cluster # 6410

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Oryza sativa
cluster # 6410 cluster # 6410 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6410#0 length = 780 sequences # 3

consensus_6410#1 length = 520 sequences # 1

consensusID : consensus_6410#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 780
fasta sequence

                              [TTTTTTTCAAGCAGTTTTACTTTTACAAAGATAGAAAAAACATTAATACACAGAGAAACGCTATGATACAAGAGTTCAGTGAAGGTGTAAACAACTTCAGTAAAAGAATTTGAAATCACACCTTTTCGTAGCAAATATACCCCACATTGACATTGACTCTATAAAAGGGTTCTCTCATTAACATGTATGAAGAGATTGTGAATAGACCTCAGATTTCTAGTATAGTCCTTATCTGCTCAGGCGAGTGTTTTACTAAAGACCTTGGGTCAGGGTAGCAATTCTTTGGATCCACCACTGCCTTATAGATCAGTTCATAAGCTTCCGCCAGAGCTCTAGCCAAACCATAGCATGCATCAGAACGCAACCTTGGTACCTGCAGCTGCTCAAATTCAGGCAAGGAACCTTCTGTTCCAGTCACTAGACCATAGAATGCCTTCAAGCATTCCAACAACATTTGCGGTGATGTCTCCACAATATCAGCCAAAGGTCGTGCGTCATCCTTGCTGCCAAAAAAACTATAGTCCTTTATGTATGGCATCTTGTTTGATAATCCACATTTCCTAAAAATGCTATCAGCTTCTTTATCTACTAGGGGGGGCAAATGTGTTTCAATCATAAACCGCAGGGTGTTAATATAACTTGTAACAACATCTTGGCCCATCAATGGTTCCTGAATAACTGACAAACAGTTGATGAGGGAAATTTTGGATGAAAATTCACCACTCAGAAAGGATGTTGATGAATTCTTAAATAAAATAGCATCAACTGAGATTGAATCTC]

[+] EMBL CF327168             [TTTTTTTCAAGCAGTTTTACTTTTACAAAGATAGAAAAAACATTAATACACAGAGAAACGCTATGATACAAGAGTTCAGTGAAGGTGTAAACAACTTCAGTAAAAGAATTTGAAATCACACCTTTTCGTAGCAAATATACCCCACATTGACATTGACTCTATAAAAGGGTTCTCTCATTAACATGTATGAAGAGATTGTGAATAGACCTCAGATTTCTAGTATAGTCCTTATCTGCTCAGGCGAGTGTTTTACTAAAGACCTTGGGTCAGGGTAGCAATTCTTTGGATCCACCACTGCCTTATAGATCAGTTCATAAGCTTCCGCCAGAGCTCTAGCCAAACCATAGCATGCATCAGAACGCAACCTTGGTACCTGCAGCTGCTCAAATTCAGGCAAGGAACCTTCTGTTCCAGTCACTAGACCATAGAATGCCTTCAAGCATTCCAACAACATTTGCGGTGATGTCTCCACAATATCAGCCAAAGGTCGTGCGTCATCCT                                                                                                                                                                                                                                                                                       ]
[+] EMBL CB681184             [                                                                                         AACAACTTCAGTAAAAAAATTTGAAATCACACCTTTTCGTAACAAATATACCCCACATTGACATTGACTCTATAAAAGGGGTCTCTCATTAACATGTATGAAAAAATTGGGAATAAACCTCAAATTTCTAGTATAGTCCTTATCTGCTCAGGGGAGTGTTTTACTAAAAACCTTGGGGCAGGGGAACAATTCTTTGGATCCACCACTGCCTTATAAATCAGTTCATAAGCTTCCGCCAAAACTCTAGCCAAACCATAACATGCATCAAAACGCAACCTTGGTACCTGCAGCTGCTCAAATTCAGGGAAGGAACCTTCTGTTCCAGTCACTAAACCATAAAATGCCTTCAAGCATTCCAACAACATTTGCGGGGATGTCTCCACAATATCAGCCAAAGGGCGTGCGTCATCCTTGCTGCCAAAAAAACTATAGTCCTTTATGTATGGCATCTTGTTTGATAATCCACATTTCCTAAAAATGCTATCAGCTTCTTTATCTACTAGGGGGGGCAAATGTGTTTCAATCATAAACCGCAGGGTGTTAATATAACTTGTAACAACATCTTGGCCCATCAATGGTTCCTGAATAACTGACAAACAGTTGATGAGGGAAATTTTGGATGAAAATTCACCACTCAGAAAGGATGTTGATGAATTCTTAAATAAAATAGCATCAACTGAGATTGAATCTC]
[-] EMBL AK058500             [                                                                                          ACAACTTCAGTAAAAGAATTTGAAATCACACCTTTTCGTAGCAAATATACCCCACATTGACATTGACTCTATAAAAGGGTTCTCTCATTAACATGTATGAAGAGATTGTGAATAGACCTCAGATTTCTAGTATAGTCCTTATCTGCTCAGGCGAGTGTTTTACTAAAGACCTTGGGTCAGGGTAGCAATTCTTTGGATCCACCACTGCCTTATAGATCAGTTCATAAGCTTCCGCCAGAGCTCTAGCCAAACCATAGCATGCATCAGAACGCAACCTTGGTACCTGCAGCTGCTCAAATTCAGGCAAGGAACCTTCTGTTCCAGTCACTAGACCATAGAATGCCTTCAAGCATTCCAACAACATTTGCGGTGATGTCTCCACAATATCAGCCAAAGGTCGTGCGTCATCCTTGCTGCCAGTAGAGCTATAGTCCTTTATGTATGGCATCTTGTTTG                                                                                                                                                                                                                                          ]




