These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6400#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1126 fasta sequence [GAAGCTGCTGATCTTGGATGCCACCTAGTTCAAGGATGGC-GCCGCCGCCGCTCGCCGGCGTGGTGGTGGTCGCCGCCGCGCTCCTGCTCCTCCTGCCGGAGGCCGCCGAGCCCCGCACTCTCCTCTCGCTCGACGACTTCGGCGCCGTCGGCGACGGCGTCGCCAACGACACGCAGGCCTTGGTGGACGCCTGGAGCGCCGCCTGCGCCACCGGCGACCACACCTTCCTCCACGTCCCCGCCGCCAAGTCCTACCTCGTCTGGCCGGTCACCCTCGCCGGACCTTGCAGGGAGGAGATCAAGCTCTTCATCTCCGGCAACATCGTCGCGCCGGAGAGCCCCGACGAGTGGCCGGAGGGCGGCGGCGGCGGCGGCGAATGGCTCCACTTCGTCGGCGTCAGCGACCTGACGCTGAGCGGC-GGGGGCGTCA-TCGACGGCCGTGGCCACCGGTGGTGGGCCCGGTCGTGCAAGGCAAAGCACAA-CGCGA-CCGAGAATTGCACTACCCAGGCTGCTCCAAAGGCGC-TGCACTTCGAGGATTGTCAGGGTATCAGCGTGATGGGGATCACGCTGCAGAACAGCCAGGAGAGCCACCTGACGTTCACCCGGTGCTCGCACGTCAAGGCCAACTACCTGAGGATAACCTCGCCGGAGGACAGCCCGGACACCACCGGAGTTCACGTCGTCAGCTCGCGCAATGTTCACATCATGGACGACTCGATCTCCACAGGTCATGATTGTGTCTCGATTGTGGGCAATTCTACGGATGTTCGTCTAAGAGCCATCTCATGTGGACCTGGCCATGGTATCAGTATTGGAGGATTAGGCGAGAACCGAAGTTACCACAGGGTAGAAAAGATCAAGATGGACACCCTGTTCATTTCCAACACTGAAAACGGCGTACGCGTCAAGACCTTCCAGGGCGGCTGCGGCACGGCCCGGAAAATGAAGTTCGGTGACATCCTTATGAAGAACGTCAAGAACCCGATCGTCATCGATCAGCAGAACTCCTCGAGCAACGAAATTCCCTGCGGATCAAAGAACGGAAGCGCGGTGACGGTGGGGGAGATCAGCTACACGGACATCACCGGCACGTCGGCGTCGGAGCGGGCGGTGACGTTCGCGTGCAG] [+] EMBL AK102925 [GAAGCTGCTGATCTTGGATGCCACCTAGTTCAAGGATGGC GCCGCCGCCGCTCGCCGGCGTGGTGGTGGTCGCCGCCGCGCTCCTGCTCCTCCTGCCGGAGGCCGCCGAGCCCCGCACTCTCCTCTCGCTCGACGACTTCGGCGCCGTCGGCGACGGCGTCGCCAACGACACGCAGGCCTTGGTGGACGCCTGGAGCGCCGCCTGCGCCACCGGCGACCACACCTTCCTCCACGTCCCCGCCGCCAAGTCCTACCTCGTCTGGCCGGTCACCCTCGCCGGACCTTGCAGGGAGGAGATCAAGCTCTTCATCTCCGGCAACATCGTCGCGCCGGAGAGCCCCGACGAGTGGCCGGAGGGCGGCGGCGGCGGCGGCGAATGGCTCCACTTCGTCGGCGTCAGCGACCTGACGCTGAGCGGC GGGGGCGTCA TCGACGGCCGTGGCCACCGGTGGTGGGCCCGGTCGTGCAAGGCAAAGCACAA CGCGA CCGAGAATTGCACTACCCAGGCTGCTCCAAAGGCGC TGCACTTCGAGGATTGTCAGGGTATCAGCGTGATGGGGATCACGCTGCAGAACAGCCAGGAGAGCCACCTGACGTTCACCCGGTGCTCGCACGTCAAGGCCAACTACCTGAGGATAACCTCGCCGGAGGACAGCCCGGACACCACCGGAGTTCACGTCGTCAGCTCGCGCAATGTTCACATCATGGACGACTCGATCTCCACAGGTCATGATTGTGTCTCGATTGTGGGCAATTCTACGGATGTTCGTCTAAGAGCCATCTCATGTGGACCTGGCCATGGTATCAGTATTGGAGGATTAGGCGAGAACCGAAGTTACCACAGGGTAGAAAAGATCAAGATGGACACCCTGTTCATTTCCAACACTGAAAACGGCGTACGCGTCAAGACCTTCCAGGGCGGCTGCGGCACGGCCCGGAAAATGAAGTTCGGTGACATCCTTATGAAGAACGTCAAGAACCCGATCGTCATCGATCAGCAGAACTCCTCGAGCAACGAAATTCCCTGCGGATCAAAGAACGGAAGCGCGGTGACGGTGGGGGAGATCAGCTACACGGACATCACCGGCACGTCGGCGTCGGAGCGGGCGGTGACGTTCGCGTGCAG] [+] EMBL