These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6420#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1436 fasta sequence [TTTCTTCCCCCCTCTCTCTCCCCCCAGCATCGTACCAAACCACACAACCGCAGCGACGGCAACACGAAGCTCTCCTCTCCGGCGAGAATAGCCAAGAACGCGACGCGACCACACCCAAGAGGCCGAACAGATCGAGCTCAAGAAGGTTTTAGCCCATGGGGATGGATTACTACAAGATCCTGGGCGTCGACAAGGCCGCCAGCGACGACGACCTCAAGAAGGCGTACCGCAAGCTCGCCATGAAGTGGCACCCTGACAAGAACCCCAACAACAAGAAGGAGGCGGAGAACAAGTTCAAGCAGATCTCCGAGGCGTACGAGGTGCTGAGCGACCCGCAGAAGCGAGCGGTGTACGACCAGTACGGCGAGGAGGGGCTCAAGGGGCAGGTCCCGCCGCCGGGCGCCGGCGGGGCCGGCCCGGGAGGCGCGACGTTCTTCTCCACCGGCGGCGACGGGCCCAACGTGTTCCGGTTCAACCCGCGCAACGCGGAGGACATCTTCGCGGAGTTCTTCGGCTCGTCCAGCCCGTTCGGCGGCATGGGCGGTGGCATGGGCGGCGGCATGGGGGGAGGGCCCGGGATGCGGACAGGCGGCACGCGGTTCTCGTCGTCGATCTTCGGGGACGACATCTTCGGCTCGGCGTTCGGCGGCGGCGCCGACGGGCACCACGGGATGCACGGCGGTGGCGCCGGGAGGGCGTTGAAGGCGCCGGCGATCGAGAGGAAGCTGCCGTGCAGCCTGGAGGAGCTCTACAAAGGCACCACCAAGAAGATGAAGATTTCCAGGGAAATCGCTGACGCCAGTGGGAAGACAATTCCAGTGGAGGAGATCCTGACCATCGATGTGAAGCCTGGGTGGAAGAAGGGCACCAAGATCACCTTCCCGGAGAAAGGAAACGAGCAGCCGAACGTGATCCCGGCCGACCTCGTCTTCATCATCGACGAGAAGCCGCACCCGGTGTTCACCCGTGACGGCAACGACCTCGTCGTGACGCAGAAGATACCGCTCGCCGAGGCCCTGACCGGCCACACCGTCCACCTGACTACGCTCGACGGCCGCAGCCTGACGATCCCGATCACCTCCGTCATCAACCCGGGCTACGAGGAGGTCGTCCGCGGCGAGGGCATGCCCATCCCCAAGGACCCCTCCAAGAAGGGCAATCTCAGGGTCAAGTTCGACATCAAGTTCCCGGCGAGGCTCACCGCCGACCAGAAGTCCGGCGTCAAGCGGCTGCTGGGGCAGTAGATCGAGCAACTGCACCGATGTAGTATCAAAGCCTTTTCTTGTGTTGGTGGTGTTGAACTGGTGATCATCCGGCAGCCGCGACGAATTTCTCGTTGAGAGCTTTTTCAGGTCATGTGACACGATGCAAAAAGGCAATGCGGCCTTAGATGTGTGAGATACTGATGAGAACTAGTAGAAACGTTATACACAGCT] [+] EMBL AK067414 [TTTCTTCCCCCCTCTCTCTCCCCCCAGCATCGTACCAAACCACACAACCGCAGCGACGGCAACACGAAGCTCTCCTCTCCGGCGAGAATAGCCAAGAACGCGACGCGACCACACCCAAGAGGCCGAACAGATCGAGCTCAAGAAGGTTTTAGCCCATGGGGATGGATTACTACAAGATCCTGGGCGTCGACAAGGCCGCCAGCGACGACGACCTCAAGAAGGCGTACCGCAAGCTCGCCATGAAGTGGCACCCTGACAAGAACCCCAACAACAAGAAGGAGGCGGAGAACAAGTTCAAGCAGATCTCCGAGGCGTACGAGGTGCTGAGCGACCCGCAGAAGCGAGCGGTGTACGACCAGTACGGCGAGGAGGGGCTCAAGGGGCAGGTCCCGCCGCCGGGCGCCGGCGGGGCCGGCCCGGGAGGCGCGACGTTCTTCTCCACCGGCGGCGACGGGCCCAACGTGTTCCGGTTCAACCCGCGCAACGCGGAGGACATCTTCGCGGAGTTCTTCGGCTCGTCCAGCCCGTTCGGCGGCATGGGCGGTGGCATGGGCGGCGGCATGGGGGGAGGGCCCGGGATGCGGACAGGCGGCACGCGGTTCTCGTCGTCGATCTTCGGGGACGACATCTTCGGCTCGGCGTTCGGCGGCGGCGCCGACGGGCACCACGGGATGCACGGCGGTGGCGCCGGGAGGGCGTTGAAGGCGCCGGCGATCGAGAGGAAGCTGCCGTGCAGCCTGGAGGAGCTCTACAAAGGCACCACCAAGAAGATGAAGATTTCCAGGGAAATCGCTGACGCCAGTGGGAAGACAATTCCAGTGGAGGAGATCCTGACCATCGATGTGAAGCCTGGGTGGAAGAAGGGCACCAAGATCACCTTCCCGGAGAAAGGAAACGAGCAGCCGAACGTGATCCCGGCCGACCTCGTCTTCATCATCGACGAGAAGCCGCACCCGGTGTTCACCCGTGACGGCAACGACCTCGTCGTGACGCAGAAGATACCGCTCGCCGAGGCCCTGACCGGCCACACCGTCCACCTGACTACGCTCGACGGCCGCAGCCTGACGATCCCGATCACCTCCGTCATCAACCCGGGCTACGAGGAGGTCGTCCGCGGCGAGGGCATGCCCATCCCCAAGGACCCCTCCAAGAAGGGCAATCTCAGGGTCAAGTTCGACATCAAGTTCCCGGCGAGGCTCACCGCCGACCAGAAGTCCGGCGTCAAGCGGCTGCTGGGGCAGTAGATCGAGCAACTGCACCGATGTAGTATCAAAGCCTTTTCTTGTGTTGGTGGTGTTGAACTGGTGATCATCCGGCAGCCGCGACGAATTTCTCGTTGAGAGCTTTTTCAGGTCATGTGACACGATGCAAAAAGGCAATGCGGCCTTAGATGTGTGAGATACTGATGAGAACTAGTAGAAACGTTATACACAGCT] [+] EMBL C28613 [ tagACCGCAGCGACGGCAACACGAAGCTCTCCTCTCCGGCGAGAATAGCCAAGAACGCGACG GACCACACCCAAGAGGCCGAACAGATCGAGCTCAAGAAGGTTTTAGCCCATGGGGATGGATTACTACAAGATCCTGGGCGTCGACAAGGCCGCCAGCNACGACGACCTCAAGAAGGCGTACCGCAAGCTCGCCATGAAGTGGCACCCTGACAAGAACCCCAACAACAAGAAGGAGGCGGAGAACAAGTTCAAGCAGATCTCCGAGGCGTACGAGGTGCT ] consensusID : consensus_6420#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 639 fasta sequence [ATCGCTGACGCCAGTGGGAAGACAATTCCAGTGGAGGAGATCCTGACCATCGATGTGAAGCCTGGGTGGAAGAAGGGCACCAAGATCACCTTCCCGGAGAAAGGAAACGAGCAGCCGAACGTGATCCCGGCCGACCTCGTCTTCATCATCGACGAGAAGCCGCACCCGGTGTTCACCCGTGACGGCAACGACCTCGTCGTGACGCAGAAGATACCGCTCGCCGAGGCCCTGACCGGCCACACCGTCCACCTGACTACGCTCGACGGCCGCAGCCTGACGATCCCGATCACCTCCGTCATCAACCCGGGCTACGAGGAGGTCGTCCGCGGCGAGGGCATGCCCATCCCCAAG-GACCCCTCCA-AGAAGGGCAATCTCAGGGTCAAGTTCGACATCAAGTTCCCGGCGAGGCTCACCGCCGACCAGAAGTCCAGCCGCGACGAATTTCTCGTTGAGAGCTTTTTCAGGTCATGTGACACGATGCAAAAAGGCAATGCGGCCTTAGATGTGTGAGATACTGATGAGAACTAGTAGAAACGTTATACACAGCTTTTGTGGTGCATAGAGGAGGAATTCCTTTGTACAATCTCTTTCAGGTTGGTAGTCTGATTCACATTGCTTTGGAGTAAAAAACTAAAAAAA] [+] EMBL CF312959 [ATCGCTGACGCCAGTGGGAAGACAATTCCAGTGGAGGAGATCCTGACCATCGATGTGAAGCCTGGGTGGAAGAAGGGCACCAAGATCACCTTCCCGGAGAAAGGAAACGAGCAGCCGAACGTGATCCCGGCCGACCTCGTCTTCATCATCGACGAGAAGCCGCACCCGGTGTTCACCCGTGACGGCAACGACCTCGTCGTGACGCAGAAGATACCGCTCGCCGAGGCCCTGACCGGCCACACCGTCCACCTGACTACGCTCGACGGCCGCAGCCTGACGATCCCGATCACCTCCGTCATCAACCCGGGCTACGAGGAGGTCGTCCGCGGCGAGGGCATGCCCATCCCCAAG GACCCCTCCA AGAAGGGCAATCTCAGGGTCAAGTTCGACATCAAGTTCCCGGCGAGGCTCACCGCCGACCAGAAGTCCAGCCGCGACGAATTTCTCGTTGAGAGCTTTTTCAGGTCATGTGACACGATGCAAAAAGGCAATGCGGCCTTAGATGTGTGA ] [-] EMBL CF312960 [ CCTGACGATCCCGATCACCTCCGTCATCAACCCGGGCTACGAGGAGGTCGTCCGCGGCGAGGGCATGCCCATCCCCAAGNGACCCCTCCANAGAAGGGCAATCTCAGGGTCAAGTTCGACATCAAGTTCCCGGCGAGGCTCACCGCCGACCAGAAGTCCAGCCGCGACGAATTTCTCGTTGAGAGCTTTTTCAGGTCATGTGACACGATGCAAAAAGGCAATGCGGCCTTAGATGTGTGAGATACTGATGAGAACTAGTAGAAACGTTATACACAGCTTTTGTGGTGCATAGAGGAGGAATTCCTTTGTACAATCTCTTTCAGGTTGGTAGTCTGATTCACATTGCTTTGGAGTAAAAAACTAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6420#0 TTTCTTCCCCCCTCTCTCTCCCCCCAGCATCGTACCAAACCACACAACCGCAGCGACGGC 60 consensus_6420#1 ------------------------------------------------------------ consensus_6420#0 AACACGAAGCTCTCCTCTCCGGCGAGAATAGCCAAGAACGCGACGCGACCACACCCAAGA 120 consensus_6420#1 ------------------------------------------------------------ consensus_6420#0 GGCCGAACAGATCGAGCTCAAGAAGGTTTTAGCCCATGGGGATGGATTACTACAAGATCC 180 consensus_6420#1 ------------------------------------------------------------ consensus_6420#0 TGGGCGTCGACAAGGCCGCCAGCGACGACGACCTCAAGAAGGCGTACCGCAAGCTCGCCA 240 consensus_6420#1 ------------------------------------------------------------ consensus_6420#0 TGAAGTGGCACCCTGACAAGAACCCCAACAACAAGAAGGAGGCGGAGAACAAGTTCAAGC 300 consensus_6420#1 ------------------------------------------------------------ consensus_6420#0 AGATCTCCGAGGCGTACGAGGTGCTGAGCGACCCGCAGAAGCGAGCGGTGTACGACCAGT 360 consensus_6420#1 ------------------------------------------------------------ consensus_6420#0 ACGGCGAGGAGGGGCTCAAGGGGCAGGTCCCGCCGCCGGGCGCCGGCGGGGCCGGCCCGG 420 consensus_6420#1 ------------------------------------------------------------ consensus_6420#0 GAGGCGCGACGTTCTTCTCCACCGGCGGCGACGGGCCCAACGTGTTCCGGTTCAACCCGC 480 consensus_6420#1 ------------------------------------------------------------ consensus_6420#0 GCAACGCGGAGGACATCTTCGCGGAGTTCTTCGGCTCGTCCAGCCCGTTCGGCGGCATGG 540 consensus_6420#1 ------------------------------------------------------------ consensus_6420#0 GCGGTGGCATGGGCGGCGGCATGGGGGGAGGGCCCGGGATGCGGACAGGCGGCACGCGGT 600 consensus_6420#1 ------------------------------------------------------------ consensus_6420#0 TCTCGTCGTCGATCTTCGGGGACGACATCTTCGGCTCGGCGTTCGGCGGCGGCGCCGACG 660 consensus_6420#1 ------------------------------------------------------------ consensus_6420#0 GGCACCACGGGATGCACGGCGGTGGCGCCGGGAGGGCGTTGAAGGCGCCGGCGATCGAGA 720 consensus_6420#1 ------------------------------------------------------------ consensus_6420#0 GGAAGCTGCCGTGCAGCCTGGAGGAGCTCTACAAAGGCACCACCAAGAAGATGAAGATTT 780 consensus_6420#1 ------------------------------------------------------------ consensus_6420#0 CCAGGGAAATCGCTGACGCCAGTGGGAAGACAATTCCAGTGGAGGAGATCCTGACCATCG 840 consensus_6420#1 --------ATCGCTGACGCCAGTGGGAAGACAATTCCAGTGGAGGAGATCCTGACCATCG 52 **************************************************** consensus_6420#0 ATGTGAAGCCTGGGTGGAAGAAGGGCACCAAGATCACCTTCCCGGAGAAAGGAAACGAGC 900 consensus_6420#1 ATGTGAAGCCTGGGTGGAAGAAGGGCACCAAGATCACCTTCCCGGAGAAAGGAAACGAGC 112 ************************************************************ consensus_6420#0 AGCCGAACGTGATCCCGGCCGACCTCGTCTTCATCATCGACGAGAAGCCGCACCCGGTGT 960 consensus_6420#1 AGCCGAACGTGATCCCGGCCGACCTCGTCTTCATCATCGACGAGAAGCCGCACCCGGTGT 172 ************************************************************ consensus_6420#0 TCACCCGTGACGGCAACGACCTCGTCGTGACGCAGAAGATACCGCTCGCCGAGGCCCTGA 1020 consensus_6420#1 TCACCCGTGACGGCAACGACCTCGTCGTGACGCAGAAGATACCGCTCGCCGAGGCCCTGA 232 ************************************************************ consensus_6420#0 CCGGCCACACCGTCCACCTGACTACGCTCGACGGCCGCAGCCTGACGATCCCGATCACCT 1080 consensus_6420#1 CCGGCCACACCGTCCACCTGACTACGCTCGACGGCCGCAGCCTGACGATCCCGATCACCT 292 ************************************************************ consensus_6420#0 CCGTCATCAACCCGGGCTACGAGGAGGTCGTCCGCGGCGAGGGCATGCCCATCCCCAAGG 1140 consensus_6420#1 CCGTCATCAACCCGGGCTACGAGGAGGTCGTCCGCGGCGAGGGCATGCCCATCCCCAAGG 352 ************************************************************ consensus_6420#0 ACCCCTCCAAGAAGGGCAATCTCAGGGTCAAGTTCGACATCAAGTTCCCGGCGAGGCTCA 1200 consensus_6420#1 ACCCCTCCAAGAAGGGCAATCTCAGGGTCAAGTTCGACATCAAGTTCCCGGCGAGGCTCA 412 ************************************************************ consensus_6420#0 CCGCCGACCAGAAGTCCGGCGTCAAGCGGCTGCTGGGGCAGTAGATCGAGCAACTGCACC 1260 consensus_6420#1 CCGCCGACCAGAAGTCCAGCCGCGACGAATTTCTCGTTGAG-AGCTTTTTCAGGTCATGT 471 ***************** ** * * * ** * ** ** * ** * consensus_6420#0 GATGTAGTATCAAAGCCTTTTCTTGTGTTGGTGGTGTTGAA--CTGGTGATCATCCGGCA 1318 consensus_6420#1 GACACGATGCAAAAAGGCAATGCGGCCTTAGATGTGTGAGATACTGATGAG-AACTAGTA 530 ** * *** * * ** * **** * *** *** * * * * consensus_6420#0 GCCGCGACGAATTTCTCGTTGAGAGCTTTTTCAGGTCATGTGACACGATGCAAAAAGGCA 1378 consensus_6420#1 GAAACGTTATACACAGCTTTTGTGGTGCATAGAGG--AGGAATTCCTTTGTACAATCTCT 588 * ** * * ** * * *** * * * ** * ** * consensus_6420#0 ATGCGGCCTTAGATGTGTGAGATACTGATGAGAACTAGTAGAAACGTTATACACAGCT 1436 consensus_6420#1 TTCAGGTTGGTAGTCTGATTCACATTGCTTTGGAGTA--AAAAACTAAAAAAA----- 639 * ** * ** * * ** * * * ** * **** * * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||