTACCCCAAAATTTGGACAAGATGTGTTTGCTTTGTCAAGGGATTATGAATCATCAATGCACGCTAGGCGTGGCACAGTCTTGTGGCAGGAACCACCAAACGTTTTGGAGTACATGTACTACTGTCTGTCTCTCAGTTGTCAACTAGCCCCGTGTGGCAGTGGAGGATCGGTGATTGACCAGCACGGTGATGTTGTTGGAATGGCAATTGGTGCTCCTCCGAATCCTGATATTCTTCCCATTTCAATTGTGCAAACATGCATTGAAATGTGGACAAAGTTCAGTCGTATTGCTCGTCCAGTGCTTAATATGGAGTTAAGAGCTTTTGAGCTAATAGAAGTTTCCCATCAAGAGGAGATAGAACTTGATCACAATATTAATGATGGCTTCATCGTAGCTGTGGTTTATGATGATTCTACTGCTGTGAGGCTAGGCATTTCTCAGGGAGACATAATTCTTTCCTACAATGGATTGCACGATTTCACTCTACACAAGCTTGAAGAGTTCCTTCTCTCTCTTGGCTGGGAATTACTTGCAAGTGGCGATCCGAGTTGGAATGTANGTTTAGAGCTTGTGGTATATGATGCAGTTAGACATGCTACTAGATCTATTACCTATCCATTGGGAG TTTCTGATGCTTTCTGA ]
consensusID : consensus_6361#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 429 fasta sequence
[CCGGGACGNNCANGTNTGGGCTCGTCCAGTGCTTAATATGGAGTTAAGAGCTTTTGAGCTAATAGAAGTTTCCCATCAAGAGGAGATAGAACTTGATCACANTATTAATGATGGCTTCATCGTAGCTGTGGTTTATGATGATTCTACTGCTGTGAGGCTAGGCATTTCTCAGGGAGACATAATTCTTTCCTACAATGGATTGCACGATTTCACTCTACACAAGGTAAAGAAAAATGTTCTGAACATTTTACTCTTTATATTATTTGANGCTAAAAAATCTATGTCATATGTTTGTCAACTTTTTGTAAGTAGCTTTGAAGAGTTCCTTCTCTCTCTTTGGCTGGGGAATTACTTTGCAAGTGGCGATCCCGAGTTGGAATGTAGGTTAGAGGATACTTGGATGGTTTATGCAATATTAAATGCTTATTT]
[+] EMBL C91614 [CCGGGACGNNCANGTNTGGGCTCGTCCAGTGCTTAATATGGAGTTAAGAGCTTTTGAGCTAATAGAAGTTTCCCATCAAGAGGAGATAGAACTTGATCACANTATTAATGATGGCTTCATCGTAGCTGTGGTTTATGATGATTCTACTGCTGTGAGGCTAGGCATTTCTCAGGGAGACATAATTCTTTCCTACAATGGATTGCACGATTTCACTCTACACAAGGTAAAGAAAAATGTTCTGAACATTTTACTCTTTATATTATTTGANGCTAAAAAATCTATGTCATATGTTTGTCAACTTTTTGTAAGTAGCTTTGAAGAGTTCCTTCTCTCTCTTTGGCTGGGGAATTACTTTGCAAGTGGCGATCCCGAGTTGGAATGTAGGTTAGAGGATACTTGGATGGTTTATGCAATATTAAATGCTTATTT]
consensusID : consensus_6361#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 224 fasta sequence
[TGTGACCAACTGCTACTATGCCTGTGCTTGTTTTTTTGGCTGTGGTAAGGAATTTGAAATGTCAGCTAATGTCCTTTTGATTGACCATATCTAGTACTCTGGTAGGTCCGTGACTTCGTAAATTTTTTGGTGAGATCTGTAAGGATATTGTGATGCAGCCTTTTCTTTGGCTGTGGTAGATATTAGGTACTCTTCTTATCTAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL OSC08591A [TGTGACCAACTGCTACTATGCCTGTGCTTGTTTTTTTGGCTGTGGTAAGGAATTTGAAATGTCAGCTAATGTCCTTTTGATTGACCATATCTAGTACTCTGGTAGGTCCGTGACTTCGTAAATTTTTTGGTGAGATCTGTAAGGATATTGTGATGCAGCCTTTTCTTTGGCTGTGGTAGATATTAGGTACTCTTCTTATCTAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6361#0 CAGGAGGGGGTGGAGTCCGGCGGTCGCCTCGTGTCTTCCCGACGTACCCCACGTCTGGCG 60
consensus_6361#2 ------------------------------------------------------------
consensus_6361#1 ------------------------------------------------------------
consensus_6361#0 AAGCGAGTGATGTTAATCGTTGGATTTTGGAGATGGAGAGACTCTCCAAAATCCCACTTC 120
consensus_6361#2 ------------------------------------------------------------
consensus_6361#1 ------------------------------------------------------------
consensus_6361#0 CTCCGGGTACTGTGATTCCTTGCACTCGTAGGAGGAAGCCAAAAGACATTTACACCGCCA 180
consensus_6361#2 ------------------------------------------------------------
consensus_6361#1 ------------------------------------------------------------
consensus_6361#0 GGGACGTTGCAAGCACGCCGGACAAGCTCATGATCAGGAAGGCTGCACGCTCGGTTGTTG 240
