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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6400#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1126 fasta sequence
[GAAGCTGCTGATCTTGGATGCCACCTAGTTCAAGGATGGC-GCCGCCGCCGCTCGCCGGCGTGGTGGTGGTCGCCGCCGCGCTCCTGCTCCTCCTGCCGGAGGCCGCCGAGCCCCGCACTCTCCTCTCGCTCGACGACTTCGGCGCCGTCGGCGACGGCGTCGCCAACGACACGCAGGCCTTGGTGGACGCCTGGAGCGCCGCCTGCGCCACCGGCGACCACACCTTCCTCCACGTCCCCGCCGCCAAGTCCTACCTCGTCTGGCCGGTCACCCTCGCCGGACCTTGCAGGGAGGAGATCAAGCTCTTCATCTCCGGCAACATCGTCGCGCCGGAGAGCCCCGACGAGTGGCCGGAGGGCGGCGGCGGCGGCGGCGAATGGCTCCACTTCGTCGGCGTCAGCGACCTGACGCTGAGCGGC-GGGGGCGTCA-TCGACGGCCGTGGCCACCGGTGGTGGGCCCGGTCGTGCAAGGCAAAGCACAA-CGCGA-CCGAGAATTGCACTACCCAGGCTGCTCCAAAGGCGC-TGCACTTCGAGGATTGTCAGGGTATCAGCGTGATGGGGATCACGCTGCAGAACAGCCAGGAGAGCCACCTGACGTTCACCCGGTGCTCGCACGTCAAGGCCAACTACCTGAGGATAACCTCGCCGGAGGACAGCCCGGACACCACCGGAGTTCACGTCGTCAGCTCGCGCAATGTTCACATCATGGACGACTCGATCTCCACAGGTCATGATTGTGTCTCGATTGTGGGCAATTCTACGGATGTTCGTCTAAGAGCCATCTCATGTGGACCTGGCCATGGTATCAGTATTGGAGGATTAGGCGAGAACCGAAGTTACCACAGGGTAGAAAAGATCAAGATGGACACCCTGTTCATTTCCAACACTGAAAACGGCGTACGCGTCAAGACCTTCCAGGGCGGCTGCGGCACGGCCCGGAAAATGAAGTTCGGTGACATCCTTATGAAGAACGTCAAGAACCCGATCGTCATCGATCAGCAGAACTCCTCGAGCAACGAAATTCCCTGCGGATCAAAGAACGGAAGCGCGGTGACGGTGGGGGAGATCAGCTACACGGACATCACCGGCACGTCGGCGTCGGAGCGGGCGGTGACGTTCGCGTGCAG]
[+] EMBL AK102925 [GAAGCTGCTGATCTTGGATGCCACCTAGTTCAAGGATGGC GCCGCCGCCGCTCGCCGGCGTGGTGGTGGTCGCCGCCGCGCTCCTGCTCCTCCTGCCGGAGGCCGCCGAGCCCCGCACTCTCCTCTCGCTCGACGACTTCGGCGCCGTCGGCGACGGCGTCGCCAACGACACGCAGGCCTTGGTGGACGCCTGGAGCGCCGCCTGCGCCACCGGCGACCACACCTTCCTCCACGTCCCCGCCGCCAAGTCCTACCTCGTCTGGCCGGTCACCCTCGCCGGACCTTGCAGGGAGGAGATCAAGCTCTTCATCTCCGGCAACATCGTCGCGCCGGAGAGCCCCGACGAGTGGCCGGAGGGCGGCGGCGGCGGCGGCGAATGGCTCCACTTCGTCGGCGTCAGCGACCTGACGCTGAGCGGC GGGGGCGTCA TCGACGGCCGTGGCCACCGGTGGTGGGCCCGGTCGTGCAAGGCAAAGCACAA CGCGA CCGAGAATTGCACTACCCAGGCTGCTCCAAAGGCGC TGCACTTCGAGGATTGTCAGGGTATCAGCGTGATGGGGATCACGCTGCAGAACAGCCAGGAGAGCCACCTGACGTTCACCCGGTGCTCGCACGTCAAGGCCAACTACCTGAGGATAACCTCGCCGGAGGACAGCCCGGACACCACCGGAGTTCACGTCGTCAGCTCGCGCAATGTTCACATCATGGACGACTCGATCTCCACAGGTCATGATTGTGTCTCGATTGTGGGCAATTCTACGGATGTTCGTCTAAGAGCCATCTCATGTGGACCTGGCCATGGTATCAGTATTGGAGGATTAGGCGAGAACCGAAGTTACCACAGGGTAGAAAAGATCAAGATGGACACCCTGTTCATTTCCAACACTGAAAACGGCGTACGCGTCAAGACCTTCCAGGGCGGCTGCGGCACGGCCCGGAAAATGAAGTTCGGTGACATCCTTATGAAGAACGTCAAGAACCCGATCGTCATCGATCAGCAGAACTCCTCGAGCAACGAAATTCCCTGCGGATCAAAGAACGGAAGCGCGGTGACGGTGGGGGAGATCAGCTACACGGACATCACCGGCACGTCGGCGTCGGAGCGGGCGGTGACGTTCGCGTGCAG]
