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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6377#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1439 fasta sequence
[TAACTTGATTTGAAATCTTAGGCACCAGGTAACTCATGAATCTCAAGACAGTTTATAATCACCGAATCACAAAGGTTAGCGTTTGAAACAAATTATTCAGCAGATTACTCCCACGGATTGTCTACTTGATTACAGGGATAAATTAAACATTTTATGAAATAAACTGAACAGATAGCTTAGAAGTGTGGCCGTGGAGCAAATAACCCACAGCAATAATCCAGTGGATAAGCTAAAAAGAACAGGGCAAGCTAAACGTGCTATGTTAAGGGAAAGGGAAGTACAAAGCTTGATAATTTCTCAGGCACAACAATGAATACCAAAACTTTGATGCCGGCATCAAATAACCGAATGAAACTATTCTCTAGTTCACAGTTTTAGGTTCAGGCATCCAGAAATCATCCCAACGTTAAGGGCTTAAGGCCGATGCAAACAAATTGGGTGTGCTTATTCTGTTGATTTATCCAGGGAACCATATATTGTTACCCTCCAAATCCAATCGGACCATGTGAAAGAAATCGCATCATACCAAGTTTGTTTAGGTTTCTCTATCGAATTCCCCACAAGGTCTGCAATGATGATGCTTCAACACAAGATCCGGCTAGATCAACATATTGTTATCTGGTGATCACAGTAATCTGGAGGGCAAAAGTGCATATCAGTAGCTCAGCACTGCAAAATGTGAGAAATACATGAACTCTTATGCTTTCAATTAAAGCTGGGTGGGTGACCGTCTTTCCTCTAAAATGTGAGAAATACAGAGATGATGCAAATGTCTCAAAGATGGGTTTTGGTGACAACAAAAAAACCCAAATCGCTCGTGGGAATGATCATCATACATTGATCGCAAAAATCTAAACCTTTGGCAGAATGGTTTCGAGTACGAGCACTGAATTTCCAAAGGCCACTTAGCATTCTCCATTTCACCTATCTCCTCCCAATCTAGGATCACCTACTACTAAGCAAGGAACCAAACATTGCATCGAGCTCAAATGATGCAGTAATTGTTTTGTAACATGTAAACCTTTCTTTTCAAGCTGCGGGGGCTTACTTTGTCACGGGCCGGAGGTTGGCTTGCCGGGCCCAGACAGCGGCGGCTGCTGCGGCGGCGGAGGAGGAGTGGAAGCCGCCTGCGACTCCTCGGCGGCGGCGAGTTGGCGGAGGCGGGCCTGGAGTCCGCGGACTCGGTCCTCGGTGCGGCGGAGCTTGCACCAGCGCCAGGTGAGGTAGGCGGCGAGGCCGCCGTAGACGAGGATGTAGGATCCCCACACGTATGGGTAGGTCTCCGCGTGCTCCTTCGTCTTCCGCCACTGCTCCTCCAGCTTCGCGATCACGCCGCCTCCATATGCCGCCACCCCAGCCTCCGCCGCCGCAGCCTCCGGTTGCTGCTCCGGCTGCCGCGTCGCCTTCGCGTCCTCACCGTCCCCGGCGGCCGCGGCGAT]
[+] EMBL CB643917 [TAACTTGATTTGAAATCTTAGGCACCAGGTAACTCATGAATCTCAAGACAGTTTATAATCACCGAATCACAAAGGTTAGCGTTTGAAACAAATTATTCAGCAGATTACTCCCACGGATTGTCTACTTGATTACAGGGATAAATTAAACATTTTATGAAATAAACTGAACAGATAGCTTAGAAGTGTGGCCGTGGAGCAAATAACCCACAGCAATAATCCAGTGGATAAGCTAAAAAGAACAGGGCAAGCTAAACGTGCTATGTTAAGGGAAAGGGAAGTACAAAGCTTGATAATTTCTCAGGCACAACAATGAATACCAAAACTTTGATGCCGGCATCAAATAACCGAATGAAACTATTCTCTAGTTCACAGTTTTAGGTTCAGGCATCCAGAAATCATCCCAACGTTAAGGGCTTAAGGCCGATGCAAACAAATTGGGTGTGCTTATTCTGTTGATTTATCCAGGGAACCATATATTGTTACCCTCCAAATCCAATCGGACCATGTGAAAGAAATCGCATCATACCAAGTTTGTTTAGGTTTCTCTATCGAATTCCCCACAAGGTCTGCAATGATGATGCTTCAACACAAGATCCGGCTAGATCAACATATTGTTATCTGGTGATCACAGTAATCTGGAGGGCAAAAGTGCATATCAGTAGCTCAGCACTGCAAAATGTGAGAAATACATGAACTCTTATGCTTTCAATTAAAGCTGGGTGGGTGACCGTCTTTCCTCTAAAATGTGAGAAATACAGAGATGATGCAAATGTCTCAAAGATGGGTTTTGGTGACAACAAAAAAACCCAAATCGCTCGTGGGAATGATCATC ]
