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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6385#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1061 fasta sequence
[CATAGCCAACCTTTTCCTTGCCACTCTTGCACACTCCACCTCCTATTCCCTTCCTCTCTTCTTGTTGCCTTCTTGGAGGAAGAAGGCCGACATGGCGCTCTGCCTCATGCTGCTCGCCAGCGGCGGCCACGGCGAGCGCGCGCCGGACGCCGAGGCGGTGGCGGCGAAGGAGGCCAAGTTCCGGAGCCGGCGGCCGGCGGACGGCGCCGGCGCCGGGGAGTTCGTGTACGAGTGCAAGACGTGCAGCAAGTGCTTCCCGTCGTTCCAGGCGCTCGGCGGCCACCGCACCAGCCACAAGAAGCCTCGCCTGGTCGCGCCGCCGGCGGCCATGGAACCGGCAGCCGATGACAAGATCAAGCCGACCATCCCGGAGACAGCCGCCGCCGCCGCCGAGGAGAAGCCGCCCAAGCCATCGCCGCCACGACCACCGGCCTCGAGGCCGATCGCCACCGATCCAACAGTGCTCGCGATCCCGGTGATCCCGAAGCAAGAAGTGCTCGACGCCACCAACTCCGCCGCCATTGCCAGCGTCTCCAAGCAGCCACGTGTCCACGAGTGCTCCATCTGCGGCGCCGAGTTCGCCTCCGGCCAGGCGCTCGGCGGCCACATGCGGCGGCACCGCCCGCTCATACCGGCGTCGGCGTCGTCCGCGGTGGTGTCCGTGCTCGACGCCGTCGACGCGCCGAGGCAGAAGGAGAAGAGCCTCCTCGAGCTGGATCTCAACATGCCGGCGCCCTGCGACGACGCGACCGCCGAGACGACGACGACGTCGTCCGCCGCCACCTCGCCGGCGTTCGCCTTCGCCGTCAGCGACAGGTCGCCGCTGCTGGTGCCGGCGGCGCTGGTCGGCTGCCATTACTAGCAGCACAAGCGACAGAGAGTAATTAAACACAAAATTCAATTCAAATTAGATATAATTCTCTGTTATTTCTCATTGCTTACACACTTCACACACACACACACACATACATACTCTCTCTTGTGATCTAAATATTTTTCTTCTTTTTCTTCTTCTTCTTCTTTTGCCATTCTAATTCCATTTGAATTTGTTCAAAAGATTG]
[+] EMBL AK108645 [CATAGCCAACCTTTTCCTTGCCACTCTTGCACACTCCACCTCCTATTCCCTTCCTCTCTTCTTGTTGCCTTCTTGGAGGAAGAAGGCCGACATGGCGCTCTGCCTCATGCTGCTCGCCAGCGGCGGCCACGGCGAGCGCGCGCCGGACGCCGAGGCGGTGGCGGCGAAGGAGGCCAAGTTCCGGAGCCGGCGGCCGGCGGACGGCGCCGGCGCCGGGGAGTTCGTGTACGAGTGCAAGACGTGCAGCAAGTGCTTCCCGTCGTTCCAGGCGCTCGGCGGCCACCGCACCAGCCACAAGAAGCCTCGCCTGGTCGCGCCGCCGGCGGCCATGGAACCGGCAGCCGATGACAAGATCAAGCCGACCATCCCGGAGACAGCCGCCGCCGCCGCCGAGGAGAAGCCGCCCAAGCCATCGCCGCCACGACCACCGGCCTCGAGGCCGATCGCCACCGATCCAACAGTGCTCGCGATCCCGGTGATCCCGAAGCAAGAAGTGCTCGACGCCACCAACTCCGCCGCCATTGCCAGCGTCTCCAAGCAGCCACGTGTCCACGAGTGCTCCATCTGCGGCGCCGAGTTCGCCTCCGGCCAGGCGCTCGGCGGCCACATGCGGCGGCACCGCCCGCTCATACCGGCGTCGGCGTCGTCCGCGGTGGTGTCCGTGCTCGACGCCGTCGACGCGCCGAGGCAGAAGGAGAAGAGCCTCCTCGAGCTGGATCTCAACATGCCGGCGCCCTGCGACGACGCGACCGCCGAGACGACGACGACGTCGTCCGCCGCCACCTCGCCGGCGTTCGCCTTCGCCGTCAGCGACAGGTCGCCGCTGCTGGTGCCGGCGGCGCTGGTCGGCTGCCATTACTAGCAGCACAAGCGACAGAGAGTAATTAAACACAAAATTCAATTCAAATTAGATATAATTCTCTGTTATTTCTCATTGCTTACACACTTCACACACACACACACACATACATACTCTCTCTTGTGATCTAAATATTTTTCTTCTTTTTCTTCTTCTTCTTCTTTTGCCATTCTAATTCCATTTGAATTTGTTCAAAAGATTG]
consensusID : consensus_6385#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 913 fasta sequence
[CGCTTTCAGCCTTCCAAGCTCTACGGCTCATTATTTTTCCATCTCCCTCCTTAATTTAGCCAAGCTCTACACTGCTCGATCAATGGCTTACGGGAAGAGGCCTCGGCAGCAAGCCGAGGAGGCGGCGTTCAGCCTGTTCGACAGCAGCGACATGGCGCGCATCATGCTGCTCTTCTCCGGCGCCCACGGCGGCGGCGGTGGCGCGGCGGCGGCGTCGCCGCCGGAGCGGATGTTCGAGTGCAAGACATGCAACCGGCAGTTCCCGTCCTTCCAGGCGCTCGGCGGCCACCGGGCCAGCCACAAGAAGCCCCGCCTGGCGGACGGCGACCCGGCCGCCGAGGCGCCGGCCAAGCCCAAGGTGCACGGGTGCTCCATCTGCGGGCTCGAGTTCGCCGTCGGCCAGGCGCTCGGAGGGCACATGCGGCGCCACCGCGCCGTCATGGCGGACGGCCTCGGGCTTGGCCTCAGCCTCGGCCTCGGCATCGGCGTCGTCGGGCAGAGCGACGACGACGGCGGCAAGAAGAAGGCCGCGGCCGCCGCCGCCGCCGCCGAGCTGGTGTTCGACCTGAACGCGCCGGCGATAGAGGAGGAGCCGGATCGCGCCAGGCCGGCGGGGCTCGCCGTAGAGTTCCCCGTGGTGGTTGACTTCCCGTGCTGACATTGACACAGAGATTTACTTCTCCATACAAGTTTTGAAAATTAATTTACAGTTTACATTTATACGCTACCCGAGAAGTCAACCCTGGAGACATTAGCTAGAGAGATTCCGTCATACATATTTTTTCCCTGGAAATGTATTCGGATGATTATAATGTTTTCAGGGCCTATATATTGTATTGGTTGACTTATCGTGGTACTTATAGTCGGTTGTCCTTTTCCCTTTCGGTGCTACATATTTTATTCTACCTGTAGT]
[+] EMBL AK111338 [CGCTTTCAGCCTTCCAAGCTCTACGGCTCATTATTTTTCCATCTCCCTCCTTAATTTAGCCAAGCTCTACACTGCTCGATCAATGGCTTACGGGAAGAGGCCTCGGCAGCAAGCCGAGGAGGCGGCGTTCAGCCTGTTCGACAGCAGCGACATGGCGCGCATCATGCTGCTCTTCTCCGGCGCCCACGGCGGCGGCGGTGGCGCGGCGGCGGCGTCGCCGCCGGAGCGGATGTTCGAGTGCAAGACATGCAACCGGCAGTTCCCGTCCTTCCAGGCGCTCGGCGGCCACCGGGCCAGCCACAAGAAGCCCCGCCTGGCGGACGGCGACCCGGCCGCCGAGGCGCCGGCCAAGCCCAAGGTGCACGGGTGCTCCATCTGCGGGCTCGAGTTCGCCGTCGGCCAGGCGCTCGGAGGGCACATGCGGCGCCACCGCGCCGTCATGGCGGACGGCCTCGGGCTTGGCCTCAGCCTCGGCCTCGGCATCGGCGTCGTCGGGCAGAGCGACGACGACGGCGGCAAGAAGAAGGCCGCGGCCGCCGCCGCCGCCGCCGAGCTGGTGTTCGACCTGAACGCGCCGGCGATAGAGGAGGAGCCGGATCGCGCCAGGCCGGCGGGGCTCGCCGTAGAGTTCCCCGTGGTGGTTGACTTCCCGTGCTGACATTGACACAGAGATTTACTTCTCCATACAAGTTTTGAAAATTAATTTACAGTTTACATTTATACGCTACCCGAGAAGTCAACCCTGGAGACATTAGCTAGAGAGATTCCGTCATACATATTTTTTCCCTGGAAATGTATTCGGATGATTATAATGTTTTCAGGGCCTATATATTGTATTGGTTGACTTATCGTGGTACTTATAGTCGGTTGTCCTTTTCCCTTTCGGTGCTACATATTTTATTCTACCTGTAGT]
consensusID : consensus_6385#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 865 fasta sequence
[TCATACATCTCAAGCTTGCTTCAGATTTCGATCAGCTTCAGTCTTCAGACAACAGAGAGGTTGGTTCACAAAGTTTCTGTAAGTAAAGCATTCATTCAGATCATGAAGAGGTTTGCATTCGAGGACAGCGATATGGCGCGCGTGCTGATGCTCATGTCGTCGCACGGGCAGCAGGAGCAGGCGCTGGCTCTGCCGGTGCCGGTGCAGCTGCCGCTCGCCGCCGCGCGCGGCGACCGCGCCCCGGAGCGCGCGTTCGTCTGCAAGACGTGCAACCGCGTGTTCCCGTCGTTCCAGGCGCTCGGCGGCCACCGTGCCAGCCACAAGAAGCCGAGGCTCGACGGCGACGGCGACCTCTCCCTGTCCAAGCCCAAGCTCCACGGCTGCTCCATCTGCGGCCTCGAGTTCGCCATTGGCCAGGCTCTCGGCGGCCACATGAGGCGCCACCGCGCCATGACCGGCGGCATGCCGCGGGCGATCGTCGTCGACAAGAAGCCCGACGTCGTCGACGTCCACGTCCACGGCCACGACGACGACGGCGGCATCAAGCGCGGCGGCCTGTGGCTCGACCTGAACCATCCACCCTGCGACGACGCCGGCGACGACGACGCCGAGTGCGGCCACAATGCCGCCGGCGCCGGCATCACGTTCCACCAGTTCTTGGATACCGGAGCCATGGCCGTTGACTGCGTCGGCTACTAGCTCTCTTTGCCGGATTTTTGCCGGATACTACAATACTTATATGCACCGATTAATCTTGGTGCAATTTCTCTTTTACCTTTTCTTTTTCTTTTCATTTCTTCTTCTTCTTGTTGAGAAATCCACATTTTGTAGCGGTAGAATATATTAGTTCCTAATACAACAGAGC]
[+] EMBL AK108981 [TCATACATCTCAAGCTTGCTTCAGATTTCGATCAGCTTCAGTCTTCAGACAACAGAGAGGTTGGTTCACAAAGTTTCTGTAAGTAAAGCATTCATTCAGATCATGAAGAGGTTTGCATTCGAGGACAGCGATATGGCGCGCGTGCTGATGCTCATGTCGTCGCACGGGCAGCAGGAGCAGGCGCTGGCTCTGCCGGTGCCGGTGCAGCTGCCGCTCGCCGCCGCGCGCGGCGACCGCGCCCCGGAGCGCGCGTTCGTCTGCAAGACGTGCAACCGCGTGTTCCCGTCGTTCCAGGCGCTCGGCGGCCACCGTGCCAGCCACAAGAAGCCGAGGCTCGACGGCGACGGCGACCTCTCCCTGTCCAAGCCCAAGCTCCACGGCTGCTCCATCTGCGGCCTCGAGTTCGCCATTGGCCAGGCTCTCGGCGGCCACATGAGGCGCCACCGCGCCATGACCGGCGGCATGCCGCGGGCGATCGTCGTCGACAAGAAGCCCGACGTCGTCGACGTCCACGTCCACGGCCACGACGACGACGGCGGCATCAAGCGCGGCGGCCTGTGGCTCGACCTGAACCATCCACCCTGCGACGACGCCGGCGACGACGACGCCGAGTGCGGCCACAATGCCGCCGGCGCCGGCATCACGTTCCACCAGTTCTTGGATACCGGAGCCATGGCCGTTGACTGCGTCGGCTACTAGCTCTCTTTGCCGGATTTTTGCCGGATACTACAATACTTATATGCACCGATTAATCTTGGTGCAATTTCTCTTTTACCTTTTCTTTTTCTTTTCATTTCTTCTTCTTCTTGTTGAGAAATCCACATTTTGTAGCGGTAGAATATATTAGTTCCTAATACAACAGAGC]
