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Oryza sativa
cluster # 6443 cluster # 6443       Sequences # 4       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6443#0 length = 1394 sequences # 1  
consensus_6443#1 length = 1026 sequences # 1  
consensus_6443#2 length = 685 sequences # 1  
consensus_6443#3 length = 566 sequences # 1  

consensusID : consensus_6443#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1394
fasta sequence
                              [CCCCGTCTTTCCTTCCCCCGCCGCCGCCGCCGCCGCCTGCGCCGCTGCGCTATCTCCAACACTGCGAACAGCGGTGCCGGCGGCCTGCTCCTGCTACTTCCGCCGTATACTCTCGCTTCTGACCCCTTGCGCTCAAGTCAATCTTCCCTTGCCCACGGCCTCGACTCGCGTCTGCTCGCGAGTTCGCCCGCCGCCGCCTGCGCCGATCTCCATCCCGCGAGCAGCGGTGCCGTCGTCTTGCTGCTTCGGCCTCCGGTACGCCCCCGCTGCTCCCCGCACCATGGTTGGGCTTTCGGAAGGAGAGAAGCACTTCATCCGCGGGGGCATCGCGCAGGACCTCCGCACCGACGGCCGCAGGCGGCTGCAGTTCCGGGCCATCTCGGTCGAGACCGGAGTCATACCTCAGGCAAACGGCTCTGCGCGTGTTAGACTCGGTGCGACTGAAGTCATAGCTACTGTAAAGGCTGAGTTGGGGAAACCAAGCATTCTTCATCCTGATAAAGGGAAAGTTTCCATTTTTGTTGATTGCAGCCCAACTGCAGCACCCATGTTTGAGGGTAGAGGTTCTGAAGAATTTTCTGCTGAGCTCTGTGTTGCACTGCAAAGATGCTTACTCGGTGGTAAAAGTGGGGCAGGGGCTGCAATTGATTTATCCTCACTGATTGTCGTTGATGGAAAGGTCTGCTGGGATCTCTACATTGATGGACTTGTTGTTAGTTCTGATGGAAATTTGCTTGATGCATTGGCTGCTGCAATAAAGGTGGCTTTGAGTGATACAGGTATCCCAAAAGTCAATGTTTCTCTTAGTGCTACAACAGATGAGGAACCTGAAGTTAATGTTAGTGATGAAGAATTTTTGCAATTTGACACCTCCAGTGTGCCTGTTATTGTTACATTGACGAAGGTAGGTAAGCACTACATTGTGGATGCTACCTCAGAGGAAGAATCTCAGATGAGCTCTGCGGTTTCAGTATCGGTTAATAGGCATGGTCAAATACGTGGATTGACTAAGAGGGGCGGTGCAGGGTTGGATCCAAGTGTCATTTTTGATATGATATCTGTGGCTAAGCATGTAAGTCGACAATTCATCTCGGTATTGGATTCGGAGACATTAGCTGCTGAAGCGGCTGAGTAGAGAGGAAGGAGAGCAGAGGTTTTGATTATTGACATGCCAAGTTTGCAATGCATCTACCGGTTTCAGTTTTGCTCACAAAGATGAATTGTTGTCTTCTGAAGCGTACAATCTTACTGTAGCTTTATGCTGAAGTGAAAACGCATGGGATGCTGGCATGCTGCTGAAATGTATGCTTTTTAATTTATTCATAGATGCATTTAACTTTTTTGAGATAAGATACGTTTAATTTGGTATGCTTGCTAGATAAAAAAAAAAAAAA]

