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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6437#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1302 fasta sequence
[GGCCAAGTGACGAGCAAAACCCACCC-AAAAAAAAAATACAGCGGAGACGCGCGACGGCGGCGCAGTTCCCCGCTCCGCCGCTCCGTGCTCCGACCTCCGGCGACCCCGGGCACCGGCG-AGTGGCCCCGACGGCCATCCAGCTTGTCAGCATTATTAGGCCTCGAAACCTACCTTCCACATCCACGCCATTCTTCTCCGCCTCCTCCTCCTCCTCCTCCTCCTCGGATCCCTCGCAATGGCGGCGCCGCCTCAGCCCGTGCCGGCGCCCGCGGCCGCGTCGCCGGAGGTGTTCCGGCTCGGGTTCATCGGCCCGGGTAACCTCGCGGAGAGCATCGCTCGCGGCGTGGCGGCGTCGGGCGTCCTCCCGGCCACCGCGATCCGCACCGCGCCACACCGCCGCCCCGAGCGCGCCGAGGCCTTCTCATCCATCGGAGCTCACATCTTGGAGACCAACGCGCAGGTAGTTGATGACAGTGACGTGATCGTCATCTCTGTGAAGCCGCAGATCGTAAGGCAGGTACTGGTTGAGCTAAAACCCTTGCTGTCAGAAGAAAAGCTTCTGGTGTCCATTGCTGCTGGCATCAAGATGGAAGATCTGCAGGGTTGGTCTGGTCATCGAAGATTTATTAGAGTAATGCCAAACACCCCTTCAGCTGTTGGACAAGCAGCATCAGTGATGTGTTTGGGGGAGATGGCTACTGAGAATGATGAAAACCGTGTAAGAAGTTTATTCAGTGCCATTGGAAAAGTTTGGACAGCTGAAGAAAAATATTTTGATGCTGTAACTGGGCTAAGTGGTAGTGGCCCGGCTTATATTTTCTTAGCAATAGAGGCCATGGCTGATGGTGGAGTTGCTGCTGGTCTTCCTCGGGATCTTGCACTTGGTCTTGCATCTCAGACAGTTCTTGGTGCTGCAACCATGGTAAACAAGACTGGAAAACATCCGGGTCAGCTGAAGGATATGGTCACTTCCCCGGCAGGAACCACCATAACTGGGATACAAGAGCTTGAGAAGGGTGCATTCCGTGGGACGCTGATAAATGCCGTTGTTGCTGCTACAAAGCGTTGCCGTGAACTTTCTCAGAGTTAATCCTCTTGTTAGTTGTTAGTCCATTGGATGTGCGACTCTGCGCACGATTTCCCCTAGGGAAGAGGATGTGCGAATATTGATATTTAAACCTGATGAGGCTATCAGCAAATTTTGCTTGTAGTTTTATCCGAATAATTTGCTGCACTTTAGTGGCACGAAATCTGGATGATGTTAGATTGATACTTATTCTGGCAGCAGCTGTTTTTGATCGT]
[+] EMBL AK067368 [GGCCAAGTGACGAGCAAAACCCACCC AAAAAAAAAATACAGCGGAGACGCGCGACGGCGGCGCAGTTCCCCGCTCCGCCGCTCCGTGCTCCGACCTCCGGCGACCCCGGGCACCGGCG AGTGGCCCCGACGGCCATCCAGCTTGTCAGCATTATTAGGCCTCGAAACCTACCTTCCACATCCACGCCATTCTTCTCCGCCTCCTCCTCCTCCTCCTCCTCCTCGGATCCCTCGCAATGGCGGCGCCGCCTCAGCCCGTGCCGGCGCCCGCGGCCGCGTCGCCGGAGGTGTTCCGGCTCGGGTTCATCGGCCCGGGTAACCTCGCGGAGAGCATCGCTCGCGGCGTGGCGGCGTCGGGCGTCCTCCCGGCCACCGCGATCCGCACCGCGCCACACCGCCGCCCCGAGCGCGCCGAGGCCTTCTCATCCATCGGAGCTCACATCTTGGAGACCAACGCGCAGGTAGTTGATGACAGTGACGTGATCGTCATCTCTGTGAAGCCGCAGATCGTAAGGCAGGTACTGGTTGAGCTAAAACCCTTGCTGTCAGAAGAAAAGCTTCTGGTGTCCATTGCTGCTGGCATCAAGATGGAAGATCTGCAGGGTTGGTCTGGTCATCGAAGATTTATTAGAGTAATGCCAAACACCCCTTCAGCTGTTGGACAAGCAGCATCAGTGATGTGTTTGGGGGAGATGGCTACTGAGAATGATGAAAACCGTGTAAGAAGTTTATTCAGTGCCATTGGAAAAGTTTGGACAGCTGAAGAAAAATATTTTGATGCTGTAACTGGGCTAAGTGGTAGTGGCCCGGCTTATATTTTCTTAGCAATAGAGGCCATGGCTGATGGTGGAGTTGCTGCTGGTCTTCCTCGGGATCTTGCACTTGGTCTTGCATCTCAGACAGTTCTTGGTGCTGCAACCATGGTAAACAAGACTGGAAAACATCCGGGTCAGCTGAAGGATATGGTCACTTCCCCGGCAGGAACCACCATAACTGGGATACAAGAGCTTGAGAAGGGTGCATTCCGTGGGACGCTGATAAATGCCGTTGTTGCTGCTACAAAGCGTTGCCGTGAACTTTCTCAGAGTTAATCCTCTTGTTAGTTGTTAGTCCATTGGATGTGCGACTCTGCGCACGATTTCCCCTAGGGAAGAGGATGTGCGAATATTGATATTTAAACCTGATGAGGCTATCAGCAAATTTTGCTTGTAGTTTTATCCGAATAATTTGCTGCACTTTAGTGGCACGAAATCTGGATGATGTTAGATTGATACTTATTCTGGCAGCAGCTGTTTTTGATCGT]
[+] EMBL C73330 [ AAAACCCACCCAAAAAAAAAAATACAGCGGAGACGCGCGACGGCGGCGCAGTTCCCCGCTCCGCNGCTCCGTGCTCCGACCTCCGGCGACCCCGGGCACCGCCGAAGTGGCCCCGACGGCCATCCAGCTTGNAAGCATTATNAGGCCTCGAAACCTACCTTCCACATCCACGCNATTNTTCTCCGGCTCCTCCTCCTCCTTCTCCTCCTCGGATCCNTCGAAATGGCGGCG CGCCTCAGCCCGTGCCGGCGGCCGGGGCNGCcaccg ]
consensusID : consensus_6437#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1191 fasta sequence
[CGGCCAAGTGACGAGCAAAACCCACCCAAAAAAAAAATACAGCGGAGACGCGCGACGGCGGCGCAGTTCCCCGCTCCGCCGCTCCGTGCTCCGACCTCCGGCGACCCCGGGCACCGGCGAGTGGCCCCGACGGCCATCCAGCTTGTCAGCATTATTAGGCCTCGAAACCTACCTTCCACATCCACGCCATTCTTCTCCGCCTCCTCCTCCTCCTCCTCCTCCTCGGGTTCATCGGCCCGGGTAACCTCGCGGAGAGCATCGCCCGCGGCGTGGCGGCGTCGGGCGTCCTCCCGGCCACCGCGATCCGCACCGCGCCACACCGCCGCCCCGAGCGCGCCGAGGCCTTCTCATCCATCGGAGCTCACATCTTGGAGACCAACGCGCAGGTAGTTGATGACAGTGACGTGATCGTCATCTCTGTGAAGCCGCAGATCGTAAGGCAGGTACTGGTTGAGCTAAAACCCTTGCTGTCAGAAGAAAAGCTTCTGGTGTCCATTGCTGCTGGCATCAAGATGGAAGATCTGCAGGGTTGGTCTGGTCATCGAAGATTTATTAGAGTAATGCCAAACACCCGTTCAGCTGTTGGACAAGCAGCATCAGTGATGTGTTTGGGGGAGATGGCTACTGAGAATGATGAAAACCGTGTAAGAAGTTTATTCAGTGCCATTGGAAAAGTTTGGACAGCTGAAGAAAAATATTTTGATGCTGTAACTGGGCTAAGTGGTAGTGGCCCGGCTTATATTTTCTTAGCAATAGAGGCCATGGCTGATGGTGG-AGTTGCTGCTGGTCTTCCTCGGGATCTTGCACTTGGTCTTGCATCTCAGACAGTTCTTGGTGCTGCAACCATGGTAAACAAGACTGGAAAACATCCGGGTCAGCTGAAGGATATGGTCACTTCCCCGGCAGGAACCACCATAACTGGGATACAAGAGCTTGAGAAGGGTGCATTCCGTGGGACGCTGATAAATGCCGTTGTTGCTGCTACAAAGCGTTGCCGTGAACTTTCTCAGAGTTAATCCTCTTGTTAGTTGTTAGTCCATTGGATGTGCGACTCTGCGCACGATTTCCCCTAGGGAAGAGGATGTGCGAATATTGATATTTAAACCTGATGAGGCTATCAGCAAATTTTGCTTGTAGTTTTATCCGAATAATTTGCTGCACTTTAGTGGCACGAAATCTGGATGATGTTAG]
