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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6405#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1240 fasta sequence
[CTTCCCTCCTCTCTCTCTCGCACTCACCCGGCGACGCCGACGCCCCACCCGCGCGCGGTTGATCCCCCGTCCACCGCTGCTCGATTTCTCTCCTCTCCCGCGCCGCCCCTCCGCTGTCGTCGCATCCCTCACGTGCTGCCCCTCCGTCGTCGTCGGATCGTCATGCCGCCTGCCGCCGCCACTTGCTCGTGGAGATGGCGATGATCATCGAAGAACGGCGAGCAGTGAAGAGCTCGAGGGAGGGTTCAGTGATTACTACCGCGGTGCTGCCTGGCTGCTACCTCTTTCTGCCTCTTCATTCCACCGCATCCACCAGCTTCTACTTCTTCAGTCCTTGGCTGTCGGATCGGGCTACCAACCAGTCAACAACAGATCCTCCCTATACGAGATGGGTAACGTGAAGATCATTGCTGCCACATATGGGTGGAAAGGGACCATGATCGCCACAGGGATCACCGTGATAGAAGCAAAAGAAGATAGCATCGTGATTCTGAATATTCTGATGATCGCGATCGGCCTTGGG-ACGATGATTCTGAAAGATCAATAATCAATGGAATATTCTGCACTACCCTAGAGTGAAGGGTGCTGCGGAGGCTAGAGAACAACAGTATTCAGTCCTCCAAATTAGATGTTGCACCATTGTTGGTGACCGGCTGACCGACATGAATCCATCGCCACTCAGTTTTAAGTTTAACAAAGTTGCAAGGAAGTTTTCAAGATATTGGGGACTTTTATCAGTTTGCCGACTCCACACTTTTTTGGCACCCAGAAATCACTTCAGTTCCTCTCCTGCACATGAGGACTGCATGTTTGTACAATGAAAGTATTGTGGGGTTTTATCAAGATGCAACAACGGGAAGATTGAAAAGGCTGCTGCCTGTAAGATTGAGAGGGCTGCTTCTGGAGGAAAAAGCACACTACATGGGCAATGACAATGGGAGAGGGATTGAAAGGAGAAACACTCCCAAGGAGAAGGAGAAGAGCGAGGGAAAACACCAGGGTGATGTGAGCAAAATCTAATCGGGAAGCACTATATCATACTGTATGATATATTAATACACTATGATATTGGTTTCACCTCAGTGTGATATTGAAGCAACAGAGATTGTTTTATCAAGCTATCAGGTCAAAAAAAAAATGAAATCCTATTGTCAGCATTTCATAATTTTAGTACTAAATTTTTATTTTCTGAATCGATTCATGTATATGGTTTTACCAGACTGAAGCTCTTGATTTAGAG]
[+] EMBL AK102986 [CTTCCCTCCTCTCTCTCTCGCACTCACCCGGCGACGCCGACGCCCCACCCGCGCGCGGTTGATCCCCCGTCCACCGCTGCTCGATTTCTCTCCTCTCCCGCGCCGCCCCTCCGCTGTCGTCGCATCCCTCACGTGCTGCCCCTCCGTCGTCGTCGGATCGTCATGCCGCCTGCCGCCGCCACTTGCTCGTGGAGATGGCGATGATCATCGAAGAACGGCGAGCAGTGAAGAGCTCGAGGGAGGGTTCAGTGATTACTACCGCGGTGCTGCCTGGCTGCTACCTCTTTCTGCCTCTTCATTCCACCGCATCCACCAGCTTCTACTTCTTCAGTCCTTGGCTGTCGGATCGGGCTACCAACCAGTCAACAACAGATCCTCCCTATACGAGATGGGTAACGTGAAGATCATTGCTGCCACATATGGGTGGAAAGGGACCATGATCGCCACAGGGATCACCGTGATAGAAGCAAAAGAAGATAGCATCGTGATTCTGAATATTCTGATGATCGCGATCGGCCTTGGG ACGATGATTCTGAAAGATCAATAATCAATGGAATATTCTGCACTACCCTAGAGTGAAGGGTGCTGCGGAGGCTAGAGAACAACAGTATTCAGTCCTCCAAATTAGATGTTGCACCATTGTTGGTGACCGGCTGACCGACATGAATCCATCGCCACTCAGTTTTAAGTTTAACAAAGTTGCAAGGAAGTTTTCAAGATATTGGGGACTTTTATCAGTTTGCCGACTCCACACTTTTTTGGCACCCAGAAATCACTTCAGTTCCTCTCCTGCACATGAGGACTGCATGTTTGTACAATGAAAGTATTGTGGGGTTTTATCAAGATGCAACAACGGGAAGATTGAAAAGGCTGCTGCCTGTAAGATTGAGAGGGCTGCTTCTGGAGGAAAAAGCACACTACATGGGCAATGACAATGGGAGAGGGATTGAAAGGAGAAACACTCCCAAGGAGAAGGAGAAGAGCGAGGGAAAACACCAGGGTGATGTGAGCAAAATCTAATCGGGAAGCACTATATCATACTGTATGATATATTAATACACTATGATATTGGTTTCACCTCAGTGTGATATTGAAGCAACAGAGATTGTTTTATCAAGCTATCAGGTCAAAAAAAAAATGAAATCCTATTGTCAGCATTTCATAATTTTAGTACTAAATTTTTATTTTCTGAATCGATTCATGTATATGGTTTTACCAGACTGAAGCTCTTGATTTAGAG]
[-] EMBL CA761546 [ TGATACAA CCAAAGAAGATAGCGTCGGGATTCTGAATATTCTGATGATCGCGATCGGCCCTGGGCGCGATGATTCTGAAAGATCAATAATCAATGGAATATTCTGCCCTACCCTAGAGTCAAGGGTCCTGCGGAGCGTAGAGACCAACAGTATTCAGTCCTCCAAATTAGATGTTGCACCATTGTTGGTGACCGGCTGACCGACATGAATCCATCGCCACTCAGTTTTAAGTTTAACAAAGTTGCAAGGAAGTTTTCAAGATATTGGGGACTTTTATCAGTTTGCCGACTCCACACTTTTTTGGCACCCGGAAATCACTTCAGTTCCTCTCCTGCACATGAGGACTGCATGTTTGTACAATGAAAGTATTGTGGGGTTTTATCAAGATGCAACAACGGGAAGATTGAAAAGGCTGCTGCCTGTAAGATTGAGAGGGCTGCTTCTGGAGGAAAAAGCCCACTACATGGGCAATGGCAATGGGAGAGGGATTCAAAGGAGAAACACTCCCAAGGAGAAGGAGAAGAGCGAGGGAAAACCCCAGGGTGATGTGAGCAAAATCTAATCGGGAAGCACTATATCATACTGTATGATATATTAATACCCTATGATATTGGTTTCACCTCAGTGTGATATTGAAGCAACAGAGATTGTTTTATCAAGCTATCAGGTCAAAAAAAAAAa ]
consensusID : consensus_6405#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 664 fasta sequence
[TGGCAATTGTCTCCACTAAGCTATTGCAATGATATCTCTGCCAAAGTAGGTCAAGCTTTTCGGTGTAAATTCCAGTAAGAGTTCTGAATGCTGTGCCTTTTATACCTTGTGCCTTCATGCCNCTAGCGCCATGTCTCTTGTTTTTGGTTTCCCACTATCAGTCACTCCAGCTTTTGTGTTTGCTTTCTATTTTTTAATAGATGCAACACCGGGAAGATTGAAAAGGCTGCTGCCTGTAAGATTGAGAGGGCTGCTTCTGGAGGAAAAAGCACACTACATGGGCAATGACAATGGGAGAGGGATTCAAAGGAGAAACCCTCCCAAGGAGAAGGAGAAGAGCGAGGGAAAACCCCAGGGTGATGTGAGCAAAATCTAATCGGGAAGCCCTATATCATACTGTATGATATATTAATACCCTATGATATTGGTTTCACCTCAGTGTGATATTGAAGCAACAGAGATTGTTTTATCAAGCTATCAGGTCAAAAAAAAAATGAAATCCTATTGTCAGCATTTCATAATTTTAGTACTAAATTTTTATTTTCTGAATCGATTCATGTATATGGTTTTACCAGACTGAAGCTCTTGATTTAGAGAAACTTTGCTAGAATACCGTGGCCCAAGCCGCAGAGGATAGAAAAAATGATGATAAAAAAAAAAAAAA]
[-] EMBL CA761738 [TGGCAATTGTCTCCACTAAGCTATTGCAATGATATCTCTGCCAAAGTAGGTCAAGCTTTTCGGTGTAAATTCCAGTAAGAGTTCTGAATGCTGTGCCTTTTATACCTTGTGCCTTCATGCCNCTAGCGCCATGTCTCTTGTTTTTGGTTTCCCACTATCAGTCACTCCAGCTTTTGTGTTTGCTTTCTATTTTTTAATAGATGCAACACCGGGAAGATTGAAAAGGCTGCTGCCTGTAAGATTGAGAGGGCTGCTTCTGGAGGAAAAAGCACACTACATGGGCAATGACAATGGGAGAGGGATTCAAAGGAGAAACCCTCCCAAGGAGAAGGAGAAGAGCGAGGGAAAACCCCAGGGTGATGTGAGCAAAATCTAATCGGGAAGCCCTATATCATACTGTATGATATATTAATACCCTATGATATTGGTTTCACCTCAGTGTGATATTGAAGCAACAGAGATTGTTTTATCAAGCTATCAGGTCAAAAAAAAAATGAAATCCTATTGTCAGCATTTCATAATTTTAGTACTAAATTTTTATTTTCTGAATCGATTCATGTATATGGTTTTACCAGACTGAAGCTCTTGATTTAGAGAAACTTTGCTAGAATACCGTGGCCCAAGCCGCAGAGGATAGAAAAAATGATGATAAAAAAAAAAAAAA]
