cluster # 6420

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Oryza sativa
cluster # 6420 cluster # 6420 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6420#0 length = 1436 sequences # 2

consensus_6420#1 length = 639 sequences # 2

consensusID : consensus_6420#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1436
fasta sequence

                              [TTTCTTCCCCCCTCTCTCTCCCCCCAGCATCGTACCAAACCACACAACCGCAGCGACGGCAACACGAAGCTCTCCTCTCCGGCGAGAATAGCCAAGAACGCGACGCGACCACACCCAAGAGGCCGAACAGATCGAGCTCAAGAAGGTTTTAGCCCATGGGGATGGATTACTACAAGATCCTGGGCGTCGACAAGGCCGCCAGCGACGACGACCTCAAGAAGGCGTACCGCAAGCTCGCCATGAAGTGGCACCCTGACAAGAACCCCAACAACAAGAAGGAGGCGGAGAACAAGTTCAAGCAGATCTCCGAGGCGTACGAGGTGCTGAGCGACCCGCAGAAGCGAGCGGTGTACGACCAGTACGGCGAGGAGGGGCTCAAGGGGCAGGTCCCGCCGCCGGGCGCCGGCGGGGCCGGCCCGGGAGGCGCGACGTTCTTCTCCACCGGCGGCGACGGGCCCAACGTGTTCCGGTTCAACCCGCGCAACGCGGAGGACATCTTCGCGGAGTTCTTCGGCTCGTCCAGCCCGTTCGGCGGCATGGGCGGTGGCATGGGCGGCGGCATGGGGGGAGGGCCCGGGATGCGGACAGGCGGCACGCGGTTCTCGTCGTCGATCTTCGGGGACGACATCTTCGGCTCGGCGTTCGGCGGCGGCGCCGACGGGCACCACGGGATGCACGGCGGTGGCGCCGGGAGGGCGTTGAAGGCGCCGGCGATCGAGAGGAAGCTGCCGTGCAGCCTGGAGGAGCTCTACAAAGGCACCACCAAGAAGATGAAGATTTCCAGGGAAATCGCTGACGCCAGTGGGAAGACAATTCCAGTGGAGGAGATCCTGACCATCGATGTGAAGCCTGGGTGGAAGAAGGGCACCAAGATCACCTTCCCGGAGAAAGGAAACGAGCAGCCGAACGTGATCCCGGCCGACCTCGTCTTCATCATCGACGAGAAGCCGCACCCGGTGTTCACCCGTGACGGCAACGACCTCGTCGTGACGCAGAAGATACCGCTCGCCGAGGCCCTGACCGGCCACACCGTCCACCTGACTACGCTCGACGGCCGCAGCCTGACGATCCCGATCACCTCCGTCATCAACCCGGGCTACGAGGAGGTCGTCCGCGGCGAGGGCATGCCCATCCCCAAGGACCCCTCCAAGAAGGGCAATCTCAGGGTCAAGTTCGACATCAAGTTCCCGGCGAGGCTCACCGCCGACCAGAAGTCCGGCGTCAAGCGGCTGCTGGGGCAGTAGATCGAGCAACTGCACCGATGTAGTATCAAAGCCTTTTCTTGTGTTGGTGGTGTTGAACTGGTGATCATCCGGCAGCCGCGACGAATTTCTCGTTGAGAGCTTTTTCAGGTCATGTGACACGATGCAAAAAGGCAATGCGGCCTTAGATGTGTGAGATACTGATGAGAACTAGTAGAAACGTTATACACAGCT]