[+] EMBL AU182242 [ GGATGCCACCTAGTTCAAGGATGGCAGCCGCCGCCGCTCGCCGGCGTGGTGGTGGTCGCCGCCGCGCTCCTGCTCCTCCTGCCGGAGGCCGCCGAGCCCCGCACTCTCCTCTCGCTCGACGACTTCGGCGCCGTCGGCGACGGCGTCGCCAACGACACGCAGGCCTTGGTGGACGCCTGGAGCGCCGCCTGCGCCACCGGCGACCACACCTTCCTCCACGTCCCCGCCGCCAAGTCCTACCTCGTCTGGCCGGTCACCCTCGCCGGACCTTGCAGGGAGGAGATCAAGCTCTTCATCTCCGGCAACATCGTCGCGCCGGAGAGCCCCGACGAGTGGCCGGAGGGCGGCGGCGGCGGCGGCGAATGGCTCCACTTCGTCGGCGTCAGCGACCTGACGCTGAGCGGCGGGGGGCGTCA TCGACGGCCGTGGCC ]
[+] EMBL AU172617 [ ACTTCGGCGCCGTCGGCGACGGCGTCGCCAACGACACGCAGGCCTTGGTGGACGCCTGGAGCGCCGCCTGCGCCACCGGCGACCACACCTTCCTCCACGTCCCCGCCGCCAAGTCCTACCTCGTCTGGCCGGTCACCCTCGCCGGACCTTGCAGGGAGGAGATCAAGCTCTTCATCTCCGGCAACATCGTCGCGCCGGAGAGCCCCGACGAGTGGCCGGAGGGCGGCGGCGGCGGCGGCAAATGGCTCCACTTTGTCGGCGTCAGCGACCTGACGCTGAGCGGC GGGGGCGTNATTCGACGGCCGTGGCCACCGNTGGTGGGCCCGGTCGTGCAAGGCAAAGCACAACCGCGACCCGAGAATTGCACTACCCAGGCTGCTCCAAAGGCCCTTGCAATT ]
consensusID : consensus_6400#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 206 fasta sequence
[GGATGCCACCTAGTTCAAGGATGGCGCCGCCGCCGCTCGCCGGCNTGGTGGTGGTCGCCGCCGCGCTCCTGCTCCTCCTGCCGGAGCCGNCCGAGCCCCGCACTCTCCTCTCGCTCGACGACTTCGGCGCCGTCGGAAGGTGTCGCAGACNANACGCAGGCNTTGGTGGACGCNTGGAGCGCCGCCTGCGCACCGGNACCACACCT]
[+] EMBL C71764 [GGATGCCACCTAGTTCAAGGATGGCGCCGCCGCCGCTCGCCGGCNTGGTGGTGGTCGCCGCCGCGCTCCTGCTCCTCCTGCCGGAGCCGNCCGAGCCCCGCACTCTCCTCTCGCTCGACGACTTCGGCGCCGTCGGAAGGTGTCGCAGACNANACGCAGGCNTTGGTGGACGCNTGGAGCGCCGCCTGCGCACCGGNACCACACCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6400#0 GAAGCTGCTGATCTTGGATGCCACCTAGTTCAAGGATGGCGCCGCCGCCGCTCGCCGGCG 60
consensus_6400#1 ---------------GGATGCCACCTAGTTCAAGGATGGCGCCGCCGCCGCTCGCCGGCN 45
********************************************
consensus_6400#0 TGGTGGTGGTCGCCGCCGCGCTCCTGCTCCTCCTGCCGGAGGCCGCCGAGCCCCGCACTC 120
consensus_6400#1 TGGTGGTGGTCGCCGCCGCGCTCCTGCTCCTCCTGCCGGAGCCGNCCGAGCCCCGCACTC 105
***************************************** * ***************
consensus_6400#0 TCCTCTCGCTCGACGACTTCGGCGCCGTCGGCGACGGCGTCGCCAACGACACGCAGGCCT 180
consensus_6400#1 TCCTCTCGCTCGACGACTTCGGCGCCGTCG--GAAGGTGTCGCAGACNANACGCAGGCNT 163
****************************** ** ** ***** ** * ******** *
consensus_6400#0 TGGTGGACGCCTGGAGCGCCGCCTGCGCCACCGGCGACCACACCTTCCTCCACGTCCCCG 240
consensus_6400#1 TGGTGGACGCNTGGAGCGCCGCCTGCGC-ACCGGN-ACCACACCT--------------- 206