[+] EMBL AY305865 [ CAGATCATGAAGAGGTTTGCATTCGAGGACAGCGATATGGCGCGCGTGCTGATGCTCATGTCGTCGCACGGGCAGCAGGAGCAGGCGCTGGCTCTGCCGGTGCCGGTGCAGCTGCCGCTCGCCGCCGCGCGCGGCGACCGCGCCCCGGAGCGCGCGTTTGTCTGCAAGACGTGCAACCGCGTGTTCCCGTCGTTCCAGGCGCTCGGCGGCCACCGCGCCAGCCACAAGAAGCCGAGGCTCGACGGCGACGGCGACTTCTCCCTGTCCAAGCCCAGGCTCCACGGCTGCTCCATCTGCGGCCTCGAGTTCGCCATTGGCCAGGCTCTCGGCGGCCACATGAGGCGCCACCGCGCCATGACCGGCGGCATGCCGCGGGCGATCGTCGTCGACAAGAAGCCCGACGTCGTCGACGTCCACGTCCACGGCCACGACGACGACGGCGGCATCAAGCGCGGCGGCCTGTGGCTCGACCTGAACCATCCACCCTGCGACGACGCCGGCGACGACGACGTCGAGTGCGGCCACAATGCCGCCGGCGCCGGCATCACGTTCCACCAGTTCTTGGATACCGGAGCCATGGCCGTTGACTGCGTCGGCTACTAGCTCTC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6385#1 ------------------------------------------------------------
consensus_6385#2 ------------------------------------------------------------
consensus_6385#0 CATAGCCAACCTTTTCCTTGCCACTCTTGCACACTCCACCTCCTATTCCCTTCCTCTCTT 60
consensus_6385#1 ------------------------------------------------------------
consensus_6385#2 ------------------------------------------------------------
consensus_6385#0 CTTGTTGCCTTCTTGGAGGAAGAAGGCCGACATGGCGCTCTGCCTCATGCTGCTCGCCAG 120
consensus_6385#1 --------------------------------------------CGCTTTCAGC---CTT 13
consensus_6385#2 ---------------------------------------TCATACATCTCAAGCTTGCTT 21
consensus_6385#0 CGGCGGCCACGGCGAGCGCGCGCCGGACGCCGAGGCGGTGGCGGCGAAGGAGGCCAAGTT 180
* ** **
consensus_6385#1 CCAAGCTCTAC----GGCTCATTATTTTTCCATCTCCCTCCTTA-ATTTAGCCAAGCTCT 68
consensus_6385#2 CAGATTTCGATCA--GCTTCAGTCTTCAGACAACAGAGAGGTTG-GTTCA--CAAAGTTT 76
consensus_6385#0 CCGGAGCCGGCGGCCGGCGGACGGCGCCGGCGCCGGGGAGTTCGTGTACGAGTGCAAGAC 240
* * * * * * * *
consensus_6385#1 ACACTGCTCGATCAA----TGGCTTA---CGGGAAGAGGCCTCGGCAGCAAGCCGAGGAG 121
consensus_6385#2 CTGTAAGTAAAGCAT----TCATTCAGATCATGAAGAGGTTTGCATTCGAGGACAGCGAT 132