[+] EMBL AK064189             [CCCCGTCTTTCCTTCCCCCGCCGCCGCCGCCGCCGCCTGCGCCGCTGCGCTATCTCCAACACTGCGAACAGCGGTGCCGGCGGCCTGCTCCTGCTACTTCCGCCGTATACTCTCGCTTCTGACCCCTTGCGCTCAAGTCAATCTTCCCTTGCCCACGGCCTCGACTCGCGTCTGCTCGCGAGTTCGCCCGCCGCCGCCTGCGCCGATCTCCATCCCGCGAGCAGCGGTGCCGTCGTCTTGCTGCTTCGGCCTCCGGTACGCCCCCGCTGCTCCCCGCACCATGGTTGGGCTTTCGGAAGGAGAGAAGCACTTCATCCGCGGGGGCATCGCGCAGGACCTCCGCACCGACGGCCGCAGGCGGCTGCAGTTCCGGGCCATCTCGGTCGAGACCGGAGTCATACCTCAGGCAAACGGCTCTGCGCGTGTTAGACTCGGTGCGACTGAAGTCATAGCTACTGTAAAGGCTGAGTTGGGGAAACCAAGCATTCTTCATCCTGATAAAGGGAAAGTTTCCATTTTTGTTGATTGCAGCCCAACTGCAGCACCCATGTTTGAGGGTAGAGGTTCTGAAGAATTTTCTGCTGAGCTCTGTGTTGCACTGCAAAGATGCTTACTCGGTGGTAAAAGTGGGGCAGGGGCTGCAATTGATTTATCCTCACTGATTGTCGTTGATGGAAAGGTCTGCTGGGATCTCTACATTGATGGACTTGTTGTTAGTTCTGATGGAAATTTGCTTGATGCATTGGCTGCTGCAATAAAGGTGGCTTTGAGTGATACAGGTATCCCAAAAGTCAATGTTTCTCTTAGTGCTACAACAGATGAGGAACCTGAAGTTAATGTTAGTGATGAAGAATTTTTGCAATTTGACACCTCCAGTGTGCCTGTTATTGTTACATTGACGAAGGTAGGTAAGCACTACATTGTGGATGCTACCTCAGAGGAAGAATCTCAGATGAGCTCTGCGGTTTCAGTATCGGTTAATAGGCATGGTCAAATACGTGGATTGACTAAGAGGGGCGGTGCAGGGTTGGATCCAAGTGTCATTTTTGATATGATATCTGTGGCTAAGCATGTAAGTCGACAATTCATCTCGGTATTGGATTCGGAGACATTAGCTGCTGAAGCGGCTGAGTAGAGAGGAAGGAGAGCAGAGGTTTTGATTATTGACATGCCAAGTTTGCAATGCATCTACCGGTTTCAGTTTTGCTCACAAAGATGAATTGTTGTCTTCTGAAGCGTACAATCTTACTGTAGCTTTATGCTGAAGTGAAAACGCATGGGATGCTGGCATGCTGCTGAAATGTATGCTTTTTAATTTATTCATAGATGCATTTAACTTTTTTGAGATAAGATACGTTTAATTTGGTATGCTTGCTAGATAAAAAAAAAAAAAA]