[+] EMBL AK067414             [TTTCTTCCCCCCTCTCTCTCCCCCCAGCATCGTACCAAACCACACAACCGCAGCGACGGCAACACGAAGCTCTCCTCTCCGGCGAGAATAGCCAAGAACGCGACGCGACCACACCCAAGAGGCCGAACAGATCGAGCTCAAGAAGGTTTTAGCCCATGGGGATGGATTACTACAAGATCCTGGGCGTCGACAAGGCCGCCAGCGACGACGACCTCAAGAAGGCGTACCGCAAGCTCGCCATGAAGTGGCACCCTGACAAGAACCCCAACAACAAGAAGGAGGCGGAGAACAAGTTCAAGCAGATCTCCGAGGCGTACGAGGTGCTGAGCGACCCGCAGAAGCGAGCGGTGTACGACCAGTACGGCGAGGAGGGGCTCAAGGGGCAGGTCCCGCCGCCGGGCGCCGGCGGGGCCGGCCCGGGAGGCGCGACGTTCTTCTCCACCGGCGGCGACGGGCCCAACGTGTTCCGGTTCAACCCGCGCAACGCGGAGGACATCTTCGCGGAGTTCTTCGGCTCGTCCAGCCCGTTCGGCGGCATGGGCGGTGGCATGGGCGGCGGCATGGGGGGAGGGCCCGGGATGCGGACAGGCGGCACGCGGTTCTCGTCGTCGATCTTCGGGGACGACATCTTCGGCTCGGCGTTCGGCGGCGGCGCCGACGGGCACCACGGGATGCACGGCGGTGGCGCCGGGAGGGCGTTGAAGGCGCCGGCGATCGAGAGGAAGCTGCCGTGCAGCCTGGAGGAGCTCTACAAAGGCACCACCAAGAAGATGAAGATTTCCAGGGAAATCGCTGACGCCAGTGGGAAGACAATTCCAGTGGAGGAGATCCTGACCATCGATGTGAAGCCTGGGTGGAAGAAGGGCACCAAGATCACCTTCCCGGAGAAAGGAAACGAGCAGCCGAACGTGATCCCGGCCGACCTCGTCTTCATCATCGACGAGAAGCCGCACCCGGTGTTCACCCGTGACGGCAACGACCTCGTCGTGACGCAGAAGATACCGCTCGCCGAGGCCCTGACCGGCCACACCGTCCACCTGACTACGCTCGACGGCCGCAGCCTGACGATCCCGATCACCTCCGTCATCAACCCGGGCTACGAGGAGGTCGTCCGCGGCGAGGGCATGCCCATCCCCAAGGACCCCTCCAAGAAGGGCAATCTCAGGGTCAAGTTCGACATCAAGTTCCCGGCGAGGCTCACCGCCGACCAGAAGTCCGGCGTCAAGCGGCTGCTGGGGCAGTAGATCGAGCAACTGCACCGATGTAGTATCAAAGCCTTTTCTTGTGTTGGTGGTGTTGAACTGGTGATCATCCGGCAGCCGCGACGAATTTCTCGTTGAGAGCTTTTTCAGGTCATGTGACACGATGCAAAAAGGCAATGCGGCCTTAGATGTGTGAGATACTGATGAGAACTAGTAGAAACGTTATACACAGCT]
[+] EMBL C28613               [                                           tagACCGCAGCGACGGCAACACGAAGCTCTCCTCTCCGGCGAGAATAGCCAAGAACGCGACG GACCACACCCAAGAGGCCGAACAGATCGAGCTCAAGAAGGTTTTAGCCCATGGGGATGGATTACTACAAGATCCTGGGCGTCGACAAGGCCGCCAGCNACGACGACCTCAAGAAGGCGTACCGCAAGCTCGCCATGAAGTGGCACCCTGACAAGAACCCCAACAACAAGAAGGAGGCGGAGAACAAGTTCAAGCAGATCTCCGAGGCGTACGAGGTGCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]




>consensus_6420#0
TTTCTTCCCCCCTCTCTCTCCCCCCAGCATCGTACCAAACCACACAACCGCAGCGACGGC
AACACGAAGCTCTCCTCTCCGGCGAGAATAGCCAAGAACGCGACGCGACCACACCCAAGA
GGCCGAACAGATCGAGCTCAAGAAGGTTTTAGCCCATGGGGATGGATTACTACAAGATCC
TGGGCGTCGACAAGGCCGCCAGCGACGACGACCTCAAGAAGGCGTACCGCAAGCTCGCCA
TGAAGTGGCACCCTGACAAGAACCCCAACAACAAGAAGGAGGCGGAGAACAAGTTCAAGC
AGATCTCCGAGGCGTACGAGGTGCTGAGCGACCCGCAGAAGCGAGCGGTGTACGACCAGT
ACGGCGAGGAGGGGCTCAAGGGGCAGGTCCCGCCGCCGGGCGCCGGCGGGGCCGGCCCGG
GAGGCGCGACGTTCTTCTCCACCGGCGGCGACGGGCCCAACGTGTTCCGGTTCAACCCGC
GCAACGCGGAGGACATCTTCGCGGAGTTCTTCGGCTCGTCCAGCCCGTTCGGCGGCATGG
GCGGTGGCATGGGCGGCGGCATGGGGGGAGGGCCCGGGATGCGGACAGGCGGCACGCGGT
TCTCGTCGTCGATCTTCGGGGACGACATCTTCGGCTCGGCGTTCGGCGGCGGCGCCGACG
GGCACCACGGGATGCACGGCGGTGGCGCCGGGAGGGCGTTGAAGGCGCCGGCGATCGAGA
GGAAGCTGCCGTGCAGCCTGGAGGAGCTCTACAAAGGCACCACCAAGAAGATGAAGATTT
CCAGGGAAATCGCTGACGCCAGTGGGAAGACAATTCCAGTGGAGGAGATCCTGACCATCG
ATGTGAAGCCTGGGTGGAAGAAGGGCACCAAGATCACCTTCCCGGAGAAAGGAAACGAGC
AGCCGAACGTGATCCCGGCCGACCTCGTCTTCATCATCGACGAGAAGCCGCACCCGGTGT
TCACCCGTGACGGCAACGACCTCGTCGTGACGCAGAAGATACCGCTCGCCGAGGCCCTGA
CCGGCCACACCGTCCACCTGACTACGCTCGACGGCCGCAGCCTGACGATCCCGATCACCT
CCGTCATCAACCCGGGCTACGAGGAGGTCGTCCGCGGCGAGGGCATGCCCATCCCCAAGG
ACCCCTCCAAGAAGGGCAATCTCAGGGTCAAGTTCGACATCAAGTTCCCGGCGAGGCTCA
CCGCCGACCAGAAGTCCGGCGTCAAGCGGCTGCTGGGGCAGTAGATCGAGCAACTGCACC
GATGTAGTATCAAAGCCTTTTCTTGTGTTGGTGGTGTTGAACTGGTGATCATCCGGCAGC
CGCGACGAATTTCTCGTTGAGAGCTTTTTCAGGTCATGTGACACGATGCAAAAAGGCAAT
GCGGCCTTAGATGTGTGAGATACTGATGAGAACTAGTAGAAACGTTATACACAGCT