consensusID : consensus_6405#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 441 fasta sequence
[TCCCCTCTAAGGTGAAGTTCTGTACGGCGTCGTTTGGGCTCCGATTCGAGTGTCGCGGTGCGGGGATTGGGTGGCTAGGGTTCCGGTTCGAGTGGTGTCACGATTGACTGGTGCTTATTTCCGTGTCCACCCCGAACCGTGCTACGGAGAAGCAGAACGGCGAGCAGTGAAGAGCTCGAGGGAGGGTTCAGTGATTACTACCGCGGTGCTGCCTGGCTGCTACCTCTTTCTGCCTCTTCATTCCACCGCATCCACCAGCTTCTACTTCTTCAGTCCTTGGCTGTCGGATCGGGCTACCAACCAGTCAACAACAGGTGAGATACTGAGAATCATTCCTCCACAAAAGAGATCCTCCCTATACGAGATGGGTAACGTGAAGATCATTGCTGCCACATATGGGTGGAAAGGGACCATGATCGCACAGGATCACCGTGATAGGAA]
[+] EMBL C72490 [TCCCCTCTAAGGTGAAGTTCTGTACGGCGTCGTTTGGGCTCCGATTCGAGTGTCGCGGTGCGGGGATTGGGTGGCTAGGGTTCCGGTTCGAGTGGTGTCACGATTGACTGGTGCTTATTTCCGTGTCCACCCCGAACCGTGCTACGGAGAAGCAGAACGGCGAGCAGTGAAGAGCTCGAGGGAGGGTTCAGTGATTACTACCGCGGTGCTGCCTGGCTGCTACCTCTTTCTGCCTCTTCATTCCACCGCATCCACCAGCTTCTACTTCTTCAGTCCTTGGCTGTCGGATCGGGCTACCAACCAGTCAACAACAGGTGAGATACTGAGAATCATTCCTCCACAAAAGAGATCCTCCCTATACGAGATGGGTAACGTGAAGATCATTGCTGCCACATATGGGTGGAAAGGGACCATGATCGCACAGGATCACCGTGATAGGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6405#0 CTTCCCTCCTCTCTCTCTCGCACTCACCCGGCGACGCCGACGCCCCACCCGCGCGCGGTT 60
consensus_6405#1 ------------------------------------------------------------
consensus_6405#2 ------------------------------------------------------------
consensus_6405#0 GATCCCCCGTCCACCGCTGCTCGATTTCTCTCCTCTCCCGCGCCGCCCCTCCGCTGTCGT 120
consensus_6405#1 ------------------------------------------------------------
consensus_6405#2 ------------------------------------------------------------
consensus_6405#0 CGCATCCCTCACGTGCTGCCCCTCCGTCGTCGTCGGATCGTCATGCCGCCTGCCGCCGCC 180
consensus_6405#1 ------------------------------------------------------------
consensus_6405#2 ------------------------------------------------------------
consensus_6405#0 ACTTGCTCGTGGAGATGGCGATGATCATCGAAGAACGGCGAGCAGTGAAGAGCTCGAGGG 240
consensus_6405#1 ------------------------------------------------------------
consensus_6405#2 ------------------------------------------------------------
consensus_6405#0 AGGGTTCAGTGATTACTACCGCGGTGCTGCCTGGCTGCTACCTCTTTCTGCCTCTTCATT 300
consensus_6405#1 ------------------------------------------------------------