AU182242 [ GGATGCCACCTAGTTCAAGGATGGCAGCCGCCGCCGCTCGCCGGCGTGGTGGTGGTCGCCGCCGCGCTCCTGCTCCTCCTGCCGGAGGCCGCCGAGCCCCGCACTCTCCTCTCGCTCGACGACTTCGGCGCCGTCGGCGACGGCGTCGCCAACGACACGCAGGCCTTGGTGGACGCCTGGAGCGCCGCCTGCGCCACCGGCGACCACACCTTCCTCCACGTCCCCGCCGCCAAGTCCTACCTCGTCTGGCCGGTCACCCTCGCCGGACCTTGCAGGGAGGAGATCAAGCTCTTCATCTCCGGCAACATCGTCGCGCCGGAGAGCCCCGACGAGTGGCCGGAGGGCGGCGGCGGCGGCGGCGAATGGCTCCACTTCGTCGGCGTCAGCGACCTGACGCTGAGCGGCGGGGGGCGTCA TCGACGGCCGTGGCC ] [+] EMBL AU172617 [ ACTTCGGCGCCGTCGGCGACGGCGTCGCCAACGACACGCAGGCCTTGGTGGACGCCTGGAGCGCCGCCTGCGCCACCGGCGACCACACCTTCCTCCACGTCCCCGCCGCCAAGTCCTACCTCGTCTGGCCGGTCACCCTCGCCGGACCTTGCAGGGAGGAGATCAAGCTCTTCATCTCCGGCAACATCGTCGCGCCGGAGAGCCCCGACGAGTGGCCGGAGGGCGGCGGCGGCGGCGGCAAATGGCTCCACTTTGTCGGCGTCAGCGACCTGACGCTGAGCGGC GGGGGCGTNATTCGACGGCCGTGGCCACCGNTGGTGGGCCCGGTCGTGCAAGGCAAAGCACAACCGCGACCCGAGAATTGCACTACCCAGGCTGCTCCAAAGGCCCTTGCAATT ] consensusID : consensus_6400#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 206 fasta sequence [GGATGCCACCTAGTTCAAGGATGGCGCCGCCGCCGCTCGCCGGCNTGGTGGTGGTCGCCGCCGCGCTCCTGCTCCTCCTGCCGGAGCCGNCCGAGCCCCGCACTCTCCTCTCGCTCGACGACTTCGGCGCCGTCGGAAGGTGTCGCAGACNANACGCAGGCNTTGGTGGACGCNTGGAGCGCCGCCTGCGCACCGGNACCACACCT] [+] EMBL C71764 [GGATGCCACCTAGTTCAAGGATGGCGCCGCCGCCGCTCGCCGGCNTGGTGGTGGTCGCCGCCGCGCTCCTGCTCCTCCTGCCGGAGCCGNCCGAGCCCCGCACTCTCCTCTCGCTCGACGACTTCGGCGCCGTCGGAAGGTGTCGCAGACNANACGCAGGCNTTGGTGGACGCNTGGAGCGCCGCCTGCGCACCGGNACCACACCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6400#0 GAAGCTGCTGATCTTGGATGCCACCTAGTTCAAGGATGGCGCCGCCGCCGCTCGCCGGCG 60 consensus_6400#1 ---------------GGATGCCACCTAGTTCAAGGATGGCGCCGCCGCCGCTCGCCGGCN 45 ******************************************** consensus_6400#0 TGGTGGTGGTCGCCGCCGCGCTCCTGCTCCTCCTGCCGGAGGCCGCCGAGCCCCGCACTC 120 consensus_6400#1 TGGTGGTGGTCGCCGCCGCGCTCCTGCTCCTCCTGCCGGAGCCGNCCGAGCCCCGCACTC 105 ***************************************** * *************** consensus_6400#0 TCCTCTCGCTCGACGACTTCGGCGCCGTCGGCGACGGCGTCGCCAACGACACGCAGGCCT 180 consensus_6400#1 TCCTCTCGCTCGACGACTTCGGCGCCGTCG--GAAGGTGTCGCAGACNANACGCAGGCNT 163 ****************************** ** ** ***** ** * ******** * consensus_6400#0 TGGTGGACGCCTGGAGCGCCGCCTGCGCCACCGGCGACCACACCTTCCTCCACGTCCCCG 240 consensus_6400#1 TGGTGGACGCNTGGAGCGCCGCCTGCGC-ACCGGN-ACCACACCT--------------- 206 ********** ***************** ***** ********* consensus_6400#0 