Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 6365 cluster # 6365       Sequences # 4       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6365#0 length = 1252 sequences # 4  

consensusID : consensus_6365#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1252
fasta sequence
                              [CCGCAGGTAGCCTCGGGGTCTCCTCCTCCCGCATCACCACGAATCGTTGCCTCGTAACAACCGTCAAAATCAAATCGAGTCCAAAGTGGCAGGCTCAATCCGATCCGCGAGAGGCCTCCTCCTCCTCCTCCTCGATCCAGATGGCCATGGCGGCGGCGTCGGTTCTCGCCGCCTCGTCCTCCTCCTCCCCTCCTCCGCTCGCGCTCGCGTCGTGGAGATGGAGGCCTCCGCCGCCGCCGCCTCTTCTGGCAGTTGCAGGTGCAGCTCGCGGAGCGACAAATCCCAGGCTCGCTCTCCGCCTGAGCGCTGCGGCGTCTCCTCCGGTTACCGGCGAATCTCGCGCCATCGCGGGGACGGGGCGGTGTCTGGTGGCGCCGATGGGTGGGGACGAGACGGAGCGGGATGCGACGGCTGCGACGGCGCCAGACTGGGGCGCGCTCGCGAGGCGGCTGGCTCTGGGCGCGCTGGGGTGCGCCGTGCTCTGCTGCGGCGGTGCGGCGGTGGCGGCGGAGGACTCGATCAAGGCGTCCGGCTTCGGGCTGCGTGTGGCGGCGTCGCTGCGGAGGCTCGGGTGGGCGGACGAGGCCGTCGTGTTCACGCTCGCTACGCTACCGGTGATCGAGCTGCGCGGGGCCATTCCGGTTGGGTACTGGATGCGCCTCGACCCCATCCGCCTCACCGTCCTATCCGTTCTCGGGAACATGGTGCCTGTGCCATTCATTATCCTCTACCTGAAAAAACTTGCAGCATTTCTCTCTCAAAGAAGCGCATCTGCAACTCGGATTATGGATCTTCTCTTTGAGCGGGCGCGGCAGAAGGCTGCACCTGTTGAGGAATTTCAATGGCTTGGTTTGATGCTGTTTGTGGCTGTACCATTTCCTGGAACTGGAGCATGGACTGGGGCAATAATTTCATCGGTTCTTGGCATGCCATTCTGGTCAGGTTTTTCAGCAAATTTCGTGGGCGTTGTCTTAGCAGGACTGTTGGTAAATTTGCTTATGAATCTTGGTTTGAAGTATGCCATTATCACTGGTTTAGTTCTGTTCTTTTTATCAACTGTCATGTGGGGTGTCCTTCGATCCCTCAAAAAATCACTGAATGCTAAATGATGTAATGAACATGCAACTATTTTTTCGTTGTAAAGAAGAATTCACCCTTGTGAGGGAATTCTAGCTGTAAACTTCTCCCTCTATTTTTCCTATTATACAAAATGAAAATGCTTACCTTTGAGGCCTTCACAGGATCACAAAAA]

[+] EMBL C72465               [CCGCAGGTAGCCTCGGGGTCTCCTCCTCCCGCATCACCACGAATCGTTGCCTCGTAACAACCGTCAAAATCAAATCGAGTCCAAAGTGGCAGGCTCAATCCGATCCGCGAGAGGCCTCCTCCTCCTCCTCCTCGATCCAGATGGCCATGGCGGCGGCGTCGGTTCTCGCCGCCTCGTCCTCCTCCTCCCCTCCTCCGCTCGCGCTCGCGTCGTGGAGATGGAGGCCTCCGCCGCCGCCGCCTCTTCTGGCAGTTGCAGGTGCAGCTCGCGGAG ACCAAATCCCAGGCTCGCTCTCCGCCTGAGCGCTGCGGCGTCTCCTCCGGTTAACGGCGAATCTCGCGCCATCGC GGGACGGGGCGGTGTCTNGTTGCG CGATNGGTTGGGACGAAACGan                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL AK061104             [                                                                       