cluster # 6383

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 6383 cluster # 6383 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6383#0 length = 544 sequences # 2

consensus_6383#1 length = 479 sequences # 2

consensusID : consensus_6383#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 544
fasta sequence

                              [GTCGTGGAGAGACCCGGTCCCNAGAGATCAGCGGCGTACAGGCGCGCGGCCGCGGTGGCACCCGACGCGTGCCCGGGGGGACCGAGCGCTTCATCTTGCGCGCGAGGCGTACGAGGTGCTCTCCGACCCGGAGCGGAGGCGCGGCTACTGACATCCACGCTCCGCTGCTCGGCGCCGGTCCCGGGGCCCACGGCGGCCGGCGGCCGGGTTCCCGACTGGGAGGCNCNGCTCCCCGGGCTCCCGTGGCGGGCCGCGTCGCCGGGAGACNTGGGGGACAGGATGCGCCCCCGTCACCGTCTCCGTCCTGAGCCGAGAATCCAGAATTCNCCGTGGCTTTTTTGAATTTTGAATTTTTGTTGAGTTTTCTCTTTTTCTTTCACTTTTTTTTCCTCTTCTGTAGCCTTCCTTGGGATGTGTATATACCATACGGAGTATTAGGATATGATCTATAGGTGGTACCTGGTAGTAGTATAGATTATAGAAGAATGTACCAATTTCAAACCTTTTGAATTCTGATACCTACTTTTTGGGAGGAAAAAAAAAA]

[+] EMBL BI806462             [GTCGTGGAGAGACCCGGTCCCNAGAGATCAGCGGCGTACAGGCGCGCGGCCGCGGTGGCACCCGACGCGTGCCCGGGGGGACCGAGCGCTTCATCTTGCGCGCGAGGCGTACGAGGTGCTCTCCGACCCGGAGCGGAGGCGCGGCTACTGACATCCACGCTCCGCTGCTCGGCGCCGGTCCCGGGGCCCACGGCGGCCGGCGGCCGGGTTCCCGACTGGGAGGCNCNGCTCCCCGGGCTCCCGTGGCGGGCCGCGTCGCCGGGAGACNTGGGGGACAGGATGCGCCCCCGTCACCGTCTCCGTCCTGAGCCGAGAATCCAGAATTCNCCGTGGCTTTTTTGAATTTTGAATTTTTGTTGAGTTTTCTCTTTTTCTTTCACTTTTTTTTCCTCTTCTGTAGCCTTCCTTGGGATGTGTATATACCATACGGAGTATTAGGATATGATCTATAGGTGGTACCTGGTAGTAGTATAGATTATAGAAGAATGTACCAATTTCAAACCTTTTGAATTCTGATACCTACTTTTTGGGAGGAAAAAAAAAA]
[+] EMBL OSR09011A            [                                                                                                                                                                                                                                                                                                                                                                                                   TCCTCTTCTGTAGCCTTCCTTGGGATGTGTATATACCATACGGAGTATTAGGATATGATCTATAGGTGGTACATGGTAGTAG       TATAGAAGAATGTACAAATTTCAAACATTTTGAATTCTGATACCTACTTTTTGGGAGGAAAAAAAAAA]




>consensus_6383#0
GTCGTGGAGAGACCCGGTCCCNAGAGATCAGCGGCGTACAGGCGCGCGGCCGCGGTGGCA
CCCGACGCGTGCCCGGGGGGACCGAGCGCTTCATCTTGCGCGCGAGGCGTACGAGGTGCT
CTCCGACCCGGAGCGGAGGCGCGGCTACTGACATCCACGCTCCGCTGCTCGGCGCCGGTC
CCGGGGCCCACGGCGGCCGGCGGCCGGGTTCCCGACTGGGAGGCNCNGCTCCCCGGGCTC
CCGTGGCGGGCCGCGTCGCCGGGAGACNTGGGGGACAGGATGCGCCCCCGTCACCGTCTC
CGTCCTGAGCCGAGAATCCAGAATTCNCCGTGGCTTTTTTGAATTTTGAATTTTTGTTGA
GTTTTCTCTTTTTCTTTCACTTTTTTTTCCTCTTCTGTAGCCTTCCTTGGGATGTGTATA
TACCATACGGAGTATTAGGATATGATCTATAGGTGGTACCTGGTAGTAGTATAGATTATA
GAAGAATGTACCAATTTCAAACCTTTTGAATTCTGATACCTACTTTTTGGGAGGAAAAAA
AAAA

consensusID : consensus_6383#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 479
fasta sequence

