|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6391#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 844 fasta sequence
[GCTTCCATCTGGTGTGCTTATTATAGGATCTCACACTCAAATGGACAGCCGCAAAGAGAAGGCCCACCCAGGTGGATTTCTTTTTACAAAGTTTGCTAGTAGCAGCCAGACGCTATTTGACCTTTTCCCGGATAGTTTTGGTAGTCGGTTGCATGAAAGGAACAAAGAAAGTCCGAAGGCAATGAAACATCTAAATAAACTTTTCCCTAACAAAATTTCGATCCAACTTCCACAGGATGAAACATTACTCACAGATTGGAAGCAACAACTGGATCGTGACGTTGAAACCCTTAAAGCTAAATCCAATGTT-GGTAGCATT-CGCACGTTTCT-GAGCCGCAAT-GGAATTGAAT-GCAGTGACCTT-GAAGAATTATT-CATCAAAGATCAATCACTGACCAACGAAAATGTGGACAAGATAGTTGGCTATGCTGTTAGTTATCACCTTAAGCACAATAAAGTCGAGATCTCCAAGGATGGTAAACTTGTATTGGCGAGCGAAAGCCTTAAGCATGGGCTCAACATGCTGCAGAATATGCAAAGTGATAACAAGAGCTCAAAAAAATCACTGAAGGATGTTGTCACAGAGAACGAATTTGAGAAAAGGCTTCTGGCAGATGTTATACCACCTAATGACATTGGAGTCACCTTTGATGATATTGGAGCCTTGGAAAATGTAAAAGACACATTGAAGGAGCTGGTGATGCTTCCTCTGCAAAGGCCTGAATTGTTCTGCAAAGGACAGCTAACGAAGCCTTGCAAGGGAATATTGCTGTTTGGACCTCCTGGTACTGGGAAAACCATGCTTGCTAAGGCAGTAGCAACTGAAGCAGGTGCTAACTTCATTAAC]
[+] EMBL CB619553 [GCTTCCATCTGGTGTGCTTATTATAGGATCTCACACTCAAATGGACAGCCGCAAAGAGAAGGCCCACCCAGGTGGATTTCTTTTTACAAAGTTTGCTAGTAGCAGCCAGACGCTATTTGACCTTTTCCCGGATAGTTTTGGTAGTCGGTTGCATGAAAGGAACAAAGAAAGTCCGAAGGCAATGAAACATCTAAATAAACTTTTCCCTAACAAAATTTCGATCCAACTTCCACAGGATGAAACATTACTCACAGATTGGAAGCAACAACTGGATCGTGACGTTGAAACCCTTAAAGCTAAATCCAATGTT GGTAGCATT CGCACGTTTCT GAGCCGCAAT GGAATTGAAT GCAGTGACCTT GAAGAATTATT CATCAAAGATCAATCACTGACCAACGAAAATGTGGACAAGATAGTTGGCTATGCTGTTAGTTATCACCTTAAGCACAATAAAGTCGAGATCTCCAAGGATGGTAAACTTGTATTGGCGAGCGAAAGCCTTAAGCATGGGCTCAACATGCTGCAGAATATGCAAAGTGATAACAAGAGCTCAAAAAAATCACTGAAGGATGTTGTCACAGAGAACGAATTTGAGAAAAGGCTTCTGGCAGATGTTATACCACCTAATGACATTGGAGTCACCTTTGATGATATTGGAGCCTTGGAAAATGTAAAAGACACATTGAAGGAGCTGGTGATGCTTCCTCTGCAAAGGCCTGAATTGTTCTGCAAAGGACAGCTAACGAAGCCTTGCAAGGGAATATTGCTGTTTGGACCTCCTGGTACTGGGAAAACCATGCTTGCTAAGGCAGTAGCAACTGAAGCAGGTGCTAACTTCATTAAC]
[+] EMBL C73103 [ ACAGCCGCAAAGAGAAGGCCCACCCAGGTGGATTTCTTTTTACAAAGTTTGCTAGTAGCAGCCAGACGCTATTTGACCTTTTCCCGGATAGTTTTGGTAGTCGGTTGCATGAAAGGAACAAAGAAAGTCCGAAGGCAATGAAACATCTAAATAAACTTTTCCCTAACAAAATTTCGATCCAACTTCCACAGGATGAAACATTACTCACAGATTGGAAGCAACAACTGGATCGTGACGTTGAAACCCTTAAAGCTAAATCCAATGTTGGGTAGCATTCCGCACGTTTCTGGAGCCGCAATGGGAATTGAATGGCAGTGACCTTGGAAG ATTATTCCATC AAGATCAATCACTGGGCCACG GAATGTGGGCAAGATAGTTGGC ATGCNGGTAGTTATC CCCTAAGC ]
[+] EMBL OSS4571A [ TTGGCTATGCTGTTAGTTATCACCTTAAGCACAATAAAGTCGAGATCTCCAAGGATGGTAAACTTGTATTGGCGAGCGAAA NCTTAAGCATGGGCTCAACATGCTGCAGAATATGCAAAGTGATAACAAGAGCTCAAAAAAATCACTGAAGGATGTTGTCACAGAGAACGAATTTGAGAAAAGGCTTCTGGCAGATGTTATACCACCTAATGACATTGGAGTCACCTTTGATGATATTGGAGCCTTGGAAAATGTAAAAGACACATTGAAGGAGCTGGTGATGCTTCCTCTGCAAAGGCCTGAATTGTTCTGCAAAGGACAGCTAACGAGGCCTTGCAAGGGGAT ]
