These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6379#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 771 fasta sequence [CAGTCGTTGTGCAGAGGAGAGTCTCCTTTGCTTCCCAAGTTGCCATCCATGGCCGCCAAGGTGTACAAGCCGGCCGCCGAGGTCAATCTCGGCCCGGACAGCGACGAGTTCTACATCAGCCCTAACGTCAAAGCTCCTCGGGTAGCAGGGCTGCTGGTGAAGATCTTCGTGTGGATTCTTGAGATGCCGATCATCGGCTCAATGGTGCTTTACATCCTCAAGAAGGATAATCTCATCAACAAGCTTGTCCAAGATGCTGAAATCCCAGAGCCTCCACTGTTCAC-TTCCACACACAGCTGGGAAGACATTCCAGAGCAGAATGTGTGCCTGACGAAGCCGGACCTGTCG-CCGCCGGAGCG-TGTCCAGGAAGCCGTC-AGC-TGCCTCCCTGCGAGCCTCG-AATCGACCCTCGCCGGCTCGCCGCCGTCGAGCCCGAAACGCTGGACGATCAGGGATTTCAACAGGGCGTACAGCTCAGGGGAGGTCACTCCTGTTCAGGTTGCAAAGAGGTTCTTGGCTGCAGTGAAGGAGTGCTCAGGCCCAGGCCTCAACATGGCCTTCTTCATCAGCTACAGCCCTGAAGACATCATCAGGCAGGCTGAAGAATCCACCCTGAGATACCAGAGAGGGACACCTCTGTCTGCCATGGACGGGATACTGGTCGCTGTCAAGGACGAGATCGACTGTTTGCCCTACCCAACCACAGGCGGGACGCGGTGGCTGGGGCGGGCGCGGGCGTGCGCGGCGGACGCTGCGGTGGTGGCGCAACTGCTC] [+] EMBL CB684669 [CAGTCCCTTTGCAGAGGAGAGTCTCCTTTGCTTCCCAAGTTGCCATCCATGGCCGCCAAGGTGTACAAGCCGGCCGCCGAGGTCAATCTCGGCCCGGACAGCGACGAGTTCTACATCAGCCCTAACGTCAAAGCTCCTCGGGTAGCAGGGCTGCTGGTGAAGATCTTCGTGTGGATTCTTGAGATGCCGATCATCGGCTCAATGGTGCTTTACATCCTCAAGAAGGATAATCTCATCAACAAGCTTGTCCAAGATGCTGAAATCCCAGAGCCTCCACTGTTCAC TTCCACACACAGCTGGGAAGACATTCCAGAGCAGAATGTGTGCCTGACGAAGCCGGACCTGTCG CCGCCGGAGCG TGTCCAGGAAGCCGTC AGC TGCCTCCCTGCGAGCCTCG AATCGACCCTCGCCGGCTCGCCGCCGTCGAGCCCGAAACGCTGGACGATCAGGGATTTCAACAGGGCGTACAGCTCAGGGGAGGTCACTCCTGTTCAGGTTGCAAAGAGGTTCTTGGCTGCAGTGAAGGAGTGCTCAGGCCCAGGCCTCAACATGGCCTTCTTCATCAGCTACAGCCCTGAAGACATCATCAGGCAGGCTGAAGAATCCACCCTGAGATACCAGAGAGGGACACCTCTGTCTGCCATGGACGGGATACTGGTCGCTGTCAAGGACGAGATCGACTGTTTGCCCTACCCAACCACAGGCGGGACGCGGTGGCTGGGGCGGGCGCGGGCGTGCGCGGCGGACGCTGCGGTGGTGGCGCAACTGCTC] [+] EMBL C73741 [CAGTCGTTGTGCAGAGGAGAGTCTCCTTTGCTTCCCAAGTTGCCATCCATGGCCGCCAAGGTGTACAAGCCGGCCGCCGAGGTCAATCTCGGCCCGGACAGCGACGAGTTCTACATCAGCCCTAACGTCAAAGCTCCTCGGGTAGCAGGGCTGCTGGTGAAGATCTTCGTGTGGATTCTTGAGATGCCGATCATCGGCTCAATGGTGCTTTACATCCTCAAGAAGGATAATCTCATCAACAAGCTTGTCCAAGATGCTGAAATCCCAGAGCCTCCACTGTTCAC TTCCACACACAGCTGGGAAGACATTCCAGAGCAGAATGTGTGCCTGACGAAGCCGGACCTGTCG CCGCCGGAGCG TGTCCAGGAAGCCGTC AGCTTGCCTCCCTGCGAGCCTTGAAATCGACCCTTGCCGGCTNGCCG CGTCGAGCCCGAAACGt ] [+] EMBL C73745 [ AGTCGTTGTGCAGAGGAGAGTCTCCTTTGCTTCCCAAGTTGCCATCCATGGCCGCCAAGGTGTACAAGCCGGCCGCCGAGGTCAATCTCGGCCCGGACAGCGACGAGTTCTACATCAGCCCTAACGTCAAAGCTCCTCGGGTAGCAGGGCTGCTGGTGAAGATCTTCGTGTGGATTCTTGAGATGCCGATCATCGGCTCAATGGTGCTTTACATCCTCAAGAAGGATAATCTCATCAACAAGCTTGTCCAAGATGCTGAAATCCCAGAGCCTCCACTGTTCACTTTCCACACACAGCTGGGAAGACATTNCAGAGCAGAATGTGTGCCTGACGAAGCCGGACCTGTCGCCCGCCGGAGCGTTGTCCAGGAAGCCGTCAAGT TGCCTtc ] consensusID : consensus_6379#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 679 fasta sequence [GCAGTTTCGTCAGAGGCGGAGCGAAGCCGGGTCCCACGTGAGATATTAGTGGGTGAGAGTGGTTTGCGGGAATTAAATGGAGGCGATTTGTTTGCCTCGCGTGGTAGGGACTTGTCAGGTCGGAATACATTACTGTAGAAGACTAGTAGTTGGTTATCGGCCATTGTAGCGCCCCATTATTAAATCCTAGAAATTGCAAAAAATTATCAAGAACAGCTCCATTGTTTCAGGTTGCAAATAGGTTTTTGGGTGCAATGAAGGAGTGCTCAGGCACAGGCCTCAACATGGCCTTTTTTATCAGCTACAGCCCTGAAGACATTATCAGGCAGGCTGAAGAATCCCCCCTGAGATTCCAGAGAGGTTAAAAAAAAGAACATTCTTTTACCCTGAAATTAAGTTACAGTTGGCAGTAACAGTATTTGAAGCAAGAGCAATGCATGGAAGTTGCAATTATCATCAGCAGAAGCAGCAGCCCACAGGAATGGCCTGAACTTGTCCCTTTCAAACCAACTCACCACCACCTTTTTGTTTTGACCTCTAGCCAGCCAACCAAACTTTTTTGTACCCCCTTGGTAACAACCAGGAGGCAGTTCAACTTCAGCTACATACACAAGCAACCCTCCAAACAATTTTTTCAGTTTTTTTTTTTCTGTTTTGACATCTTGAAAAAAAAAAAAAA] [-] EMBL CA760450 [GCAGTTTCGTCAGAGGCGGAGCGAAGCCGGGTCCCACGTGAGATATTAGTGGGTGAGAGTGGTTTGCGGGAATTAAATGGAGGCGATTTGTTTGCCTCGCGTGGTAGGGACTTGTCAGGTCGGAATACATTACTGTAGAAGACTAGTAGTTGGTTATCGGCCATTGTAGCGCCCCATTATTAAATCCTAGAAATTGCAAAAAATTATCAAGAACAGCTCCATTGTTTCAGGTTGCAAATAGGTTTTTGGGTGCAATGAAGGAGTGCTCAGGCACAGGCCTCAACATGGCCTTTTTTATCAGCTACAGCCCTGAAGACATTATCAGGCAGGCTGAAGAATCCCCCCTGAGATTCCAGAGAGGTTAAAAAAAAGAACATTCTTTTACCCTGAAATTAAGTTACAGTTGGCAGTAACAGTATTTGAAGCAAGAGCAATGCATGGAAGTTGCAATTATCATCAGCAGAAGCAGCAGCCCACAGGAATGGCCTGAACTTGTCCCTTTCAAACCAACTCACCACCACCTTTTTGTTTTGACCTCTAGCCAGCCAACCAAACTTTTTTGTACCCCCTTGGTAACAACCAGGAGGCAGTTCAACTTCAGCTACATACACAAGCAACCCTCCAAACAATTTTTTCAGTTTTTTTTTTTCTGTTTTGACATCTTGAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6379#0 CAGTCGTTGTGCAGAGGAGAGTCTCCTTTGCTTCCCAAGTTGCCATCCATGGCCGCCAAG 60 consensus_6379#1 -----------------GCAGTTTCGTCAGAGGCG-GAGCGA--AGCCGGGTCCCACGTG 40 *** ** * * * ** * ** * ** * * consensus_6379#0 GTGTACAAGCCGGCCGCCGAGGTCAATCTCGGCCCGGACAGCGACGAGTTCTACATCAGC 120 consensus_6379#1 AGATATTAGTGGGTGAGAGTGGTTTG-CGGGAATTAAATGGAGGCGATTTGTTTGCC--T 97 ** ** ** * *** * * * * * *** ** * * consensus_6379#0 