>consensus_6443#0 CCCCGTCTTTCCTTCCCCCGCCGCCGCCGCCGCCGCCTGCGCCGCTGCGCTATCTCCAAC ACTGCGAACAGCGGTGCCGGCGGCCTGCTCCTGCTACTTCCGCCGTATACTCTCGCTTCT GACCCCTTGCGCTCAAGTCAATCTTCCCTTGCCCACGGCCTCGACTCGCGTCTGCTCGCG AGTTCGCCCGCCGCCGCCTGCGCCGATCTCCATCCCGCGAGCAGCGGTGCCGTCGTCTTG CTGCTTCGGCCTCCGGTACGCCCCCGCTGCTCCCCGCACCATGGTTGGGCTTTCGGAAGG AGAGAAGCACTTCATCCGCGGGGGCATCGCGCAGGACCTCCGCACCGACGGCCGCAGGCG GCTGCAGTTCCGGGCCATCTCGGTCGAGACCGGAGTCATACCTCAGGCAAACGGCTCTGC GCGTGTTAGACTCGGTGCGACTGAAGTCATAGCTACTGTAAAGGCTGAGTTGGGGAAACC AAGCATTCTTCATCCTGATAAAGGGAAAGTTTCCATTTTTGTTGATTGCAGCCCAACTGC AGCACCCATGTTTGAGGGTAGAGGTTCTGAAGAATTTTCTGCTGAGCTCTGTGTTGCACT GCAAAGATGCTTACTCGGTGGTAAAAGTGGGGCAGGGGCTGCAATTGATTTATCCTCACT GATTGTCGTTGATGGAAAGGTCTGCTGGGATCTCTACATTGATGGACTTGTTGTTAGTTC TGATGGAAATTTGCTTGATGCATTGGCTGCTGCAATAAAGGTGGCTTTGAGTGATACAGG TATCCCAAAAGTCAATGTTTCTCTTAGTGCTACAACAGATGAGGAACCTGAAGTTAATGT TAGTGATGAAGAATTTTTGCAATTTGACACCTCCAGTGTGCCTGTTATTGTTACATTGAC GAAGGTAGGTAAGCACTACATTGTGGATGCTACCTCAGAGGAAGAATCTCAGATGAGCTC TGCGGTTTCAGTATCGGTTAATAGGCATGGTCAAATACGTGGATTGACTAAGAGGGGCGG TGCAGGGTTGGATCCAAGTGTCATTTTTGATATGATATCTGTGGCTAAGCATGTAAGTCG ACAATTCATCTCGGTATTGGATTCGGAGACATTAGCTGCTGAAGCGGCTGAGTAGAGAGG AAGGAGAGCAGAGGTTTTGATTATTGACATGCCAAGTTTGCAATGCATCTACCGGTTTCA GTTTTGCTCACAAAGATGAATTGTTGTCTTCTGAAGCGTACAATCTTACTGTAGCTTTAT GCTGAAGTGAAAACGCATGGGATGCTGGCATGCTGCTGAAATGTATGCTTTTTAATTTAT TCATAGATGCATTTAACTTTTTTGAGATAAGATACGTTTAATTTGGTATGCTTGCTAGAT AAAAAAAAAAAAAA



consensusID : consensus_6443#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1026
fasta sequence
                              [CGTCCCCGTCTTTCCTTCCCCCGCCGCCGCCGCCGCCGCCTGCGCCGCTGCGCTATCTCCAACACTGCGAACAGCGGTGCCGGCGGCCTGCTCCTGCTACTTCCGCCGTATACTCTCGCTTCTGACCCCTTGCGCTCAAGTCAATCTTCCCTTGCCCACGGCCTCGACTCGCGTCTGCTCGCGAGTTCGCCCGCCGCCGCCTGCGCCGATCTCCATCCCGCGAGCAGCGGTGCCGTCGTCTTGCTGCTTCGGCCTCCGGTTAGCACCCGTGCCTATGCACATCCCCTTTCTTTCTCATCCCTCTCTACCTGCACCTTTTATCTTATGCCCCACGCTAGGTACGCCCCCGCTGCTCCCCGCACCATGGTTGGGCTTTCGGAAGGAGAGAAGCACTTCATCCGCGGGGGCATCGCGCAGGACCTCCGCACCGACGGCCGCAGGCGGCTGCAGTTCCGGGCCATCTCGGTCGAGACCGGAGTCATACCTCAGGCAAACGGCTCTGCGCGTGTTAGACTCGGTGCGACTGAAGTCATAGCTACTGTAAAGGCTGAGTTGGGGAAACCAAGCATTCTTCATCCTGATAAAGGGAAAGTTTCCATTTTTGTTGATTGCAGCCCAACTGCAGCACCCATGTTTGAGGGTAGAGGTTCTGAAGAATTTTCTGCTGAGCTCTGTGTTGCACTGCAAAGATGCTTACTCGGTGGTAAAAGTGGGGCAGGTCTGCTGGGATCTCTACATTGATGGACTTGTTGTTAGTTCTGATGGAAATTTGCTTGATGCATTGGCTGCTGCAATAAAGGTAATTGACACTTAAATTAGACAATATCTTCTACGAAGTTTAGGTCGTTGCAAATATTTAGTGCAGCCAGGAAATGAAGCTACAATATTATACTGGTTAAAAAGGTTAATAGATTTTATAGAACATTATGATGGTTTTGGAGATTGGAGGGCCCTGCTTTCAAGTTTTGTAAAAATGGTCTTATGCAATGAATCCTCTATCTTGTTCAATAAAAAGAAAATCCATGA]