consensusID : consensus_6420#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 639
fasta sequence

                              [ATCGCTGACGCCAGTGGGAAGACAATTCCAGTGGAGGAGATCCTGACCATCGATGTGAAGCCTGGGTGGAAGAAGGGCACCAAGATCACCTTCCCGGAGAAAGGAAACGAGCAGCCGAACGTGATCCCGGCCGACCTCGTCTTCATCATCGACGAGAAGCCGCACCCGGTGTTCACCCGTGACGGCAACGACCTCGTCGTGACGCAGAAGATACCGCTCGCCGAGGCCCTGACCGGCCACACCGTCCACCTGACTACGCTCGACGGCCGCAGCCTGACGATCCCGATCACCTCCGTCATCAACCCGGGCTACGAGGAGGTCGTCCGCGGCGAGGGCATGCCCATCCCCAAG-GACCCCTCCA-AGAAGGGCAATCTCAGGGTCAAGTTCGACATCAAGTTCCCGGCGAGGCTCACCGCCGACCAGAAGTCCAGCCGCGACGAATTTCTCGTTGAGAGCTTTTTCAGGTCATGTGACACGATGCAAAAAGGCAATGCGGCCTTAGATGTGTGAGATACTGATGAGAACTAGTAGAAACGTTATACACAGCTTTTGTGGTGCATAGAGGAGGAATTCCTTTGTACAATCTCTTTCAGGTTGGTAGTCTGATTCACATTGCTTTGGAGTAAAAAACTAAAAAAA]

[+] EMBL CF312959             [ATCGCTGACGCCAGTGGGAAGACAATTCCAGTGGAGGAGATCCTGACCATCGATGTGAAGCCTGGGTGGAAGAAGGGCACCAAGATCACCTTCCCGGAGAAAGGAAACGAGCAGCCGAACGTGATCCCGGCCGACCTCGTCTTCATCATCGACGAGAAGCCGCACCCGGTGTTCACCCGTGACGGCAACGACCTCGTCGTGACGCAGAAGATACCGCTCGCCGAGGCCCTGACCGGCCACACCGTCCACCTGACTACGCTCGACGGCCGCAGCCTGACGATCCCGATCACCTCCGTCATCAACCCGGGCTACGAGGAGGTCGTCCGCGGCGAGGGCATGCCCATCCCCAAG GACCCCTCCA AGAAGGGCAATCTCAGGGTCAAGTTCGACATCAAGTTCCCGGCGAGGCTCACCGCCGACCAGAAGTCCAGCCGCGACGAATTTCTCGTTGAGAGCTTTTTCAGGTCATGTGACACGATGCAAAAAGGCAATGCGGCCTTAGATGTGTGA                                                                                                                                 ]
[-] EMBL CF312960             [                                                                                                                                                                                                                                                                                CCTGACGATCCCGATCACCTCCGTCATCAACCCGGGCTACGAGGAGGTCGTCCGCGGCGAGGGCATGCCCATCCCCAAGNGACCCCTCCANAGAAGGGCAATCTCAGGGTCAAGTTCGACATCAAGTTCCCGGCGAGGCTCACCGCCGACCAGAAGTCCAGCCGCGACGAATTTCTCGTTGAGAGCTTTTTCAGGTCATGTGACACGATGCAAAAAGGCAATGCGGCCTTAGATGTGTGAGATACTGATGAGAACTAGTAGAAACGTTATACACAGCTTTTGTGGTGCATAGAGGAGGAATTCCTTTGTACAATCTCTTTCAGGTTGGTAGTCTGATTCACATTGCTTTGGAGTAAAAAACTAAAAAAA]




>consensus_6420#1
ATCGCTGACGCCAGTGGGAAGACAATTCCAGTGGAGGAGATCCTGACCATCGATGTGAAG
CCTGGGTGGAAGAAGGGCACCAAGATCACCTTCCCGGAGAAAGGAAACGAGCAGCCGAAC
GTGATCCCGGCCGACCTCGTCTTCATCATCGACGAGAAGCCGCACCCGGTGTTCACCCGT
GACGGCAACGACCTCGTCGTGACGCAGAAGATACCGCTCGCCGAGGCCCTGACCGGCCAC
ACCGTCCACCTGACTACGCTCGACGGCCGCAGCCTGACGATCCCGATCACCTCCGTCATC
AACCCGGGCTACGAGGAGGTCGTCCGCGGCGAGGGCATGCCCATCCCCAAGGACCCCTCC
AAGAAGGGCAATCTCAGGGTCAAGTTCGACATCAAGTTCCCGGCGAGGCTCACCGCCGAC
CAGAAGTCCAGCCGCGACGAATTTCTCGTTGAGAGCTTTTTCAGGTCATGTGACACGATG
CAAAAAGGCAATGCGGCCTTAGATGTGTGAGATACTGATGAGAACTAGTAGAAACGTTAT
ACACAGCTTTTGTGGTGCATAGAGGAGGAATTCCTTTGTACAATCTCTTTCAGGTTGGTA
GTCTGATTCACATTGCTTTGGAGTAAAAAACTAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6420#0      TTTCTTCCCCCCTCTCTCTCCCCCCAGCATCGTACCAAACCACACAACCGCAGCGACGGC 60
consensus_6420#1      ------------------------------------------------------------
                                                                                  

consensus_6420#0      AACACGAAGCTCTCCTCTCCGGCGAGAATAGCCAAGAACGCGACGCGACCACACCCAAGA 120
consensus_6420#1      ------------------------------------------------------------
                                                                                  

consensus_6420#0      GGCCGAACAGATCGAGCTCAAGAAGGTTTTAGCCCATGGGGATGGATTACTACAAGATCC 180
consensus_6420#1      ------------------------------------------------------------
                                                                                  

consensus_6420#0      TGGGCGTCGACAAGGCCGCCAGCGACGACGACCTCAAGAAGGCGTACCGCAAGCTCGCCA 240
consensus_6420#1      ------------------------------------------------------------
                                                                                  

consensus_6420#0      TGAAGTGGCACCCTGACAAGAACCCCAACAACAAGAAGGAGGCGGAGAACAAGTTCAAGC 300
consensus_6420#1      ------------------------------------------------------------
                                                                                  

consensus_6420#0      AGATCTCCGAGGCGTACGAGGTGCTGAGCGACCCGCAGAAGCGAGCGGTGTACGACCAGT 360
consensus_6420#1      ------------------------------------------------------------
                                                                                  

consensus_6420#0      ACGGCGAGGAGGGGCTCAAGGGGCAGGTCCCGCCGCCGGGCGCCGGCGGGGCCGGCCCGG 420
consensus_6420#1      ------------------------------------------------------------
                                                                                  

consensus_6420#0      GAGGCGCGACGTTCTTCTCCACCGGCGGCGACGGGCCCAACGTGTTCCGGTTCAACCCGC 480
consensus_6420#1      ------------------------------------------------------------
                                                                                  

consensus_6420#0      GCAACGCGGAGGACATCTTCGCGGAGTTCTTCGGCTCGTCCAGCCCGTTCGGCGGCATGG 540
consensus_6420#1      ------------------------------------------------------------
                                                                                  

consensus_6420#0      GCGGTGGCATGGGCGGCGGCATGGGGGGAGGGCCCGGGATGCGGACAGGCGGCACGCGGT 600
consensus_6420#1      ------------------------------------------------------------
                                                                                  

consensus_6420#0      TCTCGTCGTCGATCTTCGGGGACGACATCTTCGGCTCGGCGTTCGGCGGCGGCGCCGACG 660
consensus_6420#1      ------------------------------------------------------------
                                                                                  