[+] EMBL AK070184 [CGGCCAAGTGACGAGCAAAACCCACCCAAAAAAAAAATACAGCGGAGACGCGCGACGGCGGCGCAGTTCCCCGCTCCGCCGCTCCGTGCTCCGACCTCCGGCGACCCCGGGCACCGGCGAGTGGCCCCGACGGCCATCCAGCTTGTCAGCATTATTAGGCCTCGAAACCTACCTTCCACATCCACGCCATTCTTCTCCGCCTCCTCCTCCTCCTCCTCCTCCTCGGGTTCATCGGCCCGGGTAACCTCGCGGAGAGCATCGCCCGCGGCGTGGCGGCGTCGGGCGTCCTCCCGGCCACCGCGATCCGCACCGCGCCACACCGCCGCCCCGAGCGCGCCGAGGCCTTCTCATCCATCGGAGCTCACATCTTGGAGACCAACGCGCAGGTAGTTGATGACAGTGACGTGATCGTCATCTCTGTGAAGCCGCAGATCGTAAGGCAGGTACTGGTTGAGCTAAAACCCTTGCTGTCAGAAGAAAAGCTTCTGGTGTCCATTGCTGCTGGCATCAAGATGGAAGATCTGCAGGGTTGGTCTGGTCATCGAAGATTTATTAGAGTAATGCCAAACACCCGTTCAGCTGTTGGACAAGCAGCATCAGTGATGTGTTTGGGGGAGATGGCTACTGAGAATGATGAAAACCGTGTAAGAAGTTTATTCAGTGCCATTGGAAAAGTTTGGACAGCTGAAGAAAAATATTTTGATGCTGTAACTGGGCTAAGTGGTAGTGGCCCGGCTTATATTTTCTTAGCAATAGAGGCCATGGCTGATGGTGG AGTTGCTGCTGGTCTTCCTCGGGATCTTGCACTTGGTCTTGCATCTCAGACAGTTCTTGGTGCTGCAACCATGGTAAACAAGACTGGAAAACATCCGGGTCAGCTGAAGGATATGGTCACTTCCCCGGCAGGAACCACCATAACTGGGATACAAGAGCTTGAGAAGGGTGCATTCCGTGGGACGCTGATAAATGCCGTTGTTGCTGCTACAAAGCGTTGCCGTGAACTTTCTCAGAGTTAATCCTCTTGTTAGTTGTTAGTCCATTGGATGTGCGACTCTGCGCACGATTTCCCCTAGGGAAGAGGATGTGCGAATATTGATATTTAAACCTGATGAGGCTATCAGCAAATTTTGCTTGTAGTTTTATCCGAATAATTTGCTGCACTTTAGTGGCACGAAATCTGGATGATGTTAG]
[-] EMBL C27158 [ TGGCTGATGGTGGAAGTTGCTGCTGGTCTTCCNCGGGAACTTGCACCTGGTCTTGCATCTCAGACAG TCCTGGTGCTGCAACCATGGTAAACAAGACTGGAAAACATCCGGGTCAGCTGAAGGATATGGTCACTTCCCCGGCAGGAACCACCATAACTGGGATACAAGAGCTTGAGAAGGGTGCATTCCGTGGGACGCTGATAAATGCCGTTGTTGCTGCTACAAAGCGTTGCCGTGAACTTTCTCAGAGTTAATCCTCTTGTTAGTTGTTAGTCCATTGGATGTGCGACTCTGCGCACGATTTCCCCTAGGGAAGAGGATGTGCGAATATTGATATTTAAACCTGATGAGGCTATCAGCAAATTTTGCTTGTAGTTTTATCCGAATAATTTGCTGCACTTTAG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6437#0 -GGCCAAGTGACGAGCAAAACCCACCCAAAAAAAAAATACAGCGGAGACGCGCGACGGCG 59
consensus_6437#1 CGGCCAAGTGACGAGCAAAACCCACCCAAAAAAAAAATACAGCGGAGACGCGCGACGGCG 60
***********************************************************
consensus_6437#0 GCGCAGTTCCCCGCTCCGCCGCTCCGTGCTCCGACCTCCGGCGACCCCGGGCACCGGCGA 119
consensus_6437#1 GCGCAGTTCCCCGCTCCGCCGCTCCGTGCTCCGACCTCCGGCGACCCCGGGCACCGGCGA 120
************************************************************
consensus_6437#0 GTGGCCCCGACGGCCATCCAGCTTGTCAGCATTATTAGGCCTCGAAACCTACCTTCCACA 179