>consensus_6410#0
TTTTTTTCAAGCAGTTTTACTTTTACAAAGATAGAAAAAACATTAATACACAGAGAAACG
CTATGATACAAGAGTTCAGTGAAGGTGTAAACAACTTCAGTAAAAGAATTTGAAATCACA
CCTTTTCGTAGCAAATATACCCCACATTGACATTGACTCTATAAAAGGGTTCTCTCATTA
ACATGTATGAAGAGATTGTGAATAGACCTCAGATTTCTAGTATAGTCCTTATCTGCTCAG
GCGAGTGTTTTACTAAAGACCTTGGGTCAGGGTAGCAATTCTTTGGATCCACCACTGCCT
TATAGATCAGTTCATAAGCTTCCGCCAGAGCTCTAGCCAAACCATAGCATGCATCAGAAC
GCAACCTTGGTACCTGCAGCTGCTCAAATTCAGGCAAGGAACCTTCTGTTCCAGTCACTA
GACCATAGAATGCCTTCAAGCATTCCAACAACATTTGCGGTGATGTCTCCACAATATCAG
CCAAAGGTCGTGCGTCATCCTTGCTGCCAAAAAAACTATAGTCCTTTATGTATGGCATCT
TGTTTGATAATCCACATTTCCTAAAAATGCTATCAGCTTCTTTATCTACTAGGGGGGGCA
AATGTGTTTCAATCATAAACCGCAGGGTGTTAATATAACTTGTAACAACATCTTGGCCCA
TCAATGGTTCCTGAATAACTGACAAACAGTTGATGAGGGAAATTTTGGATGAAAATTCAC
CACTCAGAAAGGATGTTGATGAATTCTTAAATAAAATAGCATCAACTGAGATTGAATCTC

consensusID : consensus_6410#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 520
fasta sequence

                              [TTTTTTTTTTTGAAGGGGTAAACAACTTCAGTAAAAGAATTTGAAATCACACCTTTTCGTAGCAAATATACCCCACATGACATTGACTCTATAAAAGGGTTCTCTCATTAACATGTATGAAGAGATTGTGAATAGACCTCAGATTTCTAGTATAGTCCTTATCTGTCAGGCGAGGTGTTTTACTAAAGACCTTGGGTCAGGGTAGCAATTCTTGGGATCCACCACGTGCCTTATAGATCAGTTCATAAGCTTCCGCCAGAGCTCTAGCCAAACCATAGCAGTGCATCAGAACGCAACCTTGGTACCTGCAGCTGTCAAATTCAGGCAAGGAACCTTCTGTTCCAGTCACTAGACCATAGAAGTGCCTTCAAGCATTCCAACAACATTGNGGTGATGTCTCCACAATATCAGCAAAGGTCGTGCGTCATCCTTGCTGCAGTAGAACTATAGTCCTTTATGTATTGGGATCTTGTTGGATAGTCCACATTTCCTAAGAATGGTATCAGGTTCTTTTATCTCA]

[-] EMBL BM038484             [TTTTTTTTTTTGAAGGGGTAAACAACTTCAGTAAAAGAATTTGAAATCACACCTTTTCGTAGCAAATATACCCCACATGACATTGACTCTATAAAAGGGTTCTCTCATTAACATGTATGAAGAGATTGTGAATAGACCTCAGATTTCTAGTATAGTCCTTATCTGTCAGGCGAGGTGTTTTACTAAAGACCTTGGGTCAGGGTAGCAATTCTTGGGATCCACCACGTGCCTTATAGATCAGTTCATAAGCTTCCGCCAGAGCTCTAGCCAAACCATAGCAGTGCATCAGAACGCAACCTTGGTACCTGCAGCTGTCAAATTCAGGCAAGGAACCTTCTGTTCCAGTCACTAGACCATAGAAGTGCCTTCAAGCATTCCAACAACATTGNGGTGATGTCTCCACAATATCAGCAAAGGTCGTGCGTCATCCTTGCTGCAGTAGAACTATAGTCCTTTATGTATTGGGATCTTGTTGGATAGTCCACATTTCCTAAGAATGGTATCAGGTTCTTTTATCTCA]




