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Oryza sativa
cluster # 6439 cluster # 6439       Sequences # 4       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6439#0 length = 1054 sequences # 2  
consensus_6439#1 length = 573 sequences # 1  
consensus_6439#2 length = 444 sequences # 1  

consensusID : consensus_6439#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1054
fasta sequence
                              [AAAAAAAGGGCTTGGGCAGTGAAACCAGTGAAGGGNTGATTCTGTGCTGTNCTTTAATCTTCAGCCTGATGGCACACCAGACCCGCTTAGCCTCCATGGAAGCTGCCCAGTTATAGAGGGCGAGAAATGGTCTGCGCCAAAGTGGATTCATGTGCGGTCTTACGACAATGCATCAAGCATGAAGCAAAGTGAAGAATGTTCTGATTTGAGCGAGAATTGCGCGGCTTGGGCTGCATCGGGTGAATGCAATAACAACGCAGTCTACATGATTGGAACGGAAGATGCACCCGGTCAGTGCCAGAAGAGTTGCAATGCTTGCAGTTTATAGAACATTTCGCATTTGGTAGACTCACCCGGTCTAGTTGGTTTGGATTTGACAAATTTGCAGACGGTGAGCTTAGATGGTTTTACAGTTCTTTTGTTTATTTTGGGTGAGGTGTGTGTTCCAAACTGCCAATAGCCATTAGTTGGATACATTTTGTTGTTACTGCAAATGCTGAAGACAGTGTTATGTAACTCACTGTTGTGCAGTTCAGAGTGTCATGCTGGCAGGCAACTACCTGTTCCCCCNTTATTTTTTTTGTTGTCTTGCTTCACAGTGGATTTCAGAACAGAAAACTGTGTCAGCTTGTCTCGATGATAACCAACTTGTTTGGCCCTTTCCACAATATAGAAGCCACTTTGTGCTCAAAAAAAAGCTTGCTCCTTCAAAGAAATTCCAGTCTCAGTCCTGCAGTGTAAAAGAGAGATGATTTGGCTACAGCAACAATGTTTGAGGCACTTCTTTTGCAAAATATTCTGAGATCAACCAGTCGTTTTCGCCCAAAAAGCATCTCCAACATTTCAGACAAATATTTGAAATGAATGGACATCAGTGAGTATGCTCTAATGTCATTTCAAGGGGAATTTAAACATAGATTCAGAATCATTACAGATTTTGAGAAGAGAATTACTTTGTTATCTCTCCCTCAGTGAAAAAGGATTGTGACACATCACCTGAAAGTAGAGTTTATTTCTTCAGGATGCTGCTCACTTTGGACCTGGCTTTTGGACC]

[+] EMBL AU068093             [AAAAAAAGGGCTTGGGCAGTGAAACCAGTGAAGGGNTGATTCTGTGCTGTNCTTTAATCTTCAGCCTGATGGCACACCAGACCCGCTTAGCCTCCATGGAAGCTGCCCAGTTATAGAGGGCGAGAAATGGTCTGCGCCAAAGTGGATTCATGTGCGGTCTTACGACAATGCATCAAGCATGAAGCAAAGTGAAGAATGTTCTGATTTGAGCGAGAATTGCGCGGCTTGGGCTGCATCGGGTGAATGCAATAACAACGCAGTCTACATGATTGGAACGGAAGATGCACCCGGTCAGTGCCAGAAGAGTTGCAATGCTTGCAGTTTATAGAACATTTCGCATTTGGTAGACTCACCCGGTCTAGTTGGTTTGGATTTGACAAATTTGCAGACGGTGAGCTTAGATGGTTTTACAGTTCTTTTGTTTATTTTGGGTGAGGTGTGTGTTCCAAACTGCCAATAGCCATTAGTTGGATACATTTTGTTGTTACTGCAAATGCTGAAGACAGTGTTATGTAACTCACTGTTGTGCAGTTCAGAGTGTCATGCTGGCAGGCAACTACCTGTTCCCCCNTTATTTTTTTTGTTGTCTTGCTTCACAGTGGATTTCAGAACAGAAAACTGTGTCAGCTTGTCTCGATGATAACCAACTTGTTTGGCCCTTTCCACAATATAGAAGCCACTTTGTGCTCAAAAAA                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL AK061608             [                                                                                                                                                                                                                                                                                                                                                                                                                      TTTACAGTTCTTTTGTTTATTTTGGGTGAGGTGTGTGTTCCAAACTGCCAATAGCCATTAGTTGGATACATTTTGTTGTTACTGCAAATGCTGAAGACAGTGTTATGTAACTCACTGTTGTGCAGTTCAGAGTGTCATGCTGGCAGGCAACTACCTGTTCCCCCTTTATTTTTTTTGTTGTCTTGCTTCACAGTGGATTTCAGAACAGAAAACTGTGTCAGCTTGTCTCGATGATAACCAACTTGTTTGGCCCTTTCCACAATATAGAAGCCACTTTGTGCTCAGTGTCAAGCTTGCTCCTTCAAAGAAATTCCAGTCTCAGTCCTGCAGTGTAAAAGAGAGATGATTTGGCTACAGCAACAATGTTTGAGGCACTTCTTTTGCAAAATATTCTGAGATCAACCAGTCGTTTTCGCCCAAAAAGCATCTCCAACATTTCAGACAAATATTTGAAATGAATGGACATCAGTGAGTATGCTCTAATGTCATTTCAAGGGGAATTTAAACATAGATTCAGAATCATTACAGATTTTGAGAAGAGAATTACTTTGTTATCTCTCCCTCAGTGAAAAAGGATTGTGACACATCACCTGAAAGTAGAGTTTATTTCTTCAGGATGCTGCTCACTTTGGACCTGGCTTTTGGACC]