consensus_6385#0 GTGCAGCAAGTGCTTCCCGTCGTTCCAGGCGCTCGGCGGCCACCGCACCAGCCACAAGAA 300
* * * * * ** * **
consensus_6385#1 GCGGCGTTCAGCCTGTTCGACA-GCAGCGACATGGCGCGCATCA--TGCTGCT--CTTCT 176
consensus_6385#2 ATGGCGCGCGTGCTGATGCTCATGTCGTCGCACGGGCAGCAGGAGCAGGCGCTGGCTCTG 192
consensus_6385#0 GCCTCGCCTGGTCGCGCCGCCG-GCGGCCATGGAACCGGCAGCCGATGACAAGATCAAGC 359
** * * * * *** * *
consensus_6385#1 CCGGCGCC--CACGGCGGCGGC--GGTGGCGCG-GCGGCGGCGTCGCCGCCGGAGCGGAT 231
consensus_6385#2 CCGGTGCCGGTGCAGCTGCCGCTCGCCGCCGCGCGCGGCGACCGCGCC-CCGGAGCGCGC 251
consensus_6385#0 CGACCATCCCGGAGACAGCCGC-CGCCGCCGCC-GAGGAGAAGCCGCCCAAGCCATCGCC 417
* * * ** ** * * *** * ** * **** *
consensus_6385#1 GTT-CGAGTGCAAGACATGCAACCGGCAGTTCCCGTCCTTCCAGGCGCTCGGCGGCCACC 290
consensus_6385#2 GTT-CGTCTGCAAGACGTGCAACCGCGTGTTCCCGTCGTTCCAGGCGCTCGGCGGCCACC 310
consensus_6385#0 GCCACGACCACCGGCCTCGAGGCCGATCGCCACCGATCCAACAG-TGCTCG-CGATCCCG 475
* ** * * * * *** * *** *** ***** ** * *
consensus_6385#1 GGG--CCAGCCACAAGAAG--CCCCGCCTGGCGGACGGCGACCCGGCCGCCGAGGCGCCG 346
consensus_6385#2 GTG--CCAGCCACAAGAAG--CCGAGGCTCGACGGCGACGGC--GACCTCT----CCCTG 360
consensus_6385#0 GTGATCCCGAAGCAAGAAGTGCTCGACGCCACCAACTCCGCCGCCATTGCCAGCGTCTCC 535
* * ** * ******* * * ** * *
consensus_6385#1 GCCAAGCCCAAGGTGCACGGGTGCTCCATCTGCGGGCTCGAGTTCGCCGTCGGCCAGGCG 406
consensus_6385#2 TCCAAGCCCAAGCTCCACGGCTGCTCCATCTGCGGCCTCGAGTTCGCCATTGGCCAGGCT 420
consensus_6385#0 AAGCAGCCACGTGTCCACGAGTGCTCCATCTGCGGCGCCGAGTTCGCCTCCGGCCAGGCG 595
**** * **** ************** ********** ********
consensus_6385#1 CTCGGAGGGCACATGCGGCGCCACCGCGCCGTCAT-GGCGGACGGCCTCGGGC--TTGGC 463
consensus_6385#2 CTCGGCGGCCACATGAGGCGCCACCGCGCCATGACCGGCGGCATGCCGCGGGCGATCGTC 480
consensus_6385#0 CTCGGCGGCCACATGCGGCGGCACCGCCCGCTCAT-----ACCGGCGTCGGCG--TCGTC 648
***** ** ****** **** ****** * * * ** *** * * *
consensus_6385#1 CTCAGCCTCGGCCTCGGCATCGGCGTCGTC---GGGCAGAGCGACGACGACGGCGGCAAG 520
consensus_6385#2 GTCGACAAGAAGCCCGACGTCGTCGACGTCCACGTCCACGGCCACGACGACGACGGCGGC 540