AAATCGAGTCCAAAGTGGCAGGCTCAATCCGATCCGCGAGAGGCCTCCTCCTCCTCCTCCTCGATCCAGATGGCCATGGCGGCGGCGTCGGTTCTCGCCGCCTCGTCCTCCTCCTCCCCTCCTCCGCTCGCGCTCGCGTCGTGGAGATGGAGGCCTCCGCCGCCGCCGCCTCTTCTGGCAGTTGCAGGTGCAGCTCGCGGAGCGACAAATCCCAGGCTCGCTCTCCGCCTGAGCGCTGCGGCGTCTCCTCCGGTTACCGGCGAATCTCGCGCCATCGCGGGGACGGGGCGGTGTCTGGTGGCGCCGATGGGTGGGGACGAGACGGAGCGGGATGCGACGGCTGCGACGGCGCCAGACTGGGGCGCGCTCGCGAGGCGGCTGGCTCTGGGCGCGCTGGGGTGCGCCGTGCTCTGCTGCGGCGGTGCGGCGGTGGCGGCGGAGGACTCGATCAAGGCGTCCGGCTTCGGGCTGCGTGTGGCGGCGTCGCTGCGGAGGCTCGGGTGGGCGGACGAGGCCGTCGTGTTCACGCTCGCTACGCTACCGGTGATCGAGCTGCGCGGGGCCATTCCGGTTGGGTACTGGATGCGCCTCGACCCCATCCGCCTCACCGTCCTATCCGTTCTCGGGAACATGGTGCCTGTGCCATTCATTATCCTCTACCTGAAAAAACTTGCAGCATTTCTCTCTCAAAGAAGCGCATCTGCAACTCGGATTATGGATCTTCTCTTTGAGCGGGCGCGGCAGAAGGCTGCACCTGTTGAGGAATTTCAATGGCTTGGTTTGATGCTGTTTGTGGCTGTACCATTTCCTGGAACTGGAGCATGGACTGGGGCAATAATTTCATCGGTTCTTGGCATGCCATTCTGGTCAGGTTTTTCAGCAAATTTCGTGGGCGTTGTCTTAGCAGGACTGTTGGTAAATTTGCTTATGAATCTTGGTTTGAAGTATGCCATTATCACTGGTTTAGTTCTGTTCTTTTTATCAACTGTCATGTGGGGTGTCCTTCGATCCCTCAAAAAATCACTGAATGCTAAATGATGTAATGAACATGCAACTATTTTTTCGTTGTAAAGAAGAATTCACCCTTGTGAGGGAAa                                                                                    ]
[+] EMBL AK070229             [                                                                                                        CCGCGAGAGGCCTCCTCCTCCTCCTCCTCGATCCAGATGGCCATGGCGGCGGCGTCGGTTCTCGCCGCCTCGTCCTCCTCCTCCCCTCCTCCGCTCGCGCTCGCGTCGTGGAGATGGAGGCCTCCGCCGCCGCCGCCTCTTCTGGCAGTTGCAGGTGCAGCTCGCGGAGCGACAAATCCCAGGCTCGCTCTCCGCCTGAGCGCTGCGGCGTCTCCTCCGGTTACCGGCGAATCTCGCGCCATCGCGGGGACGGGGCGGTGTCTGGTGGCGCCGATGGGTGGGGACGAGACGGAGCGGGATGCGACGGCTGCGACGGCGCCAGACTGGGGCGCGCTCGCGAGGCGGCTGGCTCTGGGCGCGCTGGGGTGCGCCGTGCTCTGCTGCGGCGGTGCGGCGGTGGCGGCGGAGGACTCGATCAAGGCGTCCGGCTTCGGGCTGCGTGTGGCGGCGTCGCTGCGGAGGCTCGGGTGGGCGGACGAGGCCGTCGTGTTCACGCTCGCTACGCTACCGGTGATCGAGCTGCGCGGGGCCATTCCGGTTGGGTACTGGATGCGCCTCGACCCCATCCGCCTCACCGTCCTATCCGTTCTCGGGAACATGGTGCCTGTGCCATTCATTATCCTCTACCTGAAAAAACTTGCAGCATTTCTCTCTCAAAGAAGCGCATCTGCAACTCGGATTATGGATCTTCTCTTTGAGCGGGCGCGGCAGAAGGCTGCACCTGTTGAGGAATTTCAATGGCTTGGTTTGATGCTGTTTGTGGCTGTACCATTTCCTGGAACTGGAGCATGGACTGGGGCAATAATTTCATCGGTTCTTGGCATGCCATTCTGGTCAGGTTTTTCAGCAAATTTCGTGGGCGTTGTCTTAGCAGGACTGTTGGTAAATTTGCTTATGAATCTTGGTTTGAAGTATGCCATTATCACTGGTTTAGTTCTGTTCTTTTTATCAACTGTCATGTGGGGTGTCCTTCGATCCCTCAAAAAATCACTGAATGCTAAATGATGTAATGAACATGCAACTATTTTTTCGTTGTAAAGAAGAATTCACCCTTGTGAGGGAATTCTAGCTGTAAACTTCTCCCTCTATTTTTCCTATTATACAAAATGAAAATGCTTAC                            ]
