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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6436#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1266 fasta sequence
[CGAACGCGCGACGCCGCCGCCAGAGTCTCCGGCTCGCCGCACTTCCCGCCTCGCCGTCGCCGTCGCCGTCGCCGTCGCCCCTCCCGCCGGTAGGAGAAGGTAGCTCGGCGCCTCGGTGACTTGGCGTCGCGCTCTGCGCCCCTGCCGCTCTCGGTCGGTAGGCTCTCGTCTCACGCGGCCCCTTCCACCGCTTCACGCCGCCGGCAGTGAGCAGTCAGCTGCGAGGACCCGCTCCACCGAGAGAGCTAACGCCGCCGCCGCCCGCGGTGCGCGTAGTGCTCGAGACTGCTGCTGGTGTTGATAGTGTTATCTGGGATTTTTAGTCTGAGGATGGGGAGGGCGAAGAGCAAGGGCCCTAAGTTCGCCGCCGTCAAGAAGATCATCACCAAGAAGACCATCCAGAAGTACAAGGAGGATGTGTTGAACCCCAAGAAGAAGGATAACGAGAAGGAGAAGCTCGGGCGGAATGTGCCTCAGGTCTCTTCGGCGCTGTTCTTCAGCTACAACACAGCGCTCGGGCCGCCATACCGGGTTATTGTGGATACAAACTTCATCAATTTCTCCATCCAGAACAAGTTGGATTTGGAGAAAGGAATGATGGACTGCCTTTATGCAAAATGCACACCATGTATCACGGATTGTGTTATGGCGGAGCTTGAAAAGCTGGGACAAAAGTATCGTGTAGCATTGAGAATTGCAAAGGACCCTAGGTTCCAGAGATTAGCATGCACACACAAGGGAACTTATGCTGATGACTGTATCGTAGAGAGGGTTACTCAGCACAAGTGCTACATCGTCGCAACATGTGATAGAGATTTGAAAAGGAGGATAAGAAAGGTTCCTGGTGTTCCAATCATGTATATCACTCGGCACAGGTACTCGATAGAACGACTCCCTGAAGCTACAATCGGAGGAGCACCAAGAATCTGATCGGCACGGACATAAAAAATGGGGAATGTTTCACTGTTCAACTTGCTGGCCAAGAATACTGCTGTAGTAGCCTTTTGAAACAAATGCTGTAGTGAGCTGTGCTAATTGTAACCACTTCAAAGTTTTGTACCAACCTCATGAGGATATTACTGTTATCGAGATCCAAGAGATGTGTTTGCTTCCTTCTTCGTGTGTCTATGCCATTTGAATGAGGATATTACTGGAAGGAAGCAAAGTTTTGAATTTAACTTGTTATGAAAAAAAAGGCGCTATTTTTTGCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACTGTCATGACGTAGCGTATC]
[+] EMBL AK101378 [CGAACGCGCGACGCCGCCGCCAGAGTCTCCGGCTCGCCGCACTTCCCGCCTCGCCGTCGCCGTCGCCGTCGCCGTCGCCCCTCCCGCCGGTAGGAGAAGGTAGCTCGGCGCCTCGGTGACTTGGCGTCGCGCTCTGCGCCCCTGCCGCTCTCGGTCGGTAGGCTCTCGTCTCACGCGGCCCCTTCCACCGCTTCACGCCGCCGGCAGTGAGCAGTCAGCTGCGAGGACCCGCTCCACCGAGAGAGCTAACGCCGCCGCCGCCCGCGGTGCGCGTAGTGCTCGAGACTGCTGCTGGTGTTGATAGTGTTATCTGGGATTTTTAGTCTGAGGATGGGGAGGGCGAAGAGCAAGGGCCCTAAGTTCGCCGCCGTCAAGAAGATCATCACCAAGAAGACCATCCAGAAGTACAAGGAGGATGTGTTGAACCCCAAGAAGAAGGATAACGAGAAGGAGAAGCTCGGGCGGAATGTGCCTCAGGTCTCTTCGGCGCTGTTCTTCAGCTACAACACAGCGCTCGGGCCGCCATACCGGGTTATTGTGGATACAAACTTCATCAATTTCTCCATCCAGAACAAGTTGGATTTGGAGAAAGGAATGATGGACTGCCTTTATGCAAAATGCACACCATGTATCACGGATTGTGTTATGGCGGAGCTTGAAAAGCTGGGACAAAAGTATCGTGTAGCATTGAGAATTGCAAAGGACCCTAGGTTCCAGAGATTAGCATGCACACACAAGGGAACTTATGCTGATGACTGTATCGTAGAGAGGGTTACTCAGCACAAGTGCTACATCGTCGCAACATGTGATAGAGATTTGAAAAGGAGGATAAGAAAGGTTCCTGGTGTTCCAATCATGTATATCACTCGGCACAGGTACTCGATAGAACGACTCCCTGAAGCTACAATCGGAGGAGCACCAAGAATCTGATCGGCACGGACATAAAAAATGGGGAATGTTTCACTGTTCAACTTGCTGGCCAAGAATACTGCTGTAGTAGCCTTTTGAAACAAATGCTGTAGTGAGCTGTGCTAATTGTAACCACTTCAAAGTTTTGTACCAACCTCATGAGGATATTACTGTTATCGAGATCCAAGAGATGTGTTTGCTTCCTTCTTCGTGTGTCTATGCCATTTGAATGAGGATATTACTGGAAGGAAGCAAAGTTTTGAATTT ]
[+] EMBL AK059986 [ GAACGCGCGACGCCGCCGCCAGAGTCTCCGGCTCGCCGCACTTCCCGCCTCGCCGTCGCCGTCGCCGTCGCCGTCGCCCCTCCCGCCGGTAGGAGAAGGTAGCTCGGCGCCTCGGTGACTTGGCGTCGCGCTCTGCGCCCCTGCCGCTCTCGGTCGGTAGGCTCTCGTCTCACGCGGCCCCTTCCACCGCTTCACGCCGCCGGCAGTGAGCAGTCAGCTGCGAGGACCCGCTCCACCGAGAGAGCTAACGCCGCCGCCGCCCGCGGTGCGCGTAGTGCTCGAGACTGCTGCTGGTGTTGATAGTGTTATCTGGGATTTTTAGTCTGAGGATGGGGAGGGCGAAGAGCAAGGGCCCTAAGTTCGCCGCCGTCAAGAAGATCATCACCAAGAAGACCATCCAGAAGTACAAGGAGGATGTGTTGAACCCCAAGAAGAAGGATAACGAGAAGGAGAAGCTCGGGCGGAATGTGCCTCAGGTCTCTTCGGCGCTGTTCTTCAGCTACAACACAGCGCTCGGGCCGCCATACCGGGTTATTGTGGATACAAACTTCATCAATTTCTCCATCCAGAACAAGTTGGATTTGGAGAAAGGAATGATGGACTGCCTTTATGCAAAATGCACACCATGTATCACGGATTGTGTTATGGCGGAGCTTGAAAAGCTGGGACAAAAGTATCGTGTAGCATTGAGAATTGCAAAGGACCCTAGGTTCCAGAGATTAGCATGCACACACAAGGGAACTTATGCTGATGACTGTATCGTAGAGAGGGTTACTCAGCACAAGTGCTACATCGTCGCAACATGTGATAGAGATTTGAAAAGGAGGATAAGAAAGGTTCCTGGTGTTCCAATCATGTATATCACTCGGCACAGGTACTCGATAGAACGACTCCCTGAAGCTACAATCGGAGGAGCACCAAGAATCTGATCGGCACGGACATAAAAAATGGGGAATGTTTCACTGTTCAACTTGCTGGCCAAGAATACTGCTGTAGTAGCCTTTTGAAACAAATGCTGTAGTGAGCTGTGCTAATTGTAACCACTTCAAAGTTTTGTACCAACCTCATGAGGATATTACTGTTATCGAGATCCAAGAGATGT ]
[-] EMBL CF319148 [ ctgAAGGAGTATAAGAAAGGTTCCTGGTGTTCCAATCATGTATATCACTCGGCACAGGTACTCGATAGAACGACTCCCTGAAGCTACAATTGGAGGAGCACCAAGAATTTGATCGGCACGGACATAAAAAATGGGGAATGTTTCACTGTTCAACTTGCTGGCCAAGAATACTGCTGTAGTAGCCTTTTGAAACAAATGCTGTAGTGAGCTGTGGTAATTGTAACCACTTCAAAGTTTTGTACCAACCTCATGAGGATATTACTGTTATCGAGATCCAAAAAATGTGTTTGCTTCCTTTTTCGGGGGTTTATGCCATTTGAATGAGGATATTACTGGAAGGAAGCAAAGTTTTGAATTTAACTTGTTATGAAAAAAAAGGCGCTATTTTTTGCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACTGTCATGACGTAGCGTATC]
consensusID : consensus_6436#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 420 fasta sequence
[GACACTGCATGGACTGAAGGAGTATAAGAAAGGTTCCTGGTGTTCCAATCATGTATATCACTCGGCACAGGTACTCGATAGAACGACTCCCTGAAGCTACAATCGGAGGAGCACCAAGAATCTGATCGGCACGGACATAAAAAATGGGGAATGTTTCACTGTTCAACTTGCTGGCCAAGAATACTGCTGTAGTAGCCTTTTGAAACAAATGCTGTAGTGAGCTGTGCTAATTGTAACCACTTCAAAGTTTTGTACCAACCTCATGAGGATATTACTGTTATCGAGATCCAAGAGATGTGTTTGCTTCCTTCTTCGTGTGTCTATGCCATTTGAATGAGGATATTACTGGAAGGAAGCAAAGTTTTGAATTTACTTGTTATGAAAGAGAAGGCGCTATCTTTTGCTGAAAAAAAAAAAAAA]