consensusID : consensus_6391#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 788 fasta sequence
[AATCCTTATCATTNATCGCTTGTTANGTNCNCTAAAAANTGATCCTGATGTGTGCTATGGTGTCTGTGTAGGCCCNCCCAGNTGATTTCTTTTACAAAGTTTGCTAGTAGCAGCCAGACGCTATTTGACCTTTTCCCGGTANCANTTTTCATTCTTATTGGTCACAATGTTCTTTCTATCAGTGCTTATAAATGCACTATATGAACCCATGGTTCTGATATAACTATCTGATGCATTGTTATATCTAAAATGCAGGATAGTTTTGGTAGTCGGGTTGCATGAAAGGAACAAAGAAAGTCCGAAGGCAATGAAACATCTAAATAAACTTTTCCCTAACAAAATTTCGATCCAACTTCCACAGGTGCTAATATCCCTTGTTATCTTGTTCAAGTATTATGCTCAAGTATATTATCTAATCCAAGCAACTGAATTTGCAGGATGAAACATTACTCACAGATTGGAAGCAACAACTGGATCGTGACGTTGAAACCCTTAAAGCTAAATCCAATGTTGGTAGCATTCGCACGGTAAGCTGTGCAGATAACACAATTTCACATATCATGCTTGGCACTTTGGGTTTTGAACCATGTATTCTGTATATTCCTCTTGAAACTGAAATTTCTTGTGTGCGATGCCTAGCCTAGACAGCTAGACCCTAAGCAGTGTTTTGTTTTAAACGACACTTTGCTCTTTTCCCCTCAAATGATCAATCATGCATGCATAAAGGTGTGCGATGCCTAGACAGCTAGACCCTAAGCAGTGTTTTGTTTTAAACGACACTTTGCTCT]
[-] EMBL CB097072 [AATCCTTATCATTNATCGCTTGTTANGTNCNCTAAAAANTGATCCTGATGTGTGCTATGGTGTCTGTGTAGGCCCNCCCAGNTGATTTCTTTTACAAAGTTTGCTAGTAGCAGCCAGACGCTATTTGACCTTTTCCCGGTANCANTTTTCATTCTTATTGGTCACAATGTTCTTTCTATCAGTGCTTATAAATGCACTATATGAACCCATGGTTCTGATATAACTATCTGATGCATTGTTATATCTAAAATGCAGGATAGTTTTGGTAGTCGGGTTGCATGAAAGGAACAAAGAAAGTCCGAAGGCAATGAAACATCTAAATAAACTTTTCCCTAACAAAATTTCGATCCAACTTCCACAGGTGCTAATATCCCTTGTTATCTTGTTCAAGTATTATGCTCAAGTATATTATCTAATCCAAGCAACTGAATTTGCAGGATGAAACATTACTCACAGATTGGAAGCAACAACTGGATCGTGACGTTGAAACCCTTAAAGCTAAATCCAATGTTGGTAGCATTCGCACGGTAAGCTGTGCAGATAACACAATTTCACATATCATGCTTGGCACTTTGGGTTTTGAACCATGTATTCTGTATATTCCTCTTGAAACTGAAATTTCTTGTGTGCGATGCCTAGCCTAGACAGCTAGACCCTAAGCAGTGTTTTGTTTTAAACGACACTTTGCTCTTTTCCCCTCAAATGATCAATCATGCATGCATAAAGGTGTGCGATGCCTAGACAGCTAGACCCTAAGCAGTGTTTTGTTTTAAACGACACTTTGCTCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6391#0 --------GCTTCCATCTGGTGT-GCTTATTATAGGATCTCACACTCAAATGGACAGCCG 51
consensus_6391#1 AATCCTTATCATTNATCGCTTGTTANGTNCNCTAAAAANTGATCCTGATGTGTGCTATGG 60
* * *** *** * ** * * * ** * ** * *
consensus_6391#0 CAAA-GAGAAGGCCCACCCAGGTGGATTTCTTTTTACAAAGTTTGCTAGTAGCAGCCAGA 110
consensus_6391#1 TGTCTGTGTAGGCCCNCCCAGNTGA--TTTCTTTTACAAAGTTTGCTAGTAGCAGCCAGA 118
* * ****** ***** ** ** *****************************
consensus_6391#0 CGCTATTTGACCTTTTCCCGGATAGTTTTGGTAGTCGGTTGCATGAAAGGAACAAAGAAA 170
consensus_6391#1 CGCTATTTGACCTTTTCCCGG----TANCANTTTTCATTCTTATTG--GTCACAATGTTC 172
