These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6369#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 716 fasta sequence [TAGTCTCGAGTTTTTTTTTTTTTTTTTTAGAAAAGGAAGATTTTATATAAAACCAAATAATCACTTCAGACCAAAAAACAAGAGTGTGATTGCTTAGCACTTGACACACACACACCACGCATACACTACTACACAAATCGTTTTTTCGTGCGGTCGATCGGATTTTTGCATGCGGAGCCTCGGCCCGTCTGGAACAAATCGCTTGGGAAAATCACGATTTTCTCTTGCCGGTGGCTTATGCCGCCCGCACGGAAAAACAAAAAACCAAAAAAAAATTAAGATTTCAAAAAAAAACAGAAAACCCTAGATTGGGTCGTCGCCGCCGCTCTAGCCTCGTCGGCGGCGGTGGTGGCGTCGCCGCTCCCGCCTCGTCATCGTTGTCGTCGGCGGCGGCGCCGCCTCCCGCCGGCCTCCAGCGCCGGATCCGTGGCGGGGGCAGGGCGGCCGGCCACCGGATCTAGGCGGAGACGGCCGCGTGCCGTTGTCACCCGCCCGCCCGCCGGATCCGCAGCCCGCGCGCTCCCGTCGCCACCGGGGAAGGGAGGGGAGGAGCCGTGGCCGCCCGCCCGTCCGCCAGATCTGCCGCCCGTGCGCTCCCTTCGCCGCAGGGAAGGGGAGGAGCCGCAGGCCGCCCGTCCCGCCTGTGCCCGCCGCCGCCTCCCCACATCCGCCTGCTGCCACCGAGCTCACCACCGTCCCGCCTGTGGAGAAGGAGG] [+] EMBL CF325926 [TAGTCTCGAGTTTTTTTTTTTTTTTTTTAGAAAAGGAAGATTTTATATAAAACCAAATAATCACTTCAGACCAAAAAACAAGAGTGTGATTGCTTAGCACTTGACACACACACACCACGCATACACTACTACACAAATCGTTTTTTCGTGCGGTCGATCGGATTTTTGCATGCGGAGCCTCGGCCCGTCTGGAACAAATCGCTTGGGAAAATCACGATTTTCTCTTGCCGGTGGCTTATGCCGCCCGCACGGAAAAACAAAAAACCAAAAAAAAATTAAGATTTCAAAAAAAAACAGAAAACCCTAGATTGGGTCGTCGCCGCCGCTCTAGC ] [-] EMBL AU182641 [ AANCAGAAAACCCTAGATTGGGTCGTCGCCGCCGCTCTAGCCTCGTCGGCGGCGGTGGTGGCGTCGCCGCTCCCGCCTCGTCATCGTTGTCGTCGGCGGCGGCGCCGCCTCCCGCCGGCCTCCAGCGCCGGATCCGTGGCGGGGGCAGGGCGGCCGGCCACCGGATCTAGGCGGAGACGGCCGCGTGCCGTTGTCACCCGCCCGCCCGCCGGATCCGCAGCCCGCGCGCTCCCGTCGCCACCGGGGAAGGGAGGGGAGGAGCCGTGGCCGCCCGCCCGTCCGCCAGATCTGCCGCCCGTGCGCTCCCTTCGCCGCAGGGAAGGGGAGGAGCCGCAGGCCGCCCGTCCCGCCTGTGCCCGCCGCCGCCTCCCCACATCCGCCTGCTGCCACCGAGCTCACCACCGTCCCGCCTGTGGAGAAGGAGG] consensusID : consensus_6369#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 434 fasta sequence [CCACAAAAAATTAAATTNAAAAAAAACAGAAACCTTAATTGGTCGTGCCGCGCTCTAACTCGTGGCGCAGTGNTGCGTCGCCGGTTCNGCCTCGTNATCGTTGTCAGGTGGCGCGCCGCCTCCCGCGGCCTCCAACGCCGGATCCGTGCGGGGGCAGGCGGCCGGCCACCGGATCTAGCGGAAGACGCCGCGTGCCGTCGTCACACGCCCGCCCGCCGGATCCGNAGCCCGCGCGCTCCCGTCGCCACCGGGGAAGGGAGGGGAGGAGCCGTGGCCGCCCGCCCGTCCGCCAGATCTGCCGCCCGTGCGCTCCCTTCGCCGCAGGGAAGGGGAGGAGCCGCAGGCCGCCCGTCCCGCCTGTGCCCGCCGCCGCCTCCCCACATCCGCCTGCTGCCACCGAGCTCACCACCGTCCCGCCTGTGGAGAAGGAGGCA] [-] EMBL C74063 [CCACAAAAAATTAAATTNAAAAAAAACAGAAACCTTAATTGGTCGTGCCGCGCTCTAACTCGTGGCGCAGTGNTGCGTCGCCGGTTCNGCCTCGTNATCGTTGTCAGGTGGCGCGCCGCCTCCCGCGGCCTCCAACGCCGGATCCGTGCGGGGGCAGGCGGCCGGCCACCGGATCTAGCGGAAGACGCCGCGTGCCGTCGTCACACGCCCGCCCGCCGGATCCGNAGCCCGCGCGCTCCCGTCGCCACCGGGGAAGGGAGGGGAGGAGCCGTGGCCGCCCGCCCGTCCGCCAGATCTGCCGCCCGTGCGCTCCCTTCGCCGCAGGGAAGGGGAGGAGCCGCAGGCCGCCCGTCCCGCCTGTGCCCGCCGCCGCCTCCCCACATCCGCCTGCTGCCACCGAGCTCACCACCGTCCCGCCTGTGGAGAAGGAGGCA] consensusID : consensus_6369#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 385 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTCAGNCCAAAAAACAAGAGTGTGATTGCTTAGCACTTGACACACACACACCACGCATACACTACTACACAAAGCGTTTTTTCGTGCGGTCGATCGGATTTTTGCATGCGGANCTCGGCCCGTCTGGAACAAATCGCTTGGGAAAATCACGATTTTCTCTTGCCGGTGGCTTATGCCGCCCGCACGGAAAAACAAAAAACCAAAAAAAAATTAAGATTTCAAAAAAAAACAGAAAACCCTAGATTGGGTCGTCGCCGNCGCTCTAGCCTCGTCGGNGGCGGTGGTGGCGTCGCCGCTCCCGCCTCGTCATCGTTGTCGTCGGCGGCGGCGCGCTTCTCCGCCGGCCTCCANCGCCGGAATCCG] [-] EMBL AU029395 [TTTTTTTTTTTTTTTTTTTTTTTTCAGNCCAAAAAACAAGAGTGTGATTGCTTAGCACTTGACACACACACACCACGCATACACTACTACACAAAGCGTTTTTTCGTGCGGTCGATCGGATTTTTGCATGCGGANCTCGGCCCGTCTGGAACAAATCGCTTGGGAAAATCACGATTTTCTCTTGCCGGTGGCTTATGCCGCCCGCACGGAAAAACAAAAAACCAAAAAAAAATTAAGATTTCAAAAAAAAACAGAAAACCCTAGATTGGGTCGTCGCCGNCGCTCTAGCCTCGTCGGNGGCGGTGGTGGCGTCGCCGCTCCCGCCTCGTCATCGTTGTCGTCGGCGGCGGCGCGCTTCTCCGCCGGCCTCCANCGCCGGAATCCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6369#0 TAGTCTCGAGTTTTTTTTTTTTTTTTTTAGAAAAGGAAGATTTTATATAAAACCAAATAA 60 consensus_6369#1 ------------------------------------------------------------ consensus_6369#2 ------------------------------------------------------------ consensus_6369#0 TCACTTCAGACCAAAAAACAAGAGTGTGATTGCTTAGCACTTGACACACACACACCACGC 120 consensus_6369#1 ------------------------------------------------------------ consensus_6369#2 ------------------------------------------------------------ consensus_6369#0 ATACACTACTACACAAATCGTTTTTTCGTGCGGTCGATCGGATTTTTGCATGCGGAGCCT 180 consensus_6369#1 ------------------------------------------------------------ consensus_6369#2 ------------------------------------------------------------ consensus_6369#0 CGGCCCGTCTGGAACAAATCGCTTGGGAAAATCACGATTTTCTCTTGCCGGTGGCTTATG 240 consensus_6369#1 ------------------------------------------------------------ consensus_6369#2 ------------------------------------------------------------ consensus_6369#0 CCGCCCGCACGGAAAAACAAAAAACCAAAAAAAAATTAAGATTTCAAAAAAAAACAGAAA 300 consensus_6369#1 -------------------------CCACAAAAAATTAAA---TTNAAAAAAAACAGAAA 32 consensus_6369#2 ----------------------------------------------------------TT 2 consensus_6369#0 ACCCTAGATTGGGTCGTCGCCGCCGCTCTAGCCTCGTCGGCGGCGGTGGTGGCGTCGCCG 360 consensus_6369#1 --CCTTAATTGG-TCGT-GCCGC-GCTCTAAC-TCGT-GGCG-CAGTGNTG-CGTCGCCG 83 consensus_6369#2 TTTTTTTTTTTTTTTTTTTTTTCAGNCCAAAAAACAAGAGTGTGATTGCTT-AGCACTTG 61 * ** * * * * * * * * * ** * * * consensus_6369#0 CTCCCGCCTCGTCATCGTTGTCGTCGGCG-GCGGCGCCGCCTCCCGCCGGCCTCCAGCGC 419 consensus_6369#1 GTTCNGCCTCGTNATCGTTGTCA--GGTG-GCG-CGCCGCCTCCCGC-GGCCTCCAACGC 138 consensus_6369#2 ACACACACACACCA-CGCATACACTACTACACAAAGCGTTTTTTCGT--GCGGTCGAT-- 116 * * * * ** * * ** * ** ** * consensus_6369#0 CGGATCCGTGGCGGGGGCAGGGCGGCCGGCCACCGGATCTAGGCGGAGACGGCCGCGTGC 479 consensus_6369#1 CGGATCCGTG-CGGGGGCAGG-CGGCCGGCCACCGGATCTAGCGGAAGACG-CCGCGTGC 195 consensus_6369#2 CGGATTTTTG-CATGCGGANCTCGGCCCGTC--TGGAACAAATCGCTTGGG-AAAATCAC 172 ***** ** * * * * ***** * * *** * * * * * consensus_6369#0 CGTTGTCACCCGCCCGCCCGCCGGATCCGCAGCCCGCGCGCTCCCGTCGCCACCGGGGAA 539 consensus_6369#1 CGTCGTCACACGCCCGCCCGCCGGATCCGNAGCCCGCGCGCTCCCGTCGCCACCGGGGAA 255 consensus_6369#2 GATTTTCTCTTGCCGGTGGCTTATGCCGCCCGCACGGAAAAACAAAAAACCAAAAAAAAA 232 * ** * *** * * ** ** * *** ** consensus_6369#0 GGGAGGGGAGGAGCCGTGGCCGCCCGCCCGTCCGCCAGATCTGCCGCCCGTGCGCTCCCT 599 consensus_6369#1 GGGAGGGGAGGAGCCGTGGCCGCCCGCCCGTCCGCCAGATCTGCCGCCCGTGCGCTCCCT 315 consensus_6369#2 TTAAGATTTCAAAAAAAAACAGAAAACCC-TAGATTGGGTC-GTCGCCGNCGCTCTAGCC 290 ** * * * *** * * ** * **** ** ** * consensus_6369#0 TCGCCGCAGGGAAGGGGAGGAGCCGCAGGCCGCCCGTCCCGCCTGTGCCCGCCGCCGCCT 659 consensus_6369#1 TCGCCGCAGGGAAGGGGAGGAGCCGCAGGCCGCCCGTCCCGCCTGTGCCCGCCGCCGCCT 375 consensus_6369#2 TCGTCG-GNGGCGGTGGTGGCGTCGCCGCTCCCGCCTCGTCATCGTTGTCGTCGGCGGCG 349 *** ** ** * ** ** * *** * * * * ** ** ** ** ** * consensus_6369#0 CCCCACATCCGCCTGCTGCCACCGAGCTCACCACCGTCCCGCCTGTGGAGAAGGAGG-- 716 consensus_6369#1 CCCCACATCCGCCTGCTGCCACCGAGCTCACCACCGTCCCGCCTGTGGAGAAGGAGGCA 434 consensus_6369#2 GCGCGCTTC--TCCGCCGGCCTCCANC--GCCGGAATCCG------------------- 385 * * * ** * ** * * * * * ** *** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||