[+] EMBL CF319147 [GACACTGCATGGACTGAAGGAGTATAAGAAAGGTTCCTGGTGTTCCAATCATGTATATCACTCGGCACAGGTACTCGATAGAACGACTCCCTGAAGCTACAATCGGAGGAGCACCAAGAATCTGATCGGCACGGACATAAAAAATGGGGAATGTTTCACTGTTCAACTTGCTGGCCAAGAATACTGCTGTAGTAGCCTTTTGAAACAAATGCTGTAGTGAGCTGTGCTAATTGTAACCACTTCAAAGTTTTGTACCAACCTCATGAGGATATTACTGTTATCGAGATCCAAGAGATGTGTTTGCTTCCTTCTTCGTGTGTCTATGCCATTTGAATGAGGATATTACTGGAAGGAAGCAAAGTTTTGAATTTACTTGTTATGAAAGAGAAGGCGCTATCTTTTGCTGAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6436#0 CGAACGCGCGACGCCGCCGCCAGAGTCTCCGGCTCGCCGCACTTCCCGCCTCGCCGTCGC 60
consensus_6436#1 ------------------------------------------------------------
consensus_6436#0 CGTCGCCGTCGCCGTCGCCCCTCCCGCCGGTAGGAGAAGGTAGCTCGGCGCCTCGGTGAC 120
consensus_6436#1 ------------------------------------------------------------
consensus_6436#0 TTGGCGTCGCGCTCTGCGCCCCTGCCGCTCTCGGTCGGTAGGCTCTCGTCTCACGCGGCC 180
consensus_6436#1 ------------------------------------------------------------
consensus_6436#0 CCTTCCACCGCTTCACGCCGCCGGCAGTGAGCAGTCAGCTGCGAGGACCCGCTCCACCGA 240
consensus_6436#1 ------------------------------------------------------------
consensus_6436#0 GAGAGCTAACGCCGCCGCCGCCCGCGGTGCGCGTAGTGCTCGAGACTGCTGCTGGTGTTG 300
consensus_6436#1 ------------------------------------------------------------
consensus_6436#0 ATAGTGTTATCTGGGATTTTTAGTCTGAGGATGGGGAGGGCGAAGAGCAAGGGCCCTAAG 360
consensus_6436#1 ------------------------------------------------------------
consensus_6436#0 TTCGCCGCCGTCAAGAAGATCATCACCAAGAAGACCATCCAGAAGTACAAGGAGGATGTG 420
consensus_6436#1 ------------------------------------------------------------
consensus_6436#0 TTGAACCCCAAGAAGAAGGATAACGAGAAGGAGAAGCTCGGGCGGAATGTGCCTCAGGTC 480
consensus_6436#1 ------------------------------------------------------------
consensus_6436#0 TCTTCGGCGCTGTTCTTCAGCTACAACACAGCGCTCGGGCCGCCATACCGGGTTATTGTG 540
consensus_6436#1 ------------------------------------------------------------
consensus_6436#0 GATACAAACTTCATCAATTTCTCCATCCAGAACAAGTTGGATTTGGAGAAAGGAATGATG 600
consensus_6436#1 ------------------------------------------------------------