                              [GAACAAACAGCTATCACCCCGCGATCCATTTGCCCAATCAGATCAAGGCGTGTAGATTTGATTTTGGTTTTATTACTCGCAACCTGCACGTTGCCCTCAGTCACCTGGCGGCGGAGAGAGAGATCGGAGATGAGCTCGGTGTGCGCGAGGCCCGTCGGCGTGGGGTACCTTGTCGGCGAGGC-GC-AGCTCGCCGGGCTCCAGTGGCGGGCCGCGTCGCGGGAGACGTGGGGGAGCAGGATGCGCCACCGTCAGCCGTCTCCGTCCTGAGCCGAGAATCGCAGAATTCGCAGTGGCTTTTTTTGAATTTTGAATTTGTGTTGAGTTTTCTCTTTTTCTTTCACTTTTTTTTTCCTCTTCTGTAGCCTTCCTTGGGATGTGTATATACCATACGGAGTATTAGGATATGATCTATAGGTGGTACATGGTAGTAGTATAGAAGAATGTACAAATTTCAAACATTTTGAATTCTGATACCTACT]

[+] EMBL AK107871             [GAACAAACAGCTATCACCCCGCGATCCATTTGCCCAATCAGATCAAGGCGTGTAGATTTGATTTTGGTTTTATTACTCGCAACCTGCACGTTGCCCTCAGTCACCTGGCGGCGGAGAGAGAGATCGGAGATGAGCTCGGTGTGCGCGAGGCCCGTCGGCGTGGGGTACCTTGTCGGCGAGGC GC AGCTCGCCGGGCTCCAGTGGCGGGCCGCGTCGCGGGAGACGTGGGGGAGCAGGATGCGCCACCGTCAGCCGTCTCCGTCCTGAGCCGAGAATCGCAGAATTCGCAGTGGCTTTTTTTGAATTTTGAATTTGTGTTGAGTTTTCTCTTTTTCTTTCACTTTTTTTTTCCTCTTCTGTAGCCTTCCTTGGGATGTGTATATACCATACGGAGTATTAGGATATGATCTATAGGTGGTACATGGTAGTAGTATAGAAGAATGTACAAATTTCAAACATTTTGAATTCTGATACCTACT]
[+] EMBL OSR26671A            [            ATCACCCCGCGATCCATTTGCCCAATCAGATCAAGGCGTGTAGATTTGATTTTGGTTTTATTACTCGCAACCTGCACGTTGCCCTCAGTCACCTGGCGGCGGAGAGAGAGATCGGAGATGAGCTCGGTGTGCGCGAGGCCCGTCGGCGTGGGGTACCTTGTCGGCGGGGCGGCGAGC AGCTGGTC CCAGcg                                                                                                                                                                                                                                                                                    ]