[+] EMBL AU172518             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           GCAGAAGGCTGCACCTGTTGAGGAATTTCAATGGCTTGGTTTGATGCTGTTTGTGGCTGTACCATTTCCTGGAACTGGAGCATGGACTGGGGCAATAATTTCATCGGTTCTTGGCATGCCATTCTGGTCAGGTTTTTCAGCAAATTTCGTGGGCGTTGTCTTAGCAGGACTGTTGGTAAATTTGCTTATGAATCTTGGTTTGAAGTATGCCATTATCACTGGTTTAGTTCTGTTCTTTTTATCAACTGTCATGTGGGGTGTCCTTCGATCCCTCAAAAAATCACTGAATGCTAAATGATGTAATGAACATGCAACTATTTTTTCGTTGTAAAGAAGAATTCACCCTTGTGAGGGAATTCTAGCTGTAAACTTCTCCCTCTATTTTTCCTATTATACAAAATGAAAATGCTTACCTTTGAGGCCTTCACAGGATCACAAAAA]


>consensus_6365#0 CCGCAGGTAGCCTCGGGGTCTCCTCCTCCCGCATCACCACGAATCGTTGCCTCGTAACAA CCGTCAAAATCAAATCGAGTCCAAAGTGGCAGGCTCAATCCGATCCGCGAGAGGCCTCCT CCTCCTCCTCCTCGATCCAGATGGCCATGGCGGCGGCGTCGGTTCTCGCCGCCTCGTCCT CCTCCTCCCCTCCTCCGCTCGCGCTCGCGTCGTGGAGATGGAGGCCTCCGCCGCCGCCGC CTCTTCTGGCAGTTGCAGGTGCAGCTCGCGGAGCGACAAATCCCAGGCTCGCTCTCCGCC TGAGCGCTGCGGCGTCTCCTCCGGTTACCGGCGAATCTCGCGCCATCGCGGGGACGGGGC GGTGTCTGGTGGCGCCGATGGGTGGGGACGAGACGGAGCGGGATGCGACGGCTGCGACGG CGCCAGACTGGGGCGCGCTCGCGAGGCGGCTGGCTCTGGGCGCGCTGGGGTGCGCCGTGC TCTGCTGCGGCGGTGCGGCGGTGGCGGCGGAGGACTCGATCAAGGCGTCCGGCTTCGGGC TGCGTGTGGCGGCGTCGCTGCGGAGGCTCGGGTGGGCGGACGAGGCCGTCGTGTTCACGC TCGCTACGCTACCGGTGATCGAGCTGCGCGGGGCCATTCCGGTTGGGTACTGGATGCGCC TCGACCCCATCCGCCTCACCGTCCTATCCGTTCTCGGGAACATGGTGCCTGTGCCATTCA TTATCCTCTACCTGAAAAAACTTGCAGCATTTCTCTCTCAAAGAAGCGCATCTGCAACTC GGATTATGGATCTTCTCTTTGAGCGGGCGCGGCAGAAGGCTGCACCTGTTGAGGAATTTC AATGGCTTGGTTTGATGCTGTTTGTGGCTGTACCATTTCCTGGAACTGGAGCATGGACTG GGGCAATAATTTCATCGGTTCTTGGCATGCCATTCTGGTCAGGTTTTTCAGCAAATTTCG TGGGCGTTGTCTTAGCAGGACTGTTGGTAAATTTGCTTATGAATCTTGGTTTGAAGTATG CCATTATCACTGGTTTAGTTCTGTTCTTTTTATCAACTGTCATGTGGGGTGTCCTTCGAT CCCTCAAAAAATCACTGAATGCTAAATGATGTAATGAACATGCAACTATTTTTTCGTTGT AAAGAAGAATTCACCCTTGTGAGGGAATTCTAGCTGTAAACTTCTCCCTCTATTTTTCCT ATTATACAAAATGAAAATGCTTACCTTTGAGGCCTTCACAGGATCACAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)