CCTAACGTCAAAGCTCCTCGGGTAGCAGGGC--TGCTGGTGAAGATCTTCGTGTGGATTC 178 consensus_6379#1 CGCGTGGTAGGGACTTGTCAGGTCGGAATACATTACTGTAGAAGA-CTAGTAGTTGGTTA 156 * ** ** ** *** * * * * *** ***** ** ** * ** consensus_6379#0 TTGAGATGCCGATCATCGGCTCAATGGTGCTTTACATCCTCAAGAAGG-ATAATCTCATC 237 consensus_6379#1 TCG-GCCATTG--TAGCGCCCCATTA-----TTAAATCCTAGAAATTGCAAAAAATTATC 208 * * * * * ** * ** * *** ***** * * * * ** * *** consensus_6379#0 AACAAGCTTGTCCAAGATGCTGAAATCCCAGAGCCTCCACTGTTCACTTCCACACACAGC 297 consensus_6379#1 AA-GAACAGCTCCATTGT-TTCAGGTTGCAAA---TAGGTTTTTGGGTGCAATGAAGGAG 263 ** * * **** * * * * ** * * * ** * * * * consensus_6379#0 TGGGAAGACATTCCAGAGCAGAATGTGTGCCTGACGAAGCCGGACCTGTCGCCGCCGGAG 357 consensus_6379#1 TGCTCAGGCA---CAGGCCTCAACATG-GCCTTTTTTATCAG---CTACAGCCCTGAAGA 316 ** ** ** *** * ** ** **** * * * ** *** consensus_6379#0 CGTGTCCAGGAAGCCGTCAGCTGCCTCCCTGCGAGCCTCGAA----TCGACCCTCGCCGG 413 consensus_6379#1 CATTATCAGGCAGGCTGAAGAATCCCCCCTGAGATTCCAGAGAGGTTAAAAAAAAGAACA 376 * * **** ** * ** ** ***** ** * ** * * * consensus_6379#0 CTCGCCGCCGTCGAGCCCGAA--ACGCTGGACGATCAGGGATTTCAACAGGGCGTACAGC 471 consensus_6379#1 TTCTTTTACCCTGAAATTAAGTTACAGTTGGCAGTAACAGTATTTGA-AGCAAGAGCAAT 435 ** * ** * ** * * * * * * ** * ** * ** consensus_6379#0 TCAGGGGAGGT-CACTCCTGTTCAGGTTGCAAAGAGGTTCTTGGCTGCAGTGAAGGAGTG 530 consensus_6379#1 GCATGGAAGTTGCAATTATCATCAGCAGAAGCAGCAGCCCACAGGAATGGCCTGAACTTG 495 ** ** ** * ** * * **** ** * * * * ** consensus_6379#0 CTCAGGCCCAGGC--CTCAACATGGCCTTCTTCATCAGCTACAGCCCTGAAGACATCATC 588 consensus_6379#1 TCCCTTTCAAACCAACTCACCACCACCTTTTTGTTTTG----ACCTCTAGCCAGCCAACC 551 * * * * **** ** **** ** * * * * ** * * * consensus_6379#0 AGGCAGGCTGAAGAATCCACCCTGAGATACCAGAGAGGGACACCTCTGTCTGCCATGGAC 648 consensus_6379#1 AAACT--TTTTTGTACCCCCTTGGTAACAACCAGGAGGCAGTTCAACTTCAGCTACATAC 609 * * * * * ** * * * * * **** * * ** ** * ** consensus_6379#0 GGGATACTGGTCGCTGTCAAGGACGAGATCGACTGTTTGCCCTACCCAACCACAGGCGGG 708 consensus_6379#1 ---ACAAGCAACCCTCCAAACAATTTTTTCAGTTTTTTTTTTTCTGTTTTGACATCTTGA 666 * * * ** ** * ** * *** * *** * consensus_6379#0 ACGCGGTGGCTGGGGCGGGCGCGGGCGTGCGCGGCGGACGCTGCGGTGGTGGCGCAACTG 768 consensus_6379#1 AAAAAAAAAAAAA----------------------------------------------- 679 * consensus_6379#0 CTC 771 consensus_6379#1 --- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||