These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6429#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 605 fasta sequence [TCCACTCGCTTCCTCTCTCTCTCTCTCTCCATTACTTCCCTCTCTCTCCCTCGCTTCTCTCCCATGGCCAGCGGCTGGCCGGCGGAGAC-GCANGCGGCGGCCACG-CCTCCNCTNCGCCAGATCCGGCGGGCATCTGACCGGCGGAGGAGGCGACGGCCACGGCCAGCGGATGGGGAGGCGGCGGAAGAGATGCGGCGGTGGNAGGNGGAAGAGAGGGNGATATNACGGCGGNGTTGGTTGNAAGGGAGGGGGATGCGGCGGCGAAGGGCGAAAGGGAGGGGGATGCGGTGGCGGCGGGCGGAAGGGATGCGGCGGCAGTGGGCAGAAGGGAGGGGGATGTGGCGGCTACGGGCAGAAGGGAATGGGATGCAGCGGCGAAGGGTGGAAGGAGGGGGATGCGGCGGCGGTGGGCCGAAGGGAGGAAGGATGTGGTGGCGGCCGGTGGCAAGAGGGAAGTCGCTGGAACCACGGATCGATCTCTTCCCTCCCCCNTCTGGTCCCTCCTTCTTGGGGTTTGGGATAATTCCCTCTGGGGATTGGTGAATGGGAACTAAATGTGGTCAAGGATTTGAAGGAATTTAATTCATGGGGTCATGGAAAAAAAA] [+] EMBL OS1375A [TCCACTCGCTTCCTCTCTCTCTCTCTCTCCATTACTTCCCTCTCTCTCCCTCGCTTCTCTCCCATGGCCAGCGGCTGGCCGGCGGAGAC GCANGCGGCGGCCACG CCTCCNCTNCGCCAGATCCGGCGGGCATCTGACCGGCGGAGGAGGCGACGGCCACGGCCAGCGGATGGGGAGGCGGCGGAAGAGATGCGGCGGTGGNAGGNGGAAGAGAGGGNGATATNACGGCGGNGTTGGTTGNAAGG ] [+] EMBL CA756332 [ CCTCTCTCTCTCTCTCTCCATTACTTCCCTCTCTCTCCCTCGCTTCTCTCCCATGGCCAGCGGCTGGCCGGCGGAGACGGCA GCGGCGGCCACGCCCTCCCCTCCGCCAGATCCGGCGGGCATCTGACCGGCGGAGGAGGCGACGGCCACGGCCAGCGGATGGGGAGGCGGCGGAAGAGATGCGGCGGTGGCAGGCGGAAGAGAGGGGGATATGACGGCGGCGGTGGGCGGAAGGGAGGGGGATGCGGCGGCGAAGGGCGAAAGGGAGGGGGATGCGGTGGCGGCGGGCGGAAGGGATGCGGCGGCAGTGGGCAGAAGGGAGGGGGATGTGGCGGCTACGGGCAGAAGGGAATGGGATGCAGCGGCGAAGGGTGGAAGGAGGGGGATGCGGCGGCGGTGGGCCGAAGGGAGGAAGGATGTGGTGGCGGCCGGTGGCAAGAGGGAAGTCGCTGGAACCACGGATCGATCTCTTCCCTCCCCCNTCTGGTCCCTCCTTCTTGGGGTTTGGGATAATTCCCTCTGGGGATTGGTGAATGGGAACTAAATGTGGTCAAGGATTTGAAGGAATTTAATTCATGGGGTCATGGAAAAAAAA] consensusID : consensus_6429#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 290 fasta sequence [GCGGCGGGCGGAAGGGATGCGGCGGCAGTGGGCAGAAGGGAGGGGGATGTGGCGGCTACGGGCAGAAGGGAATGGGATGCAGCGGCGAAGGTTGGAAANGAGGGGGATGCGGCGGCGGTGGGCGGAAGGGAGGGAGGATGTGGTGGCGGCGGGTGGCAGGAGGGAGTCGGCTGGAGGCCACGGATCGATCTCTTCCCCTCCCCTTCTTGTCCCTCCTTCTTTGTG-------TTATTTCCTCTGTGATTTGTTGAATGTGATCTAGATGTGTTCAANGATTTGATGCAATTTAANAA] [+] EMBL AU058287 [GCGGCGGGCGGAAGGGATGCGGCGGCAGTGGGCAGAAGGGAGGGGGATGTGGCGGCTACGGGCAGAAGGGAATGGGATGCAGCGGCGAAGGTTGGAAANGAGGGGGATGCGGCGGCGGTGGGCGGAAGGGAGGGAGGATGTGGTGGCGGCGGGTGGCAGGAGGGAGTCGGCTGGAGGCCACGGATCGATCTCTTCCCCTCCCCTTCTTGTCCCTCCTTCTTTGTG TTATTTCCTCTGTGATTTGTTGAATGTGATCTAGATGTGTTCAANGATTTGATGCAATTTAANAA] [+] EMBL