consensus_6436#0 GACTGCCTTTATGCAAAATGCACACCATGTATCACGGATTGTGTTATGGCGGAGCTTGAA 660
consensus_6436#1 ------------------------------------------------------------
consensus_6436#0 AAGCTGGGACAAAAGTATCGTGTAGCATTGAGAATTGCAAAGGACCCTAGGTTCCAGAGA 720
consensus_6436#1 ------------------------------------------------------------
consensus_6436#0 TTAGCATGCACACACAAGGGAACTTATGCTGATGACTGTATCGTAGAGAGGGTTACTCAG 780
consensus_6436#1 ------------------------------------------------------------
consensus_6436#0 CACAAGTGCTACATCGTCGCAACATGTGATAGAGATTTGAAAAGGAGGATAAGAAAGGTT 840
consensus_6436#1 ----------------------GACACTGCATGGACT---GAAGGAGTATAAGAAAGGTT 35
* * ** * ****** ************
consensus_6436#0 CCTGGTGTTCCAATCATGTATATCACTCGGCACAGGTACTCGATAGAACGACTCCCTGAA 900
consensus_6436#1 CCTGGTGTTCCAATCATGTATATCACTCGGCACAGGTACTCGATAGAACGACTCCCTGAA 95
************************************************************
consensus_6436#0 GCTACAATCGGAGGAGCACCAAGAATCTGATCGGCACGGACATAAAAAATGGGGAATGTT 960
consensus_6436#1 GCTACAATCGGAGGAGCACCAAGAATCTGATCGGCACGGACATAAAAAATGGGGAATGTT 155
************************************************************
consensus_6436#0 TCACTGTTCAACTTGCTGGCCAAGAATACTGCTGTAGTAGCCTTTTGAAACAAATGCTGT 1020
consensus_6436#1 TCACTGTTCAACTTGCTGGCCAAGAATACTGCTGTAGTAGCCTTTTGAAACAAATGCTGT 215
************************************************************
consensus_6436#0 AGTGAGCTGTGCTAATTGTAACCACTTCAAAGTTTTGTACCAACCTCATGAGGATATTAC 1080
consensus_6436#1 AGTGAGCTGTGCTAATTGTAACCACTTCAAAGTTTTGTACCAACCTCATGAGGATATTAC 275
************************************************************
consensus_6436#0 TGTTATCGAGATCCAAGAGATGTGTTTGCTTCCTTCTTCGTGTGTCTATGCCATTTGAAT 1140
consensus_6436#1 TGTTATCGAGATCCAAGAGATGTGTTTGCTTCCTTCTTCGTGTGTCTATGCCATTTGAAT 335
************************************************************
consensus_6436#0 GAGGATATTACTGGAAGGAAGCAAAGTTTTGAATTTAACTTGTTATGAAAAAAAAGGCGC 1200
consensus_6436#1 GAGGATATTACTGGAAGGAAGCAAAGTTTTGAATTTA-CTTGTTATGAAAGAGAAGGCGC 394
************************************* ************ * *******
consensus_6436#0 TATTTTTTGCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACTGTCATGACGTAG 1260
consensus_6436#1 TATCTTTTGCTGAAAAAAAAAAAAAA---------------------------------- 420
*** **********************
consensus_6436#0 CGTATC 1266
consensus_6436#1 ------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||