consensus_6385#0 CGCGGT--GGTGTCCGTGCTCGACGCCGTCGACGCGCCGAGGCAGAAGGAGAAGAGCCTC 706
* ** *** ** **** * * * * * ** **
consensus_6385#1 AAGAAGGCCGCGGCCGCCGCCGCCGCCGCCGAGCTGGTGTTCGACCTGAACGCGCCGGCG 580
consensus_6385#2 ATCAAG--CGCGGCGGCCTGTGGCTCGACCTGAACCATCCACCCTGCGACGACGCCGGCG 598
consensus_6385#0 CTCGAG------CTGGATCTCAACATGCCGGCGCCCTGCGACGACGCGACCGCCGAGACG 760
** * * * * ** * * **
consensus_6385#1 ATAGAGGAGGAGCCGGATCGCGCCAGGCCGGCGGGGCTCGCCGTAGAGTTCCCCG-TGGT 639
consensus_6385#2 ACGACGACGCCGAGTGCGGCCACAATGCCGCCGGCGC-CGGCATCACGTTCCAC--CAGT 655
consensus_6385#0 ACGACGACGTCGTCCGCCGCCACC---TCGCCGGCGTTCGCCTTCGCCGTCAGCGACAGG 817
* * * * * * * ** *** * ** * * ** * *
consensus_6385#1 GGTTGACTTCCCGTGCT---GACATTGA-CACAGAGATTTACT---TCTCCATACAA--- 689
consensus_6385#2 TCTTGGATACCGGAGCCATGGCCGTTGA-CTGCGTCGGCTACTAGCTCTCTTTGCCG--- 711
consensus_6385#0 TCGCCGCTGCTGGTGCCGGCGGCGCTGGTCGGCTGCCATTACTAGCAGCACAAGCGACAG 877
* * * ** * * ** * **** *
consensus_6385#1 ---GTTTTGAAAATTAATTTACAGTTTACATTT-ATACGCTACCCGAGAAGTCAACCCTG 745
consensus_6385#2 ---GATTTTTGCCGGATACTACAAT----ACTT-ATATGC-ACC-----GATTAATCTTG 757
consensus_6385#0 AGAGTAATTAAACACAAAATTCAATTCAAATTAGATATAATTCTCTGTTATTTCTCATTG 937
* * * * ** * * * *** * * **
consensus_6385#1 GAGACATTAGCTAGAGAGATTCCGTCATACATATTTTTTCCCTGGAAATGTATTCGGATG 805
consensus_6385#2 GTGCAATT------------TCTCTTTTACCTTTTCTTTTTCTTTTCATTTCTTC----- 800
consensus_6385#0 CTTACACACTTCACACACACACACACACATACATACTCTCTCTTGTGATCTAAATA---T 994
* * * * * * ** ** *
consensus_6385#1 ATTATAATGTTTTCAGGGCCTATATATTGTATTGGTTGACTTATCGTGGTACTTATAGTC 865
consensus_6385#2 -TTCTTCTTGTTGAGAAATCCACATTTTGTAGCGGTAGAAT-ATATTAGTTCCTA-ATAC 857
consensus_6385#0 TTTTCTTCTTTTTCTTCTTCTTCTTCTTTTGCCATTCTAATTCCATTTGAATTTG--TTC 1052
** ** * * ** * * * * * * * *
consensus_6385#1 GGTTGTCCTTTTCCCTTTCGGTGCTACATATTTTATTCTACCTGTAGT 913
consensus_6385#2 AACAGAGC---------------------------------------- 865
consensus_6385#0 AAAAGATTG--------------------------------------- 1061
*
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||