[-] EMBL CB643916 [ TGCATATCAGTAGCTCAGCACTGCAAAATGTGAGAAATACATGAACTCTTATGCTTTCAATTATAGCTGGGTGGGTGACCGTCTTTCCTCTAAAATGTGAGAAATACAGAGATGATGCAAATGTCTCAAAGATGGGTTTTGGTGACAACAAAAAAACCCAAATCGCTCGTGGGAATGATCATCATACATTGATCGCAAAAATCTAAACCTTTGGCAGAATGGTTTCGAGTACGAGCACTGAATTTCCAAAGGCCACTTAGCATTCTCCATTTCACCTATCTCCTCCCAATCTAGGATCACCTACTACTAAGCAAGGAACCAAACATTGCATCGAGCTCAAATGATGCAGTAATTGTTTTGTAACATGTAAACCTTTCTTTTCAAGCTGCGGGGGCTTACTTTGTCACGGGCCGGAGGTTGGCTTGCCGGGCCCAGACAGCGGCGGCTGCTGCGGCGGCGGAGGAGGAGTGGAAGCCGCCTGCGACTCCTCGGCGGCGGCGAGTTGGCGGAGGCGGGCCTGGAGTCCGCGGACTCGGTCCTCGGTGCGGCGGAGCTTGCACCAGCGCCAGGTGAGGTAGGCGGCGAGGCCGCCGTAGACGAGGATGTAGGATCCCCACACGTATGGGTAGGTCTCCGCGTGCTCCTTCGTCTTCCGCCACTGCTCCTCCAGCTTCGCGATCACGCCGCCTCCATATGCCGCCACCCCAGCCTCCGCCGCCGCAGCCTCCGGTTGCTGCTCCGGCTGCCGCGTCGCCTTCGCGTCCTCACCGTCCCCGGCGGCCGCGGCGAT]
[-] EMBL AK058707 [ TTATGCTTTCAATTAAAGCTGGGTGGGTGACCGTCTTTCCTCTAAAATGTGAGAAATACAGAGATGATGCAAATGTCTCAAAGATGGGTTTTGGTGACAACAAAAAAACCCAAATCGCTCGTGGGAATGATCATCATACATTGATCGCAAAAATCTAAACCTTTGGCAGAATGGTTTCGAGTACGAGCACTGAATTTCCAAAGGCCACTTAGCATTCTCCATTTCACCTATCTCCTCCCAATCTAGGATCACCTACTACTAAGCAAGGAACCAAACATTGCATCGAGCTCAAATGATGCAGTAATTGTTTTGTAACATGTAAACCTTTCTTTTCAAGCTGCGGGGGCTTACTTTGTCACGGGCCGGAGGTTGGCTTGCCGGGCCCAGACAGCGGCGGCTGCTGCGGCGGCGGAGGAGGAGTGGAAGCCGCCTGCGACTCCTCGGCGGCGGCGAGTTGGCGGAGGCGGGCCTGGAGTCCGCGGACTCGGTCCTCGGTGCGGCGGAGCTTGCACCAGCGCCAGGTGAGGTAGGCGGCGAGGCCGCCGTAGACGAGGATGTAGGATCCCCACACGTATGGGTAGGTCTCCGCGTGCTCCTTCGTCTTCCGCCACTGCTCCTCCAGCTTCGCGATCACGCCGCCTCCATATGCCGCCACCCCAGCCTCCGCCGCCGCAGCCTCCG ]
consensusID : consensus_6377#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 449 fasta sequence
[TTTTTTTTCTTATGCTTTCAATTAAAGCTGGGTGGGTGACCGTCTTTCCTCTAAAATGTGAGAAATACAGAGATGATGCAAATGTCTCAAAGATGGGTTTTGGTGACAACAAAAAAACCCAAATCGCTCGTGGGAATGATCATCATACATTGATCGCAAAAATCTAAACCTTTGGCAGAATGGTTTCGAGTACGAGCACTGAATTTCCAAAGGCCACTTAGCATTCTCCATTTCACCTATCTCCTCCCAATCTAGGATCACCTACTACTAAGCAAGGAACCAAACATTGCATCGAGCTCAAATGATGCAGTAATTGTTTTGTAACATGTAAACCTTTCTTTTCAAGCTGCGGGGGCTTACTTTGTCACGGGCCGGAGGTTGGCTTGCCGGGCCCAGACAGCGGCGGCTGCTGCGGCTGCCGCGTCGCCTTCGCGTCCTCACCGTCCCCG]
[-] EMBL CF326251 [TTTTTTTTCTTATGCTTTCAATTAAAGCTGGGTGGGTGACCGTCTTTCCTCTAAAATGTGAGAAATACAGAGATGATGCAAATGTCTCAAAGATGGGTTTTGGTGACAACAAAAAAACCCAAATCGCTCGTGGGAATGATCATCATACATTGATCGCAAAAATCTAAACCTTTGGCAGAATGGTTTCGAGTACGAGCACTGAATTTCCAAAGGCCACTTAGCATTCTCCATTTCACCTATCTCCTCCCAATCTAGGATCACCTACTACTAAGCAAGGAACCAAACATTGCATCGAGCTCAAATGATGCAGTAATTGTTTTGTAACATGTAAACCTTTCTTTTCAAGCTGCGGGGGCTTACTTTGTCACGGGCCGGAGGTTGGCTTGCCGGGCCCAGACAGCGGCGGCTGCTGCGGCTGCCGCGTCGCCTTCGCGTCCTCACCGTCCCCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6377#0 TAACTTGATTTGAAATCTTAGGCACCAGGTAACTCATGAATCTCAAGACAGTTTATAATC 60
consensus_6377#1 ------------------------------------------------------------
consensus_6377#0 ACCGAATCACAAAGGTTAGCGTTTGAAACAAATTATTCAGCAGATTACTCCCACGGATTG 120
consensus_6377#1 ------------------------------------------------------------
consensus_6377#0 TCTACTTGATTACAGGGATAAATTAAACATTTTATGAAATAAACTGAACAGATAGCTTAG 180
consensus_6377#1 ------------------------------------------------------------
consensus_6377#0 AAGTGTGGCCGTGGAGCAAATAACCCACAGCAATAATCCAGTGGATAAGCTAAAAAGAAC 240
consensus_6377#1 ------------------------------------------------------------
consensus_6377#0 AGGGCAAGCTAAACGTGCTATGTTAAGGGAAAGGGAAGTACAAAGCTTGATAATTTCTCA 300
consensus_6377#1 ------------------------------------------------------------
consensus_6377#0 GGCACAACAATGAATACCAAAACTTTGATGCCGGCATCAAATAACCGAATGAAACTATTC 360
consensus_6377#1 ------------------------------------------------------------
consensus_6377#0 TCTAGTTCACAGTTTTAGGTTCAGGCATCCAGAAATCATCCCAACGTTAAGGGCTTAAGG 420
consensus_6377#1 ------------------------------------------------------------
consensus_6377#0 CCGATGCAAACAAATTGGGTGTGCTTATTCTGTTGATTTATCCAGGGAACCATATATTGT 480
consensus_6377#1 ------------------------------------------------------------
consensus_6377#0 TACCCTCCAAATCCAATCGGACCATGTGAAAGAAATCGCATCATACCAAGTTTGTTTAGG 540
consensus_6377#1 ------------------------------------------------------------
consensus_6377#0 TTTCTCTATCGAATTCCCCACAAGGTCTGCAATGATGATGCTTCAACACAAGATCCGGCT 600
consensus_6377#1 ------------------------------------------------------------
consensus_6377#0 AGATCAACATATTGTTATCTGGTGATCACAGTAATCTGGAGGGCAAAAGTGCATATCAGT 660
consensus_6377#1 ------------------------------------------------------------
consensus_6377#0 AGCTCAGCACTGCAAAATGTGAGAAATACATGAACTCTTATGCTTTCAATTAAAGCTGGG 720
consensus_6377#1 ----------------------------TTTTTTTTCTTATGCTTTCAATTAAAGCTGGG 32
* *************************
