cluster # 6429

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Oryza sativa
cluster # 6429 cluster # 6429 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6429#0 length = 605 sequences # 2

consensus_6429#1 length = 290 sequences # 2

consensusID : consensus_6429#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 605
fasta sequence

                              [TCCACTCGCTTCCTCTCTCTCTCTCTCTCCATTACTTCCCTCTCTCTCCCTCGCTTCTCTCCCATGGCCAGCGGCTGGCCGGCGGAGAC-GCANGCGGCGGCCACG-CCTCCNCTNCGCCAGATCCGGCGGGCATCTGACCGGCGGAGGAGGCGACGGCCACGGCCAGCGGATGGGGAGGCGGCGGAAGAGATGCGGCGGTGGNAGGNGGAAGAGAGGGNGATATNACGGCGGNGTTGGTTGNAAGGGAGGGGGATGCGGCGGCGAAGGGCGAAAGGGAGGGGGATGCGGTGGCGGCGGGCGGAAGGGATGCGGCGGCAGTGGGCAGAAGGGAGGGGGATGTGGCGGCTACGGGCAGAAGGGAATGGGATGCAGCGGCGAAGGGTGGAAGGAGGGGGATGCGGCGGCGGTGGGCCGAAGGGAGGAAGGATGTGGTGGCGGCCGGTGGCAAGAGGGAAGTCGCTGGAACCACGGATCGATCTCTTCCCTCCCCCNTCTGGTCCCTCCTTCTTGGGGTTTGGGATAATTCCCTCTGGGGATTGGTGAATGGGAACTAAATGTGGTCAAGGATTTGAAGGAATTTAATTCATGGGGTCATGGAAAAAAAA]

[+] EMBL OS1375A              [TCCACTCGCTTCCTCTCTCTCTCTCTCTCCATTACTTCCCTCTCTCTCCCTCGCTTCTCTCCCATGGCCAGCGGCTGGCCGGCGGAGAC GCANGCGGCGGCCACG CCTCCNCTNCGCCAGATCCGGCGGGCATCTGACCGGCGGAGGAGGCGACGGCCACGGCCAGCGGATGGGGAGGCGGCGGAAGAGATGCGGCGGTGGNAGGNGGAAGAGAGGGNGATATNACGGCGGNGTTGGTTGNAAGG                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CA756332             [           CCTCTCTCTCTCTCTCTCCATTACTTCCCTCTCTCTCCCTCGCTTCTCTCCCATGGCCAGCGGCTGGCCGGCGGAGACGGCA GCGGCGGCCACGCCCTCCCCTCCGCCAGATCCGGCGGGCATCTGACCGGCGGAGGAGGCGACGGCCACGGCCAGCGGATGGGGAGGCGGCGGAAGAGATGCGGCGGTGGCAGGCGGAAGAGAGGGGGATATGACGGCGGCGGTGGGCGGAAGGGAGGGGGATGCGGCGGCGAAGGGCGAAAGGGAGGGGGATGCGGTGGCGGCGGGCGGAAGGGATGCGGCGGCAGTGGGCAGAAGGGAGGGGGATGTGGCGGCTACGGGCAGAAGGGAATGGGATGCAGCGGCGAAGGGTGGAAGGAGGGGGATGCGGCGGCGGTGGGCCGAAGGGAGGAAGGATGTGGTGGCGGCCGGTGGCAAGAGGGAAGTCGCTGGAACCACGGATCGATCTCTTCCCTCCCCCNTCTGGTCCCTCCTTCTTGGGGTTTGGGATAATTCCCTCTGGGGATTGGTGAATGGGAACTAAATGTGGTCAAGGATTTGAAGGAATTTAATTCATGGGGTCATGGAAAAAAAA]




>consensus_6429#0
TCCACTCGCTTCCTCTCTCTCTCTCTCTCCATTACTTCCCTCTCTCTCCCTCGCTTCTCT
CCCATGGCCAGCGGCTGGCCGGCGGAGACGCANGCGGCGGCCACGCCTCCNCTNCGCCAG
ATCCGGCGGGCATCTGACCGGCGGAGGAGGCGACGGCCACGGCCAGCGGATGGGGAGGCG
GCGGAAGAGATGCGGCGGTGGNAGGNGGAAGAGAGGGNGATATNACGGCGGNGTTGGTTG
NAAGGGAGGGGGATGCGGCGGCGAAGGGCGAAAGGGAGGGGGATGCGGTGGCGGCGGGCG
GAAGGGATGCGGCGGCAGTGGGCAGAAGGGAGGGGGATGTGGCGGCTACGGGCAGAAGGG
AATGGGATGCAGCGGCGAAGGGTGGAAGGAGGGGGATGCGGCGGCGGTGGGCCGAAGGGA
GGAAGGATGTGGTGGCGGCCGGTGGCAAGAGGGAAGTCGCTGGAACCACGGATCGATCTC
TTCCCTCCCCCNTCTGGTCCCTCCTTCTTGGGGTTTGGGATAATTCCCTCTGGGGATTGG
TGAATGGGAACTAAATGTGGTCAAGGATTTGAAGGAATTTAATTCATGGGGTCATGGAAA
AAAAA

consensusID : consensus_6429#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 290
fasta sequence

                              [GCGGCGGGCGGAAGGGATGCGGCGGCAGTGGGCAGAAGGGAGGGGGATGTGGCGGCTACGGGCAGAAGGGAATGGGATGCAGCGGCGAAGGTTGGAAANGAGGGGGATGCGGCGGCGGTGGGCGGAAGGGAGGGAGGATGTGGTGGCGGCGGGTGGCAGGAGGGAGTCGGCTGGAGGCCACGGATCGATCTCTTCCCCTCCCCTTCTTGTCCCTCCTTCTTTGTG-------TTATTTCCTCTGTGATTTGTTGAATGTGATCTAGATGTGTTCAANGATTTGATGCAATTTAANAA]