consensus_6405#2 ------------------------------------------------------------
consensus_6405#0 CCACCGCATCCACCAGCTTCTACTTCTTCAGTCCTTGGCTGTCGGATCGGGCTACCAACC 360
consensus_6405#1 ------------------------------------------------------------
consensus_6405#2 ------------------------------------------------------------
consensus_6405#0 AGTCAACAACAGATCCTCCCTATACGAGATGGGTAACGTGAAGATCATTGCTGCCACATA 420
consensus_6405#1 ------------------------------------------------------------
consensus_6405#2 ------------------------------------------------------------
consensus_6405#0 TGGGTGGAAAGGGACCATGATCGCCACAGGGATCACCGTGATAGAAGCAAAAGAAGATAG 480
consensus_6405#1 ------------------------------------------------------------
consensus_6405#2 ------------------------------------------------------------
consensus_6405#0 CATCGTGATTCTGAATATTCTGATGATCGCGATCGGCCTTGGGACGATGATTCTGAAAGA 540
consensus_6405#1 ------------------------------------------------------------
consensus_6405#2 ------------------------------------------------------------
consensus_6405#0 TCAATAATCAATGGAATATTCTGCACTACCCTAGAGTGAAGGGTGCTGCGGAGGCTAGAG 600
consensus_6405#1 ------------------------------------------------------------
consensus_6405#2 ------------------------------------------------------------
consensus_6405#0 AACAACAGTATTCAGTCCTCCAAATTAGATGTTGCACCATTGTTGGTGACCGGCTGACCG 660
consensus_6405#1 -------------------------------TGGCA--ATTGTCTCCACTAAGCT-ATTG 26
consensus_6405#2 ------------------------------------------------------------
consensus_6405#0 ACATGAATCCATCGCCACTCAGTTTTAAGTTTAACAAAGT---TGCAAGGAAGTTTTCAA 717
consensus_6405#1 CAATGATATCTCTGCCAAAGTAGGTCAAGCTTTTCGGTGTAAATTCCAGTAAGAGTTCTG 86
consensus_6405#2 ------------------------------------------------------------
consensus_6405#0 GATATTGGGGACTTTTATCAGTTTGCCGACTCCACACTTTTTTGGCACCCAGAAATCACT 777
consensus_6405#1 AATGCTGTGC-CTTTTAT-ACCTTGT-GCCTTCATGCCNCT--AGCGCC---ATGTCTCT 138
consensus_6405#2 ------------------------------------------------------------
consensus_6405#0 TCAGTTCCTCTCCTGCACATGAGGACTGCATGTTTGTACAATGAAAGTATTGTGGGGTTT 837
consensus_6405#1 TGTTTTTGGTTTCCCACTATCAGTCACTCCAGCTTTTGTGTT-----TGCTTTCTATTTT 193
consensus_6405#2 -----------------------------------------------TCCCCTCTAAGGT 13
* * *
consensus_6405#0 TATCAAG-ATGCAACAACGGGAAGATT--GAAAAGGCTGCTGCC-TGTAAGATTGAGAGG 893