consensus_6377#0 TGGGTGACCGTCTTTCCTCTAAAATGTGAGAAATACAGAGATGATGCAAATGTCTCAAAG 780
consensus_6377#1 TGGGTGACCGTCTTTCCTCTAAAATGTGAGAAATACAGAGATGATGCAAATGTCTCAAAG 92
************************************************************
consensus_6377#0 ATGGGTTTTGGTGACAACAAAAAAACCCAAATCGCTCGTGGGAATGATCATCATACATTG 840
consensus_6377#1 ATGGGTTTTGGTGACAACAAAAAAACCCAAATCGCTCGTGGGAATGATCATCATACATTG 152
************************************************************
consensus_6377#0 ATCGCAAAAATCTAAACCTTTGGCAGAATGGTTTCGAGTACGAGCACTGAATTTCCAAAG 900
consensus_6377#1 ATCGCAAAAATCTAAACCTTTGGCAGAATGGTTTCGAGTACGAGCACTGAATTTCCAAAG 212
************************************************************
consensus_6377#0 GCCACTTAGCATTCTCCATTTCACCTATCTCCTCCCAATCTAGGATCACCTACTACTAAG 960
consensus_6377#1 GCCACTTAGCATTCTCCATTTCACCTATCTCCTCCCAATCTAGGATCACCTACTACTAAG 272
************************************************************
consensus_6377#0 CAAGGAACCAAACATTGCATCGAGCTCAAATGATGCAGTAATTGTTTTGTAACATGTAAA 1020
consensus_6377#1 CAAGGAACCAAACATTGCATCGAGCTCAAATGATGCAGTAATTGTTTTGTAACATGTAAA 332
************************************************************
consensus_6377#0 CCTTTCTTTTCAAGCTGCGGGGGCTTACTTTGTCACGGGCCGGAGGTTGGCTTGCCGGGC 1080
consensus_6377#1 CCTTTCTTTTCAAGCTGCGGGGGCTTACTTTGTCACGGGCCGGAGGTTGGCTTGCCGGGC 392
************************************************************
consensus_6377#0 CCAGACAGCGGCGGCTGCTGCGGCGGCGGAGGAGGAGTGGAAGCCGCCTGCGACTCCTCG 1140
consensus_6377#1 CCAGACAGCGGCGGCTGCTGCGGCTGCCGCG------------TCGCCTTCGCGTCCTCA 440
************************ ** * * ***** ** *****
consensus_6377#0 GCGGCGGCGAGTTGGCGGAGGCGGGCCTGGAGTCCGCGGACTCGGTCCTCGGTGCGGCGG 1200
consensus_6377#1 CCGTCCCCG--------------------------------------------------- 449
** * **
consensus_6377#0 AGCTTGCACCAGCGCCAGGTGAGGTAGGCGGCGAGGCCGCCGTAGACGAGGATGTAGGAT 1260
consensus_6377#1 ------------------------------------------------------------
consensus_6377#0 CCCCACACGTATGGGTAGGTCTCCGCGTGCTCCTTCGTCTTCCGCCACTGCTCCTCCAGC 1320
consensus_6377#1 ------------------------------------------------------------
consensus_6377#0 TTCGCGATCACGCCGCCTCCATATGCCGCCACCCCAGCCTCCGCCGCCGCAGCCTCCGGT 1380
consensus_6377#1 ------------------------------------------------------------
consensus_6377#0 TGCTGCTCCGGCTGCCGCGTCGCCTTCGCGTCCTCACCGTCCCCGGCGGCCGCGGCGAT 1439
consensus_6377#1 -----------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||