[+] EMBL AK059940             [CGTCCCCGTCTTTCCTTCCCCCGCCGCCGCCGCCGCCGCCTGCGCCGCTGCGCTATCTCCAACACTGCGAACAGCGGTGCCGGCGGCCTGCTCCTGCTACTTCCGCCGTATACTCTCGCTTCTGACCCCTTGCGCTCAAGTCAATCTTCCCTTGCCCACGGCCTCGACTCGCGTCTGCTCGCGAGTTCGCCCGCCGCCGCCTGCGCCGATCTCCATCCCGCGAGCAGCGGTGCCGTCGTCTTGCTGCTTCGGCCTCCGGTTAGCACCCGTGCCTATGCACATCCCCTTTCTTTCTCATCCCTCTCTACCTGCACCTTTTATCTTATGCCCCACGCTAGGTACGCCCCCGCTGCTCCCCGCACCATGGTTGGGCTTTCGGAAGGAGAGAAGCACTTCATCCGCGGGGGCATCGCGCAGGACCTCCGCACCGACGGCCGCAGGCGGCTGCAGTTCCGGGCCATCTCGGTCGAGACCGGAGTCATACCTCAGGCAAACGGCTCTGCGCGTGTTAGACTCGGTGCGACTGAAGTCATAGCTACTGTAAAGGCTGAGTTGGGGAAACCAAGCATTCTTCATCCTGATAAAGGGAAAGTTTCCATTTTTGTTGATTGCAGCCCAACTGCAGCACCCATGTTTGAGGGTAGAGGTTCTGAAGAATTTTCTGCTGAGCTCTGTGTTGCACTGCAAAGATGCTTACTCGGTGGTAAAAGTGGGGCAGGTCTGCTGGGATCTCTACATTGATGGACTTGTTGTTAGTTCTGATGGAAATTTGCTTGATGCATTGGCTGCTGCAATAAAGGTAATTGACACTTAAATTAGACAATATCTTCTACGAAGTTTAGGTCGTTGCAAATATTTAGTGCAGCCAGGAAATGAAGCTACAATATTATACTGGTTAAAAAGGTTAATAGATTTTATAGAACATTATGATGGTTTTGGAGATTGGAGGGCCCTGCTTTCAAGTTTTGTAAAAATGGTCTTATGCAATGAATCCTCTATCTTGTTCAATAAAAAGAAAATCCATGA]


>consensus_6443#1 CGTCCCCGTCTTTCCTTCCCCCGCCGCCGCCGCCGCCGCCTGCGCCGCTGCGCTATCTCC AACACTGCGAACAGCGGTGCCGGCGGCCTGCTCCTGCTACTTCCGCCGTATACTCTCGCT TCTGACCCCTTGCGCTCAAGTCAATCTTCCCTTGCCCACGGCCTCGACTCGCGTCTGCTC GCGAGTTCGCCCGCCGCCGCCTGCGCCGATCTCCATCCCGCGAGCAGCGGTGCCGTCGTC TTGCTGCTTCGGCCTCCGGTTAGCACCCGTGCCTATGCACATCCCCTTTCTTTCTCATCC CTCTCTACCTGCACCTTTTATCTTATGCCCCACGCTAGGTACGCCCCCGCTGCTCCCCGC ACCATGGTTGGGCTTTCGGAAGGAGAGAAGCACTTCATCCGCGGGGGCATCGCGCAGGAC CTCCGCACCGACGGCCGCAGGCGGCTGCAGTTCCGGGCCATCTCGGTCGAGACCGGAGTC ATACCTCAGGCAAACGGCTCTGCGCGTGTTAGACTCGGTGCGACTGAAGTCATAGCTACT GTAAAGGCTGAGTTGGGGAAACCAAGCATTCTTCATCCTGATAAAGGGAAAGTTTCCATT TTTGTTGATTGCAGCCCAACTGCAGCACCCATGTTTGAGGGTAGAGGTTCTGAAGAATTT TCTGCTGAGCTCTGTGTTGCACTGCAAAGATGCTTACTCGGTGGTAAAAGTGGGGCAGGT CTGCTGGGATCTCTACATTGATGGACTTGTTGTTAGTTCTGATGGAAATTTGCTTGATGC ATTGGCTGCTGCAATAAAGGTAATTGACACTTAAATTAGACAATATCTTCTACGAAGTTT AGGTCGTTGCAAATATTTAGTGCAGCCAGGAAATGAAGCTACAATATTATACTGGTTAAA AAGGTTAATAGATTTTATAGAACATTATGATGGTTTTGGAGATTGGAGGGCCCTGCTTTC AAGTTTTGTAAAAATGGTCTTATGCAATGAATCCTCTATCTTGTTCAATAAAAAGAAAAT CCATGA