>consensus_6439#0 AAAAAAAGGGCTTGGGCAGTGAAACCAGTGAAGGGNTGATTCTGTGCTGTNCTTTAATCT TCAGCCTGATGGCACACCAGACCCGCTTAGCCTCCATGGAAGCTGCCCAGTTATAGAGGG CGAGAAATGGTCTGCGCCAAAGTGGATTCATGTGCGGTCTTACGACAATGCATCAAGCAT GAAGCAAAGTGAAGAATGTTCTGATTTGAGCGAGAATTGCGCGGCTTGGGCTGCATCGGG TGAATGCAATAACAACGCAGTCTACATGATTGGAACGGAAGATGCACCCGGTCAGTGCCA GAAGAGTTGCAATGCTTGCAGTTTATAGAACATTTCGCATTTGGTAGACTCACCCGGTCT AGTTGGTTTGGATTTGACAAATTTGCAGACGGTGAGCTTAGATGGTTTTACAGTTCTTTT GTTTATTTTGGGTGAGGTGTGTGTTCCAAACTGCCAATAGCCATTAGTTGGATACATTTT GTTGTTACTGCAAATGCTGAAGACAGTGTTATGTAACTCACTGTTGTGCAGTTCAGAGTG TCATGCTGGCAGGCAACTACCTGTTCCCCCNTTATTTTTTTTGTTGTCTTGCTTCACAGT GGATTTCAGAACAGAAAACTGTGTCAGCTTGTCTCGATGATAACCAACTTGTTTGGCCCT TTCCACAATATAGAAGCCACTTTGTGCTCAAAAAAAAGCTTGCTCCTTCAAAGAAATTCC AGTCTCAGTCCTGCAGTGTAAAAGAGAGATGATTTGGCTACAGCAACAATGTTTGAGGCA CTTCTTTTGCAAAATATTCTGAGATCAACCAGTCGTTTTCGCCCAAAAAGCATCTCCAAC ATTTCAGACAAATATTTGAAATGAATGGACATCAGTGAGTATGCTCTAATGTCATTTCAA GGGGAATTTAAACATAGATTCAGAATCATTACAGATTTTGAGAAGAGAATTACTTTGTTA TCTCTCCCTCAGTGAAAAAGGATTGTGACACATCACCTGAAAGTAGAGTTTATTTCTTCA GGATGCTGCTCACTTTGGACCTGGCTTTTGGACC



consensusID : consensus_6439#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 573
fasta sequence
                              [TCAGACTGTGCAAAAAAGGGCTTGGCAGTGAAAGCAGTGAAGGGTGATTCTGTGCTGTTCTTTAATCTTCAGCCTGATGGCACACCAGACCCGCTTAGCCTCCATGGAAGCTGCCCAGTTATAGAGGGCGAGAAATGGTCTGCGCCAAAGTGGATTCATGTGCGGTCTTACGACAATGCATCAAGCATGAAGCAAAGTGAAGAATGTTTTGATTTGAGCGAGAATTGCGCGGCTTGGGCTGCATCGGGTGAATGCAATAACAACGCAGTTTACATGATTGGAACGGAAGATGCACCCGGTCAGTGCCAGAAGAGTTGCAATGCTTGCAGTTTATAGAACATTTCGCATTTGGTAAAATAAACCGGTCTAGTTGGTTTGGATTTGACAAATTTGCAGACGGAAAAAATAGATGGTTTTACAGTTCTTTTGTTTATTTTGGGTGAGGTGTGTGTTCCAAACTGCCAATAGCCATTAGTTGGATACATTTTGTTGTTACTGCAAATGCTGAAGACAGTGTTATGTAACTCACTGGGGTGCTAAAAAAAAAAAAAAAAAAAAAATGTCATGCCGTTA]