CCGCCAAGTCCTACCTCGTCTGGCCGGTCACCCTCGCCGGACCTTGCAGGGAGGAGATCA 300 consensus_6400#1 ------------------------------------------------------------ consensus_6400#0 AGCTCTTCATCTCCGGCAACATCGTCGCGCCGGAGAGCCCCGACGAGTGGCCGGAGGGCG 360 consensus_6400#1 ------------------------------------------------------------ consensus_6400#0 GCGGCGGCGGCGGCGAATGGCTCCACTTCGTCGGCGTCAGCGACCTGACGCTGAGCGGCG 420 consensus_6400#1 ------------------------------------------------------------ consensus_6400#0 GGGGCGTCATCGACGGCCGTGGCCACCGGTGGTGGGCCCGGTCGTGCAAGGCAAAGCACA 480 consensus_6400#1 ------------------------------------------------------------ consensus_6400#0 ACGCGACCGAGAATTGCACTACCCAGGCTGCTCCAAAGGCGCTGCACTTCGAGGATTGTC 540 consensus_6400#1 ------------------------------------------------------------ consensus_6400#0 AGGGTATCAGCGTGATGGGGATCACGCTGCAGAACAGCCAGGAGAGCCACCTGACGTTCA 600 consensus_6400#1 ------------------------------------------------------------ consensus_6400#0 CCCGGTGCTCGCACGTCAAGGCCAACTACCTGAGGATAACCTCGCCGGAGGACAGCCCGG 660 consensus_6400#1 ------------------------------------------------------------ consensus_6400#0 ACACCACCGGAGTTCACGTCGTCAGCTCGCGCAATGTTCACATCATGGACGACTCGATCT 720 consensus_6400#1 ------------------------------------------------------------ consensus_6400#0 CCACAGGTCATGATTGTGTCTCGATTGTGGGCAATTCTACGGATGTTCGTCTAAGAGCCA 780 consensus_6400#1 ------------------------------------------------------------ consensus_6400#0 TCTCATGTGGACCTGGCCATGGTATCAGTATTGGAGGATTAGGCGAGAACCGAAGTTACC 840 consensus_6400#1 ------------------------------------------------------------ consensus_6400#0 ACAGGGTAGAAAAGATCAAGATGGACACCCTGTTCATTTCCAACACTGAAAACGGCGTAC 900 consensus_6400#1 ------------------------------------------------------------ consensus_6400#0 GCGTCAAGACCTTCCAGGGCGGCTGCGGCACGGCCCGGAAAATGAAGTTCGGTGACATCC 960 consensus_6400#1 ------------------------------------------------------------ consensus_6400#0 TTATGAAGAACGTCAAGAACCCGATCGTCATCGATCAGCAGAACTCCTCGAGCAACGAAA 1020 consensus_6400#1 ------------------------------------------------------------ consensus_6400#0 TTCCCTGCGGATCAAAGAACGGAAGCGCGGTGACGGTGGGGGAGATCAGCTACACGGACA 1080 consensus_6400#1 ------------------------------------------------------------ consensus_6400#0 TCACCGGCACGTCGGCGTCGGAGCGGGCGGTGACGTTCGCGTGCAG 1126 consensus_6400#1 ---------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||