consensusID : consensus_6443#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 685
fasta sequence
                              [GGTGGCTNTGAGTGATACAGGTATCCCAAAAGTCAATGTTTCTCTTAGTGCTACAACAGATGAGGAACCTGAAGTTAATGTTAGTGATGAAGAATTTTTGCAATTTGACACCTCCAGTGTGCCTGTTTTTGTTACATTGACGAAGGTAGGTAAGCACTACATTGTGGATGCTACCTCAGAGGAAGAATCTCAGATGAGCTTTGCGGTTTCAGTATCAGTTAATAGGCATGGTCAAATACGTGGATTGACTAAGAGGGGCGGTGCAGGGTTGGATCCAAGTGTCATTTTTGATATGATATCTGTGGCTAAGTATGTAAGTCGACAATTCATCTCGGTATTGGATTCGGAGACATTAGCTGCTGAAGCGGCTGAGTAGAGAGGAAGGAGAGCAGAGGTTTTGATTATTGACATGCCAAGTTTGCAATGCATCTACCGGTTTCAGTTTTGCCCACAAAGATGAATTGTTGTCTTCTGAAGCGTACAATCTTACTGTAGCTTTATGCTGAAGTGAAAACGCATGGGATGCTGGCATGCTGCTGAAATGTATGCTTTTTAATTTATTCATAGATGCATTTAACTTTTTTGAGATAAGATACGTTTAATTTGGTATGCTTGCTAGATAAATTGTTGTATTGTACTCTCCAAATATAAATATTTGATGTTTAGAGCAAGATTCAAAAAAAAA]

[-] EMBL CA758980             [GGTGGCTNTGAGTGATACAGGTATCCCAAAAGTCAATGTTTCTCTTAGTGCTACAACAGATGAGGAACCTGAAGTTAATGTTAGTGATGAAGAATTTTTGCAATTTGACACCTCCAGTGTGCCTGTTTTTGTTACATTGACGAAGGTAGGTAAGCACTACATTGTGGATGCTACCTCAGAGGAAGAATCTCAGATGAGCTTTGCGGTTTCAGTATCAGTTAATAGGCATGGTCAAATACGTGGATTGACTAAGAGGGGCGGTGCAGGGTTGGATCCAAGTGTCATTTTTGATATGATATCTGTGGCTAAGTATGTAAGTCGACAATTCATCTCGGTATTGGATTCGGAGACATTAGCTGCTGAAGCGGCTGAGTAGAGAGGAAGGAGAGCAGAGGTTTTGATTATTGACATGCCAAGTTTGCAATGCATCTACCGGTTTCAGTTTTGCCCACAAAGATGAATTGTTGTCTTCTGAAGCGTACAATCTTACTGTAGCTTTATGCTGAAGTGAAAACGCATGGGATGCTGGCATGCTGCTGAAATGTATGCTTTTTAATTTATTCATAGATGCATTTAACTTTTTTGAGATAAGATACGTTTAATTTGGTATGCTTGCTAGATAAATTGTTGTATTGTACTCTCCAAATATAAATATTTGATGTTTAGAGCAAGATTCAAAAAAAAA]