>consensus_6383#1
GAACAAACAGCTATCACCCCGCGATCCATTTGCCCAATCAGATCAAGGCGTGTAGATTTG
ATTTTGGTTTTATTACTCGCAACCTGCACGTTGCCCTCAGTCACCTGGCGGCGGAGAGAG
AGATCGGAGATGAGCTCGGTGTGCGCGAGGCCCGTCGGCGTGGGGTACCTTGTCGGCGAG
GCGCAGCTCGCCGGGCTCCAGTGGCGGGCCGCGTCGCGGGAGACGTGGGGGAGCAGGATG
CGCCACCGTCAGCCGTCTCCGTCCTGAGCCGAGAATCGCAGAATTCGCAGTGGCTTTTTT
TGAATTTTGAATTTGTGTTGAGTTTTCTCTTTTTCTTTCACTTTTTTTTTCCTCTTCTGT
AGCCTTCCTTGGGATGTGTATATACCATACGGAGTATTAGGATATGATCTATAGGTGGTA
CATGGTAGTAGTATAGAAGAATGTACAAATTTCAAACATTTTGAATTCTGATACCTACT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6383#0      GTCGTGGAGAGACCCGGTCCCNAGAGATCAGCGGCGTACAGGCGCGCGGCCGCGGTGGCA 60
consensus_6383#1      ------------------------GAACAAACAGC-TATCACCCCGCGATCCATTTGCCC 35
                                                *  * * ** **    * ****  *    ** * 

consensus_6383#0      CCCGACGCGTGCCCGGGGGGACCGAGCGCTTCATCTTGCGCGCGAGGCGTACGAGGTGCT 120
consensus_6383#1      AATCAGATCAAGGCGTGTAGATTTGATTTTGGTTTTATTACTCGCAACCTGCACGTTGCC 95
                          *        ** *  **        *   * *    * **   * * *  * *** 

consensus_6383#0      CTCCGACCCGGAGCGGAGGCGCGGCTACTGACATCCACGCTCCGCTGCTCGGCGCCGGTC 180
consensus_6383#1      CTCAGTCACCTGGCGGCGGAGAGA-----GAGATCGGAGATGAGCT------CGGTGTGC 144
                      *** * * *   **** ** * *      ** ***   * *  ***      **  *  *

consensus_6383#0      CCGGGGCCCACGGCGGCCGGCGGCCGGGTTCCCGACTGGGAGGCNCNGCTCCCCGGGCTC 240
consensus_6383#1      GCGAGGCCC------GTCGGCGTGGGGTACCTTGTCGGCGAGGCGCAGCTCGCCGGGCTC 198
                       ** *****      * *****   **   *  * * * ***** * **** ********

consensus_6383#0      CCGTGGCGGGCCGCGTCGCCGGGAGACNTGGGGGA-CAGGATGCGCCCCCGTCA-CCGTC 298
consensus_6383#1      CAGTGGCGGGCCGCGTCGC-GGGAGACGTGGGGGAGCAGGATGCGCCACCGTCAGCCGTC 257
                      * ***************** ******* ******* *********** ****** *****

consensus_6383#0      TCCGTCCTGAGCCGAGAATC-CAGAATTCNCCGTGGCTTTTTT-GAATTTTGAATTTTTG 356
consensus_6383#1      TCCGTCCTGAGCCGAGAATCGCAGAATTCGCAGTGGCTTTTTTTGAATTTTGAATTTGTG 317
                      ******************** ******** * *********** ************* **

consensus_6383#0      TTGAGTTTTCTCTTTTTCTTTCACTTTTTTTT-CCTCTTCTGTAGCCTTCCTTGGGATGT 415
consensus_6383#1      TTGAGTTTTCTCTTTTTCTTTCACTTTTTTTTTCCTCTTCTGTAGCCTTCCTTGGGATGT 377
                      ******************************** ***************************

consensus_6383#0      GTATATACCATACGGAGTATTAGGATATGATCTATAGGTGGTACCTGGTAGTAGTATAGA 475
consensus_6383#1      GTATATACCATACGGAGTATTAGGATATGATCTATAGGTGGTACATGGTAGTAG------ 431
                      ******************************************** *********      

consensus_6383#0      TTATAGAAGAATGTACCAATTTCAAACCTTTTGAATTCTGATACCTACTTTTTGGGAGGA 535
consensus_6383#1      -TATAGAAGAATGTACAAATTTCAAACATTTTGAATTCTGATACCTACT----------- 479
                       *************** ********** *********************           

consensus_6383#0      AAAAAAAAA 544
consensus_6383#1      ---------