>consensus_6410#1
TTTTTTTTTTTGAAGGGGTAAACAACTTCAGTAAAAGAATTTGAAATCACACCTTTTCGT
AGCAAATATACCCCACATGACATTGACTCTATAAAAGGGTTCTCTCATTAACATGTATGA
AGAGATTGTGAATAGACCTCAGATTTCTAGTATAGTCCTTATCTGTCAGGCGAGGTGTTT
TACTAAAGACCTTGGGTCAGGGTAGCAATTCTTGGGATCCACCACGTGCCTTATAGATCA
GTTCATAAGCTTCCGCCAGAGCTCTAGCCAAACCATAGCAGTGCATCAGAACGCAACCTT
GGTACCTGCAGCTGTCAAATTCAGGCAAGGAACCTTCTGTTCCAGTCACTAGACCATAGA
AGTGCCTTCAAGCATTCCAACAACATTGNGGTGATGTCTCCACAATATCAGCAAAGGTCG
TGCGTCATCCTTGCTGCAGTAGAACTATAGTCCTTTATGTATTGGGATCTTGTTGGATAG
TCCACATTTCCTAAGAATGGTATCAGGTTCTTTTATCTCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6410#0      TTTTTTTCAAGCAGTTTTACTTTTACAAAGATAGAAAAAACATTAATACACAGAGAAACG 60
consensus_6410#1      ------------------------------------------------------------
                                                                                  

consensus_6410#0      CTATGATACAAGAGTTCAGTGAAGGTGTAAACAACTTCAGTAAAAGAATTTGAAATCACA 120
consensus_6410#1      ---------TTTTTTTTTTTGAAGGGGTAAACAACTTCAGTAAAAGAATTTGAAATCACA 51
                                    **   ****** **********************************

consensus_6410#0      CCTTTTCGTAGCAAATATACCCCACATTGACATTGACTCTATAAAAGGGTTCTCTCATTA 180
consensus_6410#1      CCTTTTCGTAGCAAATATACCCCACAT-GACATTGACTCTATAAAAGGGTTCTCTCATTA 110
                      *************************** ********************************

consensus_6410#0      ACATGTATGAAGAGATTGTGAATAGACCTCAGATTTCTAGTATAGTCCTTATCTGCTCAG 240
consensus_6410#1      ACATGTATGAAGAGATTGTGAATAGACCTCAGATTTCTAGTATAGTCCTTATCTG-TCAG 169
                      ******************************************************* ****

consensus_6410#0      GCGAG-TGTTTTACTAAAGACCTTGGGTCAGGGTAGCAATTCTTTGGATCCACCAC-TGC 298
consensus_6410#1      GCGAGGTGTTTTACTAAAGACCTTGGGTCAGGGTAGCAATTCTTGGGATCCACCACGTGC 229
                      ***** ************************************** *********** ***

consensus_6410#0      CTTATAGATCAGTTCATAAGCTTCCGCCAGAGCTCTAGCCAAACCATAGCA-TGCATCAG 357
consensus_6410#1      CTTATAGATCAGTTCATAAGCTTCCGCCAGAGCTCTAGCCAAACCATAGCAGTGCATCAG 289
                      *************************************************** ********

consensus_6410#0      AACGCAACCTTGGTACCTGCAGCTGCTCAAATTCAGGCAAGGAACCTTCTGTTCCAGTCA 417
consensus_6410#1      AACGCAACCTTGGTACCTGCAGCTG-TCAAATTCAGGCAAGGAACCTTCTGTTCCAGTCA 348
                      ************************* **********************************

consensus_6410#0      CTAGACCATAGAA-TGCCTTCAAGCATTCCAACAACATTTGCGGTGATGTCTCCACAATA 476
consensus_6410#1      CTAGACCATAGAAGTGCCTTCAAGCATTCCAACAACATT-GNGGTGATGTCTCCACAATA 407
                      ************* ************************* * ******************

consensus_6410#0      TCAGCCAAAGGTCGTGCGTCATCCTTGCTGCCAAAAAAACTATAGTCCTTTATGTAT-GG 535
consensus_6410#1      TCAGC-AAAGGTCGTGCGTCATCCTTGCTGC-AGTAGAACTATAGTCCTTTATGTATTGG 465
                      ***** ************************* *  * ******************** **

consensus_6410#0      CATCTTGTTTGATAATCCACATTTCCTAAAAATGCTATCAGCTTCTTTATCTACTAGGGG 595
consensus_6410#1      GATCTTGTTGGATAGTCCACATTTCCTAAGAATGGTATCAGGTTCTTT-TATCTCA---- 520
                       ******** **** ************** **** ****** ****** * *   *    

consensus_6410#0      GGGCAAATGTGTTTCAATCATAAACCGCAGGGTGTTAATATAACTTGTAACAACATCTTG 655
consensus_6410#1      ------------------------------------------------------------
                                                                                  

consensus_6410#0      GCCCATCAATGGTTCCTGAATAACTGACAAACAGTTGATGAGGGAAATTTTGGATGAAAA 715
consensus_6410#1      ------------------------------------------------------------
                                                                                  

consensus_6410#0      TTCACCACTCAGAAAGGATGTTGATGAATTCTTAAATAAAATAGCATCAACTGAGATTGA 775
consensus_6410#1      ------------------------------------------------------------
                                                                                  

consensus_6410#0      ATCTC 780
consensus_6410#1      -----