consensus_6437#1 GTGGCCCCGACGGCCATCCAGCTTGTCAGCATTATTAGGCCTCGAAACCTACCTTCCACA 180
************************************************************
consensus_6437#0 TCCACGCCATTCTTCTCCGCCTCCTCCTCCTCCTCCTCCTCCTCGGATCCCTCGCAATGG 239
consensus_6437#1 TCCACGCCATTCTTCTCCGCCTCCTCCTCCTCCTCCTCCTCCTCGG-------------- 226
**********************************************
consensus_6437#0 CGGCGCCGCCTCAGCCCGTGCCGGCGCCCGCGGCCGCGTCGCCGGAGGTGTTCCGGCTCG 299
consensus_6437#1 ------------------------------------------------------------
consensus_6437#0 GGTTCATCGGCCCGGGTAACCTCGCGGAGAGCATCGCTCGCGGCGTGGCGGCGTCGGGCG 359
consensus_6437#1 -GTTCATCGGCCCGGGTAACCTCGCGGAGAGCATCGCCCGCGGCGTGGCGGCGTCGGGCG 285
************************************ **********************
consensus_6437#0 TCCTCCCGGCCACCGCGATCCGCACCGCGCCACACCGCCGCCCCGAGCGCGCCGAGGCCT 419
consensus_6437#1 TCCTCCCGGCCACCGCGATCCGCACCGCGCCACACCGCCGCCCCGAGCGCGCCGAGGCCT 345
************************************************************
consensus_6437#0 TCTCATCCATCGGAGCTCACATCTTGGAGACCAACGCGCAGGTAGTTGATGACAGTGACG 479
consensus_6437#1 TCTCATCCATCGGAGCTCACATCTTGGAGACCAACGCGCAGGTAGTTGATGACAGTGACG 405
************************************************************
consensus_6437#0 TGATCGTCATCTCTGTGAAGCCGCAGATCGTAAGGCAGGTACTGGTTGAGCTAAAACCCT 539
consensus_6437#1 TGATCGTCATCTCTGTGAAGCCGCAGATCGTAAGGCAGGTACTGGTTGAGCTAAAACCCT 465
************************************************************
consensus_6437#0 TGCTGTCAGAAGAAAAGCTTCTGGTGTCCATTGCTGCTGGCATCAAGATGGAAGATCTGC 599
consensus_6437#1 TGCTGTCAGAAGAAAAGCTTCTGGTGTCCATTGCTGCTGGCATCAAGATGGAAGATCTGC 525
************************************************************
consensus_6437#0 AGGGTTGGTCTGGTCATCGAAGATTTATTAGAGTAATGCCAAACACCCCTTCAGCTGTTG 659
consensus_6437#1 AGGGTTGGTCTGGTCATCGAAGATTTATTAGAGTAATGCCAAACACCCGTTCAGCTGTTG 585
************************************************ ***********
consensus_6437#0 GACAAGCAGCATCAGTGATGTGTTTGGGGGAGATGGCTACTGAGAATGATGAAAACCGTG 719
consensus_6437#1 GACAAGCAGCATCAGTGATGTGTTTGGGGGAGATGGCTACTGAGAATGATGAAAACCGTG 645
************************************************************
consensus_6437#0 TAAGAAGTTTATTCAGTGCCATTGGAAAAGTTTGGACAGCTGAAGAAAAATATTTTGATG 779