consensus_6361#2 ------------------------------------------------------------
consensus_6361#1 ------------------------------------------------------------
consensus_6361#0 CCATTGAGACCACCTATTCTGATGGGAAAATCATTGCTGTATTTTCTGGCATCGTTGTCA 300
consensus_6361#2 ------------------------------------------------------------
consensus_6361#1 ------------------------------------------------------------
consensus_6361#0 GTTGGAATGAGACAACTAGGTCTGCAACAATTGTAACTTGTTCTGAAGCTGTGTGCGATG 360
consensus_6361#2 ------------------------------------------------------------
consensus_6361#1 ------------------------------------------------------------
consensus_6361#0 ATGGTGCATTGATCGACCCCAAACCCAAGGTGCTTGTGCACTTGCCAAACAATACCATTC 420
consensus_6361#2 ------------------------------------------------------------
consensus_6361#1 ------------------------------------------------------------
consensus_6361#0 TAGATGGACAGTTGCTGTTTTTCAATGACCACTACCGCATTATGTTGTTGGAGGTCGTGT 480
consensus_6361#2 ------------------------------------------------------------
consensus_6361#1 ------------------------------------------------------------
consensus_6361#0 CAGACACTCCATTGCAGCCTGCCAATTTTGGTTCTACCCCAAAATTTGGACAAGATGTGT 540
consensus_6361#2 ------------------------------------------------------------
consensus_6361#1 ------------------------------------------------------------
consensus_6361#0 TTGCTTTGTCAAGGGATTATGAATCATCAATGCACGCTAGGCGTGGCACAGTCTTGTGGC 600
consensus_6361#2 ------------------------------------------------------------
consensus_6361#1 ------------------------------------------------------------
consensus_6361#0 AGGAACCACCAAACGTTTTGGAGTACATGTACTACTGTCTGTCTCTCAGTTGTCAACTAG 660
consensus_6361#2 ------------------------------------------------------------
consensus_6361#1 ------------------------------------------------------------
consensus_6361#0 CCCCGTGTGGCAGTGGAGGATCGGTGATTGACCAGCACGGTGATGTTGTTGGAATGGCAA 720
consensus_6361#2 ------------------------------------------------------------
consensus_6361#1 ------------------------------------------------------------
consensus_6361#0 TTGGTGCTCCTCCGAATCCTGATATTCTTCCCATTTCAATTGTGCAAACATGCATTGAAA 780
consensus_6361#2 ------------------------------------------------------------
consensus_6361#1 ------------------------------------------------------------
consensus_6361#0 TGTGGACAAAGTTCAGTCGTATTGCTCGTCCAGTGCTTAATATGGAGTTAAGAGCTTTTG 840
consensus_6361#2 ------------------------------------------------------------
consensus_6361#1 ------------------------------------------------------------
consensus_6361#0 AGCTAATAGAAGTTTCCCATCAAGAGGAGATAGAACTTGATCACAATATTAATGATGGCT 900
consensus_6361#2 ------------------------------------------------------------
consensus_6361#1 ------------------------------------------------------------
consensus_6361#0 TCATCGTAGCTGTGGTTTATGATGATTCTACTGCTGTGAGGCTAGGCATTTCTCAGGGAG 960
consensus_6361#2 ------------------------------------------------------------