[+] EMBL AU058287             [GCGGCGGGCGGAAGGGATGCGGCGGCAGTGGGCAGAAGGGAGGGGGATGTGGCGGCTACGGGCAGAAGGGAATGGGATGCAGCGGCGAAGGTTGGAAANGAGGGGGATGCGGCGGCGGTGGGCGGAAGGGAGGGAGGATGTGGTGGCGGCGGGTGGCAGGAGGGAGTCGGCTGGAGGCCACGGATCGATCTCTTCCCCTCCCCTTCTTGTCCCTCCTTCTTTGTG       TTATTTCCTCTGTGATTTGTTGAATGTGATCTAGATGTGTTCAANGATTTGATGCAATTTAANAA]
[+] EMBL C98275               [                   CGGCGGCAGTGGGCAGAAGGGAGGGGGNTGTGGCGGCTACGGGCAGAAGGGAATGGGATGCAGCGGCGAAGGTTGGAAAGGAGGGGGATGCGGCGGCGGTGGGCGGAAGGGAGGGAGGATGTGGTGGCGGCGGGTGGCAGGAGGGAGTCGGCTGGAGGCCACGGATCGATCTCTTCCCCTCCCCTTCTTGTCCCTCCTTCTTTGTGTTTTGTATTATTTCCTCTGTGATTTGTTGAATGTGATCTAGATGTGTTCAAGGATTTGATGCAAaaaaaaaa]




>consensus_6429#1
GCGGCGGGCGGAAGGGATGCGGCGGCAGTGGGCAGAAGGGAGGGGGATGTGGCGGCTACG
GGCAGAAGGGAATGGGATGCAGCGGCGAAGGTTGGAAANGAGGGGGATGCGGCGGCGGTG
GGCGGAAGGGAGGGAGGATGTGGTGGCGGCGGGTGGCAGGAGGGAGTCGGCTGGAGGCCA
CGGATCGATCTCTTCCCCTCCCCTTCTTGTCCCTCCTTCTTTGTGTTATTTCCTCTGTGA
TTTGTTGAATGTGATCTAGATGTGTTCAANGATTTGATGCAATTTAANAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6429#0      TCCACTCGCTTCCTCTCTCTCTCTCTCTCCATTACTTCCCTCTCTCTCCCTCGCTTCTCT 60
consensus_6429#1      ------------------------------------------------------------
                                                                                  

consensus_6429#0      CCCATGGCCAGCGGCTGGCCGGCGGAGACGCANGCGGCGGCCACGCCTCCNCTNCGCCAG 120
consensus_6429#1      ------------------------------------------------------------
                                                                                  

consensus_6429#0      ATCCGGCGGGCATCTGACCGGCGGAGGAGGCGACGGCCACGGCCAGCGGATGGGGAGGCG 180
consensus_6429#1      ------------------------------------------------------------
                                                                                  

consensus_6429#0      GCGGAAGAGATGCGGCGGTGGNAGGNGGAAGAGAGGGNGATATNACGGCGGNGTTGGTTG 240
consensus_6429#1      ------------------------------------------------------------
                                                                                  

consensus_6429#0      NAAGGGAGGGGGATGCGGCGGCGAAGGGCGAAAGGGAGGGGGATGCGGTGGCGGCGGGCG 300
consensus_6429#1      --------------------------------------------------GCGGCGGGCG 10
                                                                        **********

consensus_6429#0      GAAGGGATGCGGCGGCAGTGGGCAGAAGGGAGGGGGATGTGGCGGCTACGGGCAGAAGGG 360
consensus_6429#1      GAAGGGATGCGGCGGCAGTGGGCAGAAGGGAGGGGGATGTGGCGGCTACGGGCAGAAGGG 70
                      ************************************************************

consensus_6429#0      AATGGGATGCAGCGGCGAAGGGTGGAA-GGAGGGGGATGCGGCGGCGGTGGGCCGAAGGG 419
consensus_6429#1      AATGGGATGCAGCGGCGAAGGTTGGAAANGAGGGGGATGCGGCGGCGGTGGGCGGAAGGG 130
                      ********************* *****  ************************ ******

consensus_6429#0      AGGAAGGATGTGGTGGCGGCCGGTGGCAAGAGGGAAGTCGCTGGAA-CCACGGATCGATC 478
consensus_6429#1      AGGGAGGATGTGGTGGCGGCGGGTGGCAGGAGGGAGTCGGCTGGAGGCCACGGATCGATC 190
                      *** **************** ******* ******    ******  *************

consensus_6429#0      TCTTCCCTCCCCCNTCTGGTCCCTCCTTCTTGGGGTTTGGGATAATTCCCTCTGGGGATT 538
consensus_6429#1      TCTTCCCCTCCCCTTCTTGTCCCTCCTTCTTTGTGTT-------ATTTCCTCTGTGATTT 243
                      *******  **** *** ************* * ***       *** ****** *  **

consensus_6429#0      GGTGAATGGGAACTAAATGTGGTCAAGGATTTGAAGGAATTTAATTCATGGGGTCATGGA 598
consensus_6429#1      GTTGAATGTGATCTAGATGTGTTCAANGATTTGATGCAATTTAANAA------------- 290
                      * ****** ** *** ***** **** ******* * *******                

consensus_6429#0      AAAAAAA 605
consensus_6429#1      -------