consensus_6437#1 TAAGAAGTTTATTCAGTGCCATTGGAAAAGTTTGGACAGCTGAAGAAAAATATTTTGATG 705
************************************************************
consensus_6437#0 CTGTAACTGGGCTAAGTGGTAGTGGCCCGGCTTATATTTTCTTAGCAATAGAGGCCATGG 839
consensus_6437#1 CTGTAACTGGGCTAAGTGGTAGTGGCCCGGCTTATATTTTCTTAGCAATAGAGGCCATGG 765
************************************************************
consensus_6437#0 CTGATGGTGGAGTTGCTGCTGGTCTTCCTCGGGATCTTGCACTTGGTCTTGCATCTCAGA 899
consensus_6437#1 CTGATGGTGGAGTTGCTGCTGGTCTTCCTCGGGATCTTGCACTTGGTCTTGCATCTCAGA 825
************************************************************
consensus_6437#0 CAGTTCTTGGTGCTGCAACCATGGTAAACAAGACTGGAAAACATCCGGGTCAGCTGAAGG 959
consensus_6437#1 CAGTTCTTGGTGCTGCAACCATGGTAAACAAGACTGGAAAACATCCGGGTCAGCTGAAGG 885
************************************************************
consensus_6437#0 ATATGGTCACTTCCCCGGCAGGAACCACCATAACTGGGATACAAGAGCTTGAGAAGGGTG 1019
consensus_6437#1 ATATGGTCACTTCCCCGGCAGGAACCACCATAACTGGGATACAAGAGCTTGAGAAGGGTG 945
************************************************************
consensus_6437#0 CATTCCGTGGGACGCTGATAAATGCCGTTGTTGCTGCTACAAAGCGTTGCCGTGAACTTT 1079
consensus_6437#1 CATTCCGTGGGACGCTGATAAATGCCGTTGTTGCTGCTACAAAGCGTTGCCGTGAACTTT 1005
************************************************************
consensus_6437#0 CTCAGAGTTAATCCTCTTGTTAGTTGTTAGTCCATTGGATGTGCGACTCTGCGCACGATT 1139
consensus_6437#1 CTCAGAGTTAATCCTCTTGTTAGTTGTTAGTCCATTGGATGTGCGACTCTGCGCACGATT 1065
************************************************************
consensus_6437#0 TCCCCTAGGGAAGAGGATGTGCGAATATTGATATTTAAACCTGATGAGGCTATCAGCAAA 1199
consensus_6437#1 TCCCCTAGGGAAGAGGATGTGCGAATATTGATATTTAAACCTGATGAGGCTATCAGCAAA 1125
************************************************************
consensus_6437#0 TTTTGCTTGTAGTTTTATCCGAATAATTTGCTGCACTTTAGTGGCACGAAATCTGGATGA 1259
consensus_6437#1 TTTTGCTTGTAGTTTTATCCGAATAATTTGCTGCACTTTAGTGGCACGAAATCTGGATGA 1185
************************************************************
consensus_6437#0 TGTTAGATTGATACTTATTCTGGCAGCAGCTGTTTTTGATCGT 1302
consensus_6437#1 TGTTAG------------------------------------- 1191
******
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||