[-] EMBL CF328928             [TCAGACTGTGCAAAAAAGGGCTTGGCAGTGAAAGCAGTGAAGGGTGATTCTGTGCTGTTCTTTAATCTTCAGCCTGATGGCACACCAGACCCGCTTAGCCTCCATGGAAGCTGCCCAGTTATAGAGGGCGAGAAATGGTCTGCGCCAAAGTGGATTCATGTGCGGTCTTACGACAATGCATCAAGCATGAAGCAAAGTGAAGAATGTTTTGATTTGAGCGAGAATTGCGCGGCTTGGGCTGCATCGGGTGAATGCAATAACAACGCAGTTTACATGATTGGAACGGAAGATGCACCCGGTCAGTGCCAGAAGAGTTGCAATGCTTGCAGTTTATAGAACATTTCGCATTTGGTAAAATAAACCGGTCTAGTTGGTTTGGATTTGACAAATTTGCAGACGGAAAAAATAGATGGTTTTACAGTTCTTTTGTTTATTTTGGGTGAGGTGTGTGTTCCAAACTGCCAATAGCCATTAGTTGGATACATTTTGTTGTTACTGCAAATGCTGAAGACAGTGTTATGTAACTCACTGGGGTGCTAAAAAAAAAAAAAAAAAAAAAATGTCATGCCGTTA]


>consensus_6439#1 TCAGACTGTGCAAAAAAGGGCTTGGCAGTGAAAGCAGTGAAGGGTGATTCTGTGCTGTTC TTTAATCTTCAGCCTGATGGCACACCAGACCCGCTTAGCCTCCATGGAAGCTGCCCAGTT ATAGAGGGCGAGAAATGGTCTGCGCCAAAGTGGATTCATGTGCGGTCTTACGACAATGCA TCAAGCATGAAGCAAAGTGAAGAATGTTTTGATTTGAGCGAGAATTGCGCGGCTTGGGCT GCATCGGGTGAATGCAATAACAACGCAGTTTACATGATTGGAACGGAAGATGCACCCGGT CAGTGCCAGAAGAGTTGCAATGCTTGCAGTTTATAGAACATTTCGCATTTGGTAAAATAA ACCGGTCTAGTTGGTTTGGATTTGACAAATTTGCAGACGGAAAAAATAGATGGTTTTACA GTTCTTTTGTTTATTTTGGGTGAGGTGTGTGTTCCAAACTGCCAATAGCCATTAGTTGGA TACATTTTGTTGTTACTGCAAATGCTGAAGACAGTGTTATGTAACTCACTGGGGTGCTAA AAAAAAAAAAAAAAAAAAAATGTCATGCCGTTA



consensusID : consensus_6439#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 444
fasta sequence
                              [AGTGGATTCATGTGCGGTCTTACGACAATGCATCAAGCATGAAGCAAAGTGAAGAATGTTCTGATTTGAGCGAGAATTGCGCGGCTTGGGCTGCATCGGGTGAATGCAATAACAACGCAGTCTACATGATTGGAACGGAAGATGCACCCGGTCAGTGCCAGAAGAGTTGCAATGCTTGCAGTTTATAGAACATTTCGCATTTGGTAGACTCACCCGGTCTAGTTGGTTTGGATTTGACAAATTTGCAGACGGTGAGCTTAGATGGTTTTACAGTTCTTTTGTTTATTTTGGGTGAGGTGTGTGTTCCAAACTGCCAATAGCCATTAGTTGGATACATTTTGTTGTTACTGCAAATGCTGAAGACAGTGTTATGTAACTCACTGTTGTGCAGTTCAGAGTGTCATGCTGGCAGGCAACTACCTGTTCCCCCTTTAAAAAAAAAAA]