********** ***************** ***** *********
consensus_6400#0 CCGCCAAGTCCTACCTCGTCTGGCCGGTCACCCTCGCCGGACCTTGCAGGGAGGAGATCA 300
consensus_6400#1 ------------------------------------------------------------
consensus_6400#0 AGCTCTTCATCTCCGGCAACATCGTCGCGCCGGAGAGCCCCGACGAGTGGCCGGAGGGCG 360
consensus_6400#1 ------------------------------------------------------------
consensus_6400#0 GCGGCGGCGGCGGCGAATGGCTCCACTTCGTCGGCGTCAGCGACCTGACGCTGAGCGGCG 420
consensus_6400#1 ------------------------------------------------------------
consensus_6400#0 GGGGCGTCATCGACGGCCGTGGCCACCGGTGGTGGGCCCGGTCGTGCAAGGCAAAGCACA 480
consensus_6400#1 ------------------------------------------------------------
consensus_6400#0 ACGCGACCGAGAATTGCACTACCCAGGCTGCTCCAAAGGCGCTGCACTTCGAGGATTGTC 540
consensus_6400#1 ------------------------------------------------------------
consensus_6400#0 AGGGTATCAGCGTGATGGGGATCACGCTGCAGAACAGCCAGGAGAGCCACCTGACGTTCA 600
consensus_6400#1 ------------------------------------------------------------
consensus_6400#0 CCCGGTGCTCGCACGTCAAGGCCAACTACCTGAGGATAACCTCGCCGGAGGACAGCCCGG 660
consensus_6400#1 ------------------------------------------------------------
consensus_6400#0 ACACCACCGGAGTTCACGTCGTCAGCTCGCGCAATGTTCACATCATGGACGACTCGATCT 720
consensus_6400#1 ------------------------------------------------------------
consensus_6400#0 CCACAGGTCATGATTGTGTCTCGATTGTGGGCAATTCTACGGATGTTCGTCTAAGAGCCA 780
consensus_6400#1 ------------------------------------------------------------
consensus_6400#0 TCTCATGTGGACCTGGCCATGGTATCAGTATTGGAGGATTAGGCGAGAACCGAAGTTACC 840
consensus_6400#1 ------------------------------------------------------------
consensus_6400#0 ACAGGGTAGAAAAGATCAAGATGGACACCCTGTTCATTTCCAACACTGAAAACGGCGTAC 900
consensus_6400#1 ------------------------------------------------------------
consensus_6400#0 GCGTCAAGACCTTCCAGGGCGGCTGCGGCACGGCCCGGAAAATGAAGTTCGGTGACATCC 960
consensus_6400#1 ------------------------------------------------------------
consensus_6400#0 TTATGAAGAACGTCAAGAACCCGATCGTCATCGATCAGCAGAACTCCTCGAGCAACGAAA 1020
consensus_6400#1 ------------------------------------------------------------
consensus_6400#0 TTCCCTGCGGATCAAAGAACGGAAGCGCGGTGACGGTGGGGGAGATCAGCTACACGGACA 1080
consensus_6400#1 ------------------------------------------------------------
consensus_6400#0 TCACCGGCACGTCGGCGTCGGAGCGGGCGGTGACGTTCGCGTGCAG 1126
consensus_6400#1 ----------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||