consensus_6361#1 ------------------------------------------------------------
consensus_6361#0 ACATAATTCTTTCCTACAATGGATTGCACGATTTCACTCTACACAAGCTTGAAGAGTTCC 1020
consensus_6361#2 ------------------------------------------------------------
consensus_6361#1 ------------------------------------------------------------
consensus_6361#0 TTCTCTCTCTTGGCTGGGAATTACTTGCAAGTGGCGATCCGAGTTGGAATGTAGGTTTAG 1080
consensus_6361#2 ------------------------------------------------------------
consensus_6361#1 ------------------------------------------------------------
consensus_6361#0 AGCTTGTGGTATATGATGCAGTTAGACATGCTACTAGATCTATTACCTATCCATTGGAGT 1140
consensus_6361#2 ------------------------------------------------------------
consensus_6361#1 ------------------------------------------------------------
consensus_6361#0 TTTCTGATGCTTCTGAGCGGGTTCTTCCTCCGTGAGGTATTATGGATAAAAGAGTCTGTC 1200
consensus_6361#2 ------------------------------------------------------------
consensus_6361#1 ------------------------------------------------------------
consensus_6361#0 AAGCGATGTGACCAACTGCTACTATGCCT-GTGCTTGTTTT----TTTGGCTGTGGTAAG 1255
consensus_6361#2 ------TGTGACCAACTGCTACTATGCCT-GTGCTTGTTTT----TTTGGCTGTGGTAAG 49
consensus_6361#1 --CCGGGACGNNCANGTNTGGGCTCGTCCAGTGCTTAATATGGAGTTAAGAGCTTTTGAG 58
* ** * * * ****** * * ** * * * **
consensus_6361#0 GAATTTGAAATGTCA-GCTAATGTCCTTTTGA--TTGACCATATC--TAGTA----CTCT 1306
consensus_6361#2 GAATTTGAAATGTCA-GCTAATGTCCTTTTGA--TTGACCATATC--TAGTA----CTCT 100
consensus_6361#1 CTAATAGAAGTTTCCCATCAAGAGGAGATAGAACTTGATCACANTATTAATGATGGCTTC 118
* * *** * ** ** * ** **** ** * ** * **
consensus_6361#0 GGTAGGTCCGTGACTTC--GTAAATTTTTTGGTGAGATCTGTAAGGATATTGTGATGCAG 1364
consensus_6361#2 GGTAGGTCCGTGACTTC--GTAAATTTTTTGGTGAGATCTGTAAGGATATTGTGATGCAG 158
consensus_6361#1 ATCGTAGCTGTGGTTTATGATGATTCTACTGCTGTGAGGC-TAGGCATTTCTCAGGGAGA 177
* *** ** * * * * ** ** ** ** * ** * *
consensus_6361#0 CCTTTTCTTTGGCTGTGGTAGATATTAGGTACTCTTCTTATCTAGTGGGGTTGTGGCATA 1424
consensus_6361#2 CCTTTTCTTTGGCTGTGGTAGATATTAGGTACTCTTCTTATCTAAAAAAAAAAAAAAAAA 218
consensus_6361#1 CATAATTCTTTCCTACAATGGATTGCACGATTTCACTCTACACAAGGTAAAGAAAAATGT 237
* * * ** ** * *** * * ** ** *
consensus_6361#0 GTAAATTTTTTGGTGAGAACTGAAACAGAAATGGATATATTGTGAAGTTGGTGGCTAGGA 1484
consensus_6361#2 AAAAAA------------------------------------------------------ 224
consensus_6361#1 TCTGAACATTTTACTCTTTATATTATTTGANGCTAAAAAATCTATGTCATATGTTTGTCA 297
*
consensus_6361#0 TTACAGAATCAAAAGGGGTTGTGGCATAGTAAAT-------------------------- 1518
consensus_6361#2 ------------------------------------------------------------
consensus_6361#1 ACTTTTTGTAAGTAGCTTTGAAGAGTTCCTTCTCTCTCTTTGGCTGGGGAATTACTTTGC 357
consensus_6361#0 ------------------------------------------------------------
consensus_6361#2 ------------------------------------------------------------
consensus_6361#1 AAGTGGCGATCCCGAGTTGGAATGTAGGTTAGAGGATACTTGGATGGTTTATGCAATATT 417
consensus_6361#0 ------------
consensus_6361#2 ------------
consensus_6361#1 AAATGCTTATTT 429
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||