[+] EMBL AU077420             [AGTGGATTCATGTGCGGTCTTACGACAATGCATCAAGCATGAAGCAAAGTGAAGAATGTTCTGATTTGAGCGAGAATTGCGCGGCTTGGGCTGCATCGGGTGAATGCAATAACAACGCAGTCTACATGATTGGAACGGAAGATGCACCCGGTCAGTGCCAGAAGAGTTGCAATGCTTGCAGTTTATAGAACATTTCGCATTTGGTAGACTCACCCGGTCTAGTTGGTTTGGATTTGACAAATTTGCAGACGGTGAGCTTAGATGGTTTTACAGTTCTTTTGTTTATTTTGGGTGAGGTGTGTGTTCCAAACTGCCAATAGCCATTAGTTGGATACATTTTGTTGTTACTGCAAATGCTGAAGACAGTGTTATGTAACTCACTGTTGTGCAGTTCAGAGTGTCATGCTGGCAGGCAACTACCTGTTCCCCCTTTAAAAAAAAAAA]


>consensus_6439#2 AGTGGATTCATGTGCGGTCTTACGACAATGCATCAAGCATGAAGCAAAGTGAAGAATGTT CTGATTTGAGCGAGAATTGCGCGGCTTGGGCTGCATCGGGTGAATGCAATAACAACGCAG TCTACATGATTGGAACGGAAGATGCACCCGGTCAGTGCCAGAAGAGTTGCAATGCTTGCA GTTTATAGAACATTTCGCATTTGGTAGACTCACCCGGTCTAGTTGGTTTGGATTTGACAA ATTTGCAGACGGTGAGCTTAGATGGTTTTACAGTTCTTTTGTTTATTTTGGGTGAGGTGT GTGTTCCAAACTGCCAATAGCCATTAGTTGGATACATTTTGTTGTTACTGCAAATGCTGA AGACAGTGTTATGTAACTCACTGTTGTGCAGTTCAGAGTGTCATGCTGGCAGGCAACTAC CTGTTCCCCCTTTAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6439#0      --------AAAAAAAGGGCTTGGGCAGTGAAACCAGTGAAGGGNTGATTCTGTGCTGTNC 52
consensus_6439#2      ------------------------------------------------------------
consensus_6439#1      TCAGACTGTGCAAAAAAGGGCTTGGCAGTGAAAGCAGTGAAGGGTGATTCTGTGCTGTTC 60
                                                                                  

consensus_6439#0      TTTAATCTTCAGCCTGATGGCACACCAGACCCGCTTAGCCTCCATGGAAGCTGCCCAGTT 112
consensus_6439#2      ------------------------------------------------------------
consensus_6439#1      TTTAATCTTCAGCCTGATGGCACACCAGACCCGCTTAGCCTCCATGGAAGCTGCCCAGTT 120
                                                                                  

consensus_6439#0      ATAGAGGGCGAGAAATGGTCTGCGCCAAAGTGGATTCATGTGCGGTCTTACGACAATGCA 172
consensus_6439#2      ----------------------------AGTGGATTCATGTGCGGTCTTACGACAATGCA 32
consensus_6439#1      ATAGAGGGCGAGAAATGGTCTGCGCCAAAGTGGATTCATGTGCGGTCTTACGACAATGCA 180
                                                  ********************************

consensus_6439#0      TCAAGCATGAAGCAAAGTGAAGAATGTTCTGATTTGAGCGAGAATTGCGCGGCTTGGGCT 232
consensus_6439#2      TCAAGCATGAAGCAAAGTGAAGAATGTTCTGATTTGAGCGAGAATTGCGCGGCTTGGGCT 92
consensus_6439#1      TCAAGCATGAAGCAAAGTGAAGAATGTTTTGATTTGAGCGAGAATTGCGCGGCTTGGGCT 240
                      **************************** *******************************

consensus_6439#0      GCATCGGGTGAATGCAATAACAACGCAGTCTACATGATTGGAACGGAAGATGCACCCGGT 292
consensus_6439#2      GCATCGGGTGAATGCAATAACAACGCAGTCTACATGATTGGAACGGAAGATGCACCCGGT 152
consensus_6439#1      GCATCGGGTGAATGCAATAACAACGCAGTTTACATGATTGGAACGGAAGATGCACCCGGT 300
                      ***************************** ******************************

consensus_6439#0      CAGTGCCAGAAGAGTTGCAATGCTTGCAGTTTATAGAACATTTCGCATTTGGTAGACTCA 352
consensus_6439#2      CAGTGCCAGAAGAGTTGCAATGCTTGCAGTTTATAGAACATTTCGCATTTGGTAGACTCA 212
consensus_6439#1      CAGTGCCAGAAGAGTTGCAATGCTTGCAGTTTATAGAACATTTCGCATTTGGTAAAATAA 360
                      ****************************************************** * * *