>consensus_6443#2 GGTGGCTNTGAGTGATACAGGTATCCCAAAAGTCAATGTTTCTCTTAGTGCTACAACAGA TGAGGAACCTGAAGTTAATGTTAGTGATGAAGAATTTTTGCAATTTGACACCTCCAGTGT GCCTGTTTTTGTTACATTGACGAAGGTAGGTAAGCACTACATTGTGGATGCTACCTCAGA GGAAGAATCTCAGATGAGCTTTGCGGTTTCAGTATCAGTTAATAGGCATGGTCAAATACG TGGATTGACTAAGAGGGGCGGTGCAGGGTTGGATCCAAGTGTCATTTTTGATATGATATC TGTGGCTAAGTATGTAAGTCGACAATTCATCTCGGTATTGGATTCGGAGACATTAGCTGC TGAAGCGGCTGAGTAGAGAGGAAGGAGAGCAGAGGTTTTGATTATTGACATGCCAAGTTT GCAATGCATCTACCGGTTTCAGTTTTGCCCACAAAGATGAATTGTTGTCTTCTGAAGCGT ACAATCTTACTGTAGCTTTATGCTGAAGTGAAAACGCATGGGATGCTGGCATGCTGCTGA AATGTATGCTTTTTAATTTATTCATAGATGCATTTAACTTTTTTGAGATAAGATACGTTT AATTTGGTATGCTTGCTAGATAAATTGTTGTATTGTACTCTCCAAATATAAATATTTGAT GTTTAGAGCAAGATTCAAAAAAAAA



consensusID : consensus_6443#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 566
fasta sequence
                              [GACTGAAGTCATAGCTACTGTAAAGGCTGAGTTGGGGAAACCAAGCATTCTTCATCCTGATAAAGGGAAAGTTTCCATTTTTGTTGATTGCAGCCCAACTGCAGCACCCATGTTTGAGGGTAGAGGTTCTGAAGAATTTTCTGCTGAGCTCTGTGTTGCACTGCAAAGATGCTTACTCGGTGGTATAAGTGGGGCAGGGGCTGCAATTGATTTATCCTCACTGATTGTCGTTGATGGAAAGGTCTGCTGGGATCTCTACATTGATGGACTTGTTGTTAGTTCTGATGGAAATTTGCTTGATGCATTGGCTGCTGCGATAAAGGTAATTGACACTTAAATTAGACAATATCTTCTACGAAGTTTAGGTCGTTGCAAATATTTAGTGCAGCCAGGAAATGAAGCTACAATATTATACTGGTTAAAAAGGTTAATAGATTTTATAGAACATTATGATGGTTTTGGAGATTGGAGGGCCCTGCTTTCAAGTTTTGTAAAAATGGTCTTATGCAATGAATCCTCTATCTTGTTCAATAAAAAGAAAATCCATGATTATCTTTGCAAAAAAA]

[-] EMBL CF329131             [GACTGAAGTCATAGCTACTGTAAAGGCTGAGTTGGGGAAACCAAGCATTCTTCATCCTGATAAAGGGAAAGTTTCCATTTTTGTTGATTGCAGCCCAACTGCAGCACCCATGTTTGAGGGTAGAGGTTCTGAAGAATTTTCTGCTGAGCTCTGTGTTGCACTGCAAAGATGCTTACTCGGTGGTATAAGTGGGGCAGGGGCTGCAATTGATTTATCCTCACTGATTGTCGTTGATGGAAAGGTCTGCTGGGATCTCTACATTGATGGACTTGTTGTTAGTTCTGATGGAAATTTGCTTGATGCATTGGCTGCTGCGATAAAGGTAATTGACACTTAAATTAGACAATATCTTCTACGAAGTTTAGGTCGTTGCAAATATTTAGTGCAGCCAGGAAATGAAGCTACAATATTATACTGGTTAAAAAGGTTAATAGATTTTATAGAACATTATGATGGTTTTGGAGATTGGAGGGCCCTGCTTTCAAGTTTTGTAAAAATGGTCTTATGCAATGAATCCTCTATCTTGTTCAATAAAAAGAAAATCCATGATTATCTTTGCAAAAAAA]