C98275 [ CGGCGGCAGTGGGCAGAAGGGAGGGGGNTGTGGCGGCTACGGGCAGAAGGGAATGGGATGCAGCGGCGAAGGTTGGAAAGGAGGGGGATGCGGCGGCGGTGGGCGGAAGGGAGGGAGGATGTGGTGGCGGCGGGTGGCAGGAGGGAGTCGGCTGGAGGCCACGGATCGATCTCTTCCCCTCCCCTTCTTGTCCCTCCTTCTTTGTGTTTTGTATTATTTCCTCTGTGATTTGTTGAATGTGATCTAGATGTGTTCAAGGATTTGATGCAAaaaaaaaa] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6429#0 TCCACTCGCTTCCTCTCTCTCTCTCTCTCCATTACTTCCCTCTCTCTCCCTCGCTTCTCT 60 consensus_6429#1 ------------------------------------------------------------ consensus_6429#0 CCCATGGCCAGCGGCTGGCCGGCGGAGACGCANGCGGCGGCCACGCCTCCNCTNCGCCAG 120 consensus_6429#1 ------------------------------------------------------------ consensus_6429#0 ATCCGGCGGGCATCTGACCGGCGGAGGAGGCGACGGCCACGGCCAGCGGATGGGGAGGCG 180 consensus_6429#1 ------------------------------------------------------------ consensus_6429#0 GCGGAAGAGATGCGGCGGTGGNAGGNGGAAGAGAGGGNGATATNACGGCGGNGTTGGTTG 240 consensus_6429#1 ------------------------------------------------------------ consensus_6429#0 NAAGGGAGGGGGATGCGGCGGCGAAGGGCGAAAGGGAGGGGGATGCGGTGGCGGCGGGCG 300 consensus_6429#1 --------------------------------------------------GCGGCGGGCG 10 ********** consensus_6429#0 GAAGGGATGCGGCGGCAGTGGGCAGAAGGGAGGGGGATGTGGCGGCTACGGGCAGAAGGG 360 consensus_6429#1 GAAGGGATGCGGCGGCAGTGGGCAGAAGGGAGGGGGATGTGGCGGCTACGGGCAGAAGGG 70 ************************************************************ consensus_6429#0 AATGGGATGCAGCGGCGAAGGGTGGAA-GGAGGGGGATGCGGCGGCGGTGGGCCGAAGGG 419 consensus_6429#1 AATGGGATGCAGCGGCGAAGGTTGGAAANGAGGGGGATGCGGCGGCGGTGGGCGGAAGGG 130 ********************* ***** ************************ ****** consensus_6429#0 AGGAAGGATGTGGTGGCGGCCGGTGGCAAGAGGGAAGTCGCTGGAA-CCACGGATCGATC 478 consensus_6429#1 AGGGAGGATGTGGTGGCGGCGGGTGGCAGGAGGGAGTCGGCTGGAGGCCACGGATCGATC 190 *** **************** ******* ****** ****** ************* consensus_6429#0 TCTTCCCTCCCCCNTCTGGTCCCTCCTTCTTGGGGTTTGGGATAATTCCCTCTGGGGATT 538 consensus_6429#1 TCTTCCCCTCCCCTTCTTGTCCCTCCTTCTTTGTGTT-------ATTTCCTCTGTGATTT 243 ******* **** *** ************* * *** *** ****** * ** consensus_6429#0 GGTGAATGGGAACTAAATGTGGTCAAGGATTTGAAGGAATTTAATTCATGGGGTCATGGA 598 consensus_6429#1 GTTGAATGTGATCTAGATGTGTTCAANGATTTGATGCAATTTAANAA------------- 290 * ****** ** *** ***** **** ******* * ******* consensus_6429#0 AAAAAAA 605 consensus_6429#1 ------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||