consensus_6420#0      GGCACCACGGGATGCACGGCGGTGGCGCCGGGAGGGCGTTGAAGGCGCCGGCGATCGAGA 720
consensus_6420#1      ------------------------------------------------------------
                                                                                  

consensus_6420#0      GGAAGCTGCCGTGCAGCCTGGAGGAGCTCTACAAAGGCACCACCAAGAAGATGAAGATTT 780
consensus_6420#1      ------------------------------------------------------------
                                                                                  

consensus_6420#0      CCAGGGAAATCGCTGACGCCAGTGGGAAGACAATTCCAGTGGAGGAGATCCTGACCATCG 840
consensus_6420#1      --------ATCGCTGACGCCAGTGGGAAGACAATTCCAGTGGAGGAGATCCTGACCATCG 52
                              ****************************************************

consensus_6420#0      ATGTGAAGCCTGGGTGGAAGAAGGGCACCAAGATCACCTTCCCGGAGAAAGGAAACGAGC 900
consensus_6420#1      ATGTGAAGCCTGGGTGGAAGAAGGGCACCAAGATCACCTTCCCGGAGAAAGGAAACGAGC 112
                      ************************************************************

consensus_6420#0      AGCCGAACGTGATCCCGGCCGACCTCGTCTTCATCATCGACGAGAAGCCGCACCCGGTGT 960
consensus_6420#1      AGCCGAACGTGATCCCGGCCGACCTCGTCTTCATCATCGACGAGAAGCCGCACCCGGTGT 172
                      ************************************************************

consensus_6420#0      TCACCCGTGACGGCAACGACCTCGTCGTGACGCAGAAGATACCGCTCGCCGAGGCCCTGA 1020
consensus_6420#1      TCACCCGTGACGGCAACGACCTCGTCGTGACGCAGAAGATACCGCTCGCCGAGGCCCTGA 232
                      ************************************************************

consensus_6420#0      CCGGCCACACCGTCCACCTGACTACGCTCGACGGCCGCAGCCTGACGATCCCGATCACCT 1080
consensus_6420#1      CCGGCCACACCGTCCACCTGACTACGCTCGACGGCCGCAGCCTGACGATCCCGATCACCT 292
                      ************************************************************

consensus_6420#0      CCGTCATCAACCCGGGCTACGAGGAGGTCGTCCGCGGCGAGGGCATGCCCATCCCCAAGG 1140
consensus_6420#1      CCGTCATCAACCCGGGCTACGAGGAGGTCGTCCGCGGCGAGGGCATGCCCATCCCCAAGG 352
                      ************************************************************

consensus_6420#0      ACCCCTCCAAGAAGGGCAATCTCAGGGTCAAGTTCGACATCAAGTTCCCGGCGAGGCTCA 1200
consensus_6420#1      ACCCCTCCAAGAAGGGCAATCTCAGGGTCAAGTTCGACATCAAGTTCCCGGCGAGGCTCA 412
                      ************************************************************

consensus_6420#0      CCGCCGACCAGAAGTCCGGCGTCAAGCGGCTGCTGGGGCAGTAGATCGAGCAACTGCACC 1260
consensus_6420#1      CCGCCGACCAGAAGTCCAGCCGCGACGAATTTCTCGTTGAG-AGCTTTTTCAGGTCATGT 471
                      ***************** **  * *     * ** *   ** ** *    **  *     

consensus_6420#0      GATGTAGTATCAAAGCCTTTTCTTGTGTTGGTGGTGTTGAA--CTGGTGATCATCCGGCA 1318
consensus_6420#1      GACACGATGCAAAAAGGCAATGCGGCCTTAGATGTGTGAGATACTGATGAG-AACTAGTA 530
                      **     *   ***      *   *  ** *  ****   *  *** ***  * *  * *

consensus_6420#0      GCCGCGACGAATTTCTCGTTGAGAGCTTTTTCAGGTCATGTGACACGATGCAAAAAGGCA 1378
consensus_6420#1      GAAACGTTATACACAGCTTTTGTGGTGCATAGAGG--AGGAATTCCTTTGTACAATCTCT 588
                      *   **    *     * **    *    *  ***  * *     *  ** * **   * 

consensus_6420#0      ATGCGGCCTTAGATGTGTGAGATACTGATGAGAACTAGTAGAAACGTTATACACAGCT 1436
consensus_6420#1      TTCAGGTTGGTAGTCTGATTCACATTGCTTTGGAGTA--AAAAACTAAAAAAA----- 639
                       *  **       * **    * * ** *  * * **  * ****   * * *