>consensus_6443#3 GACTGAAGTCATAGCTACTGTAAAGGCTGAGTTGGGGAAACCAAGCATTCTTCATCCTGA TAAAGGGAAAGTTTCCATTTTTGTTGATTGCAGCCCAACTGCAGCACCCATGTTTGAGGG TAGAGGTTCTGAAGAATTTTCTGCTGAGCTCTGTGTTGCACTGCAAAGATGCTTACTCGG TGGTATAAGTGGGGCAGGGGCTGCAATTGATTTATCCTCACTGATTGTCGTTGATGGAAA GGTCTGCTGGGATCTCTACATTGATGGACTTGTTGTTAGTTCTGATGGAAATTTGCTTGA TGCATTGGCTGCTGCGATAAAGGTAATTGACACTTAAATTAGACAATATCTTCTACGAAG TTTAGGTCGTTGCAAATATTTAGTGCAGCCAGGAAATGAAGCTACAATATTATACTGGTT AAAAAGGTTAATAGATTTTATAGAACATTATGATGGTTTTGGAGATTGGAGGGCCCTGCT TTCAAGTTTTGTAAAAATGGTCTTATGCAATGAATCCTCTATCTTGTTCAATAAAAAGAA AATCCATGATTATCTTTGCAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6443#1      CGTCCCCGTCTTTCCTTCCCCCGCCGCCGCCGCCGCCGCCTGCGCCGCTGCGCTATCTCC 60
consensus_6443#3      ------------------------------------------------------------
consensus_6443#0      ---CCCCGTCTTTCCTTCCCCCGCCGCCGCCGCCGCCGCCTGCGCCGCTGCGCTATCTCC 57
consensus_6443#2      ------------------------------------------------------------
                                                                                  

consensus_6443#1      AACACTGCGAACAGCGGTGCCGGCGGCCTGCTCCTGCTACTTCCGCCGTATACTCTCGCT 120
consensus_6443#3      ------------------------------------------------------------
consensus_6443#0      AACACTGCGAACAGCGGTGCCGGCGGCCTGCTCCTGCTACTTCCGCCGTATACTCTCGCT 117
consensus_6443#2      ------------------------------------------------------------
                                                                                  

consensus_6443#1      TCTGACCCCTTGCGCTCAAGTCAATCTTCCCTTGCCCACGGCCTCGACTCGCGTCTGCTC 180
consensus_6443#3      ------------------------------------------------------------
consensus_6443#0      TCTGACCCCTTGCGCTCAAGTCAATCTTCCCTTGCCCACGGCCTCGACTCGCGTCTGCTC 177
consensus_6443#2      ------------------------------------------------------------
                                                                                  

consensus_6443#1      GCGAGTTCGCCCGCCGCCGCCTGCGCCGATCTCCATCCCGCGAGCAGCGGTGCCGTCGTC 240
consensus_6443#3      ------------------------------------------------------------
consensus_6443#0      GCGAGTTCGCCCGCCGCCGCCTGCGCCGATCTCCATCCCGCGAGCAGCGGTGCCGTCGTC 237
consensus_6443#2      ------------------------------------------------------------
                                                                                  

consensus_6443#1      TTGCTGCTTCGGCCTCCGGTTAGCACCCGTGCCTATGCACATCCCCTTTCTTTCTCATCC 300
consensus_6443#3      ------------------------------------------------------------
consensus_6443#0      TTGCTGCTTCGGCCTCCGGT---------------------------------------- 257
consensus_6443#2      ------------------------------------------------------------
                                                                                  

consensus_6443#1      CTCTCTACCTGCACCTTTTATCTTATGCCCCACGCTAGGTACGCCCCCGCTGCTCCCCGC 360
consensus_6443#3      