consensus_6439#0      CCCGGTCTAGTTGGTTTGGATTTGACAAATTTGCAGACGGTGAGCTTAGATGGTTTTACA 412
consensus_6439#2      CCCGGTCTAGTTGGTTTGGATTTGACAAATTTGCAGACGGTGAGCTTAGATGGTTTTACA 272
consensus_6439#1      ACCGGTCTAGTTGGTTTGGATTTGACAAATTTGCAGACGGAAAAAATAGATGGTTTTACA 420
                       ***************************************  *   **************

consensus_6439#0      GTTCTTTTGTTTATTTTGGGTGAGGTGTGTGTTCCAAACTGCCAATAGCCATTAGTTGGA 472
consensus_6439#2      GTTCTTTTGTTTATTTTGGGTGAGGTGTGTGTTCCAAACTGCCAATAGCCATTAGTTGGA 332
consensus_6439#1      GTTCTTTTGTTTATTTTGGGTGAGGTGTGTGTTCCAAACTGCCAATAGCCATTAGTTGGA 480
                      ************************************************************

consensus_6439#0      TACATTTTGTTGTTACTGCAAATGCTGAAGACAGTGTTATGTAACTCACTGTTGTGCAGT 532
consensus_6439#2      TACATTTTGTTGTTACTGCAAATGCTGAAGACAGTGTTATGTAACTCACTGTTGTGCAGT 392
consensus_6439#1      TACATTTTGTTGTTACTGCAAATGCTGAAGACAGTGTTATGTAACTCACTGGGGTGCTAA 540
                      ***************************************************  ****   

consensus_6439#0      TCAGAGTGTCATGCTGGCAGGCAACTACCTGTTCCCCCNTTATTTTTTTTGTTGTCTTGC 592
consensus_6439#2      TCAGAGTGTCATGCTGGCAGGCAACTACCTGTTCCCCCTTTAAAAAAAAAAA-------- 444
consensus_6439#1      AAAAAA---------AAAAAAAAAAAAAATGTCATGCCGTTA------------------ 573
                        * *             *   **  *  ***    ** ***                  

consensus_6439#0      TTCACAGTGGATTTCAGAACAGAAAACTGTGTCAGCTTGTCTCGATGATAACCAACTTGT 652
consensus_6439#2      ------------------------------------------------------------
consensus_6439#1      ------------------------------------------------------------
                                                                                  

consensus_6439#0      TTGGCCCTTTCCACAATATAGAAGCCACTTTGTGCTCAAAAAAAAGCTTGCTCCTTCAAA 712
consensus_6439#2      ------------------------------------------------------------
consensus_6439#1      ------------------------------------------------------------
                                                                                  

consensus_6439#0      GAAATTCCAGTCTCAGTCCTGCAGTGTAAAAGAGAGATGATTTGGCTACAGCAACAATGT 772
consensus_6439#2      ------------------------------------------------------------
consensus_6439#1      ------------------------------------------------------------
                                                                                  

consensus_6439#0      TTGAGGCACTTCTTTTGCAAAATATTCTGAGATCAACCAGTCGTTTTCGCCCAAAAAGCA 832
consensus_6439#2      ------------------------------------------------------------
consensus_6439#1      ------------------------------------------------------------
                                                                                  

consensus_6439#0      TCTCCAACATTTCAGACAAATATTTGAAATGAATGGACATCAGTGAGTATGCTCTAATGT 892
consensus_6439#2      ------------------------------------------------------------
consensus_6439#1      ------------------------------------------------------------
                                                                                  

consensus_6439#0      CATTTCAAGGGGAATTTAAACATAGATTCAGAATCATTACAGATTTTGAGAAGAGAATTA 952
consensus_6439#2      ------------------------------------------------------------
consensus_6439#1      ------------------------------------------------------------
                                                                                  

consensus_6439#0      CTTTGTTATCTCTCCCTCAGTGAAAAAGGATTGTGACACATCACCTGAAAGTAGAGTTTA 1012
consensus_6439#2      ------------------------------------------------------------
consensus_6439#1      ------------------------------------------------------------
                                                                                  

consensus_6439#0      TTTCTTCAGGATGCTGCTCACTTTGGACCTGGCTTTTGGACC 1054
consensus_6439#2      ------------------------------------------
consensus_6439#1      ------------------------------------------
                                                                




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)