consensus_6405#1 TTAATAG-ATGCAACACCGGGAAGATT--GAAAAGGCTGCTGCC-TGTAAGATTGAGAGG 249
consensus_6405#2 GAAGTTCTGTACGGCGTCGTTTGGGCTCCGATTCGAGTGTCGCGGTGCGGGGATTGGGTG 73
* * * ** * * ** * ** ** ** * * * *
consensus_6405#0 GCT--GCTTCTGGAGGAAAAAGCACACTACATGGGCAATGACAATGGGAGAGGGATTGAA 951
consensus_6405#1 GCT--GCTTCTGGAGGAAAAAGCACACTACATGGGCAATGACAATGGGAGAGGGATTCAA 307
consensus_6405#2 GCTAGGGTTCCGGTTCGAGTGGTGTCACGATTGACTGGTGCTTATTTCCGTG---TCCAC 130
*** * *** ** * * ** ** ** * * * *
consensus_6405#0 AGGAGAAACACTCCCAAGGAGAAGGAGAAGAGCGAG----GGAAAACACCAGGGTGATGT 1007
consensus_6405#1 AGGAGAAACCCTCCCAAGGAGAAGGAGAAGAGCGAG----GGAAAACCCCAGGGTGATGT 363
consensus_6405#2 CCC--GAACCGTGCTACGGAGAAGCAGAACGGCGAGCAGTGAAGAGCTCGAGGGAGGGTT 188
*** * * * ******* **** ***** * * * * * **** * *
consensus_6405#0 GAGCAAAATCTAATCGGGAAGCACTATATCATACTGTATGATATATTAATACACTATGAT 1067
consensus_6405#1 GAGCAAAATCTAATCGGGAAGCCCTATATCATACTGTATGATATATTAATACCCTATGAT 423
consensus_6405#2 CAGTGATTACTA-CCGCGGTGCTGCCTGGC-TGCTACCT--CTTTCTGCCTCTTCATTCC 244
** * *** ** * ** * * * ** * * * * **
consensus_6405#0 ATTGGTTTCACCTCAGTGTGATATTGAAGCAACAGAGATTGTTTTATCAAGCTATCAGGT 1127
consensus_6405#1 ATTGGTTTCACCTCAGTGTGATATTGAAGCAACAGAGATTGTTTTATCAAGCTATCAGGT 483
consensus_6405#2 ACCGCATCCACCAGCTTCTACTTCTTCAGT--CCTTGGCTGTCGGATCGGGCTACCAACC 302
* * * **** * * * * ** * * *** *** **** **
consensus_6405#0 CA--AAAAAAAAATGAAATCCT-ATTGTCAGCATTTCATAATTTTAGTACTAAATTTTTA 1184
consensus_6405#1 CA--AAAAAAAAATGAAATCCT-ATTGTCAGCATTTCATAATTTTAGTACTAAATTTTTA 540
consensus_6405#2 AGTCAACAACAGGTGAGATACTGAGAATCATTCCTCCACAA-------AAGAGATCCTCC 355
** ** * *** ** ** * *** * ** ** * * ** *
consensus_6405#0 TTTTCTGAATCGATTCATGTATATGGTTTTACCAGACTGAAGCTCTTGATTTAGAG---- 1240
consensus_6405#1 TTTTCTGAATCGATTCATGTATATGGTTTTACCAGACTGAAGCTCTTGATTTAGAGAAAC 600
consensus_6405#2 CTATACGAGATGGGTAACGTGAAGATCATTGCT--GCCACA--TATGGGTGGAAAGGGAC 411
* * ** * * * ** * ** * * * * * * * * **
consensus_6405#0 ------------------------------------------------------------
consensus_6405#1 TTTGCTAGAATACCGTGGCCCAAGCCGCAGAGGATAGAAAAAATGATGATAAAAAAAAAA 660
consensus_6405#2 CATGATCGCACAGGATCACCGTGATAGGAA------------------------------ 441
consensus_6405#0 ----
consensus_6405#1 AAAA 664
consensus_6405#2 ----
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||