********************* * * ** * ** * **** *
consensus_6391#0 GTCCGAAGGCAATGAAACATCTAAATAAACTTTTCCCTAACAAAATTTCGATCCAACTTC 230
consensus_6391#1 TTTCTAT--CAGTG---CTTATAAATGCACTATATGAACCCATGGTTCTGATATAACTAT 227
* * * ** ** * * ***** *** * ** ** *** ****
consensus_6391#0 CACAGGATGAAACATTACTCACAGATTGGAAGCAACAACTGG--ATCGTGACGT-TGAAA 287
consensus_6391#1 CT---GATGCATTGTTATATCTAAAATGCAGGATAGTTTTGGTAGTCGGGTTGCATGAAA 284
* **** * *** * * ** * * * *** *** * * *****
consensus_6391#0 CCCTTAAAGCTAAATCCAATGTTGGT--AGCATTCGCACGTTTCTGAGCCGCAATGGAAT 345
consensus_6391#1 GGAACAAAGA-AAGTCCGAAGGCAATGAAACATCTAAATAAACTTTTCCCTAACAAAATT 343
**** ** *** * * * * *** * * ** * * *
consensus_6391#0 TGAATGCAGTGACCTTGAAGAATTATTCATCAAAGATCAATCACTGACCAACGAAAATGT 405
consensus_6391#1 TCGATCCAACTTCCACAGGTGCTAAT--ATCCCTTGTTATC--TTGTTCAA--GTATTAT 397
* ** ** ** * ** *** * * ** *** * * *
consensus_6391#0 GGACAAGATAGTTGGCTATGCTGTTAGTTATCACCTTAAGCACAATAAAGTCGAGATCTC 465
consensus_6391#1 GCTCAAGTATATTATCTAATCCA--AGCAACTGAATTT-GCAGGATGAAACATTACTCAC 454
* **** ** *** * ** * ** *** ** ** ** *
consensus_6391#0 CAA--GGATGGTAAACTTGTATTGGCGAGC-GAAAGCCTTAAGCATGGGCTCAACATGCT 522
consensus_6391#1 AGATTGGAAGCAACAACTGGATCGTGACGTTGAAACCCTTAAAGCTAAATCCAATGT-TG 513
* *** * * * ** ** * * **** ****** * *** *
consensus_6391#0 GCAGAATATGCAAAGTGATAACAAGAGCTCAAAAAAATCACTGAAGGATG-TTGTCACAG 581
consensus_6391#1 GTAGCATTCGCACGGTAAGCTGTGCAGATAACACAATTTCACATATCATGCTTGGCACTT 573
* ** ** *** ** * ** * * * ** * * *** *** ***
consensus_6391#0 AGAACGAATTTGAGAAAAGGCTTCTGGCAGATGTTATACCACCTAATGACATTGGAGTCA 641
consensus_6391#1 TGGGT---TTTGAACCATGTATTCTG--------TATATT-CCTCTTGAAACTGAAATTT 621
* ***** * * ***** **** *** *** * ** * *
consensus_6391#0 CCTTTG-ATGATATTGGAGCCTTGGAAAATGTAAAAGACACATTGAAGGAGCTGGTGATG 700
consensus_6391#1 CTTGTGTGCGATGCCT-AGCCTAGACAGCT-------AGACCCTAAG-----CAGTGTTT 668
* * ** *** ***** * * * * ** * * *** *
consensus_6391#0 CTTCCTCTGCAAAGGCCTGAATTGTTCTGCAAAGGACAGCTAACGAAGCCT-TGCAAGGG 759
consensus_6391#1 TGTTTTAAACGACACTTTGCTCTTTTCCCCTCAA-ATGATCAATCATGCATGCATAAAGG 727
* * * * ** * *** * * * ** * ** * ** **
consensus_6391#0 AATATTGCTGTTTGGACCTCCTGGTACTGGGAAA-ACCATGCTTGCTAAGGCAGTAGCAA 818
consensus_6391#1 TGTGC-GATGCCTAGACAGCTAGACCCTAAGCAGTGTTTTGTTTTAAACGACACTTTGCT 786
* * ** * *** * * ** * * ** ** * * ** *
consensus_6391#0 CTGAAGCAGGTGCTAACTTCATTAAC 844
consensus_6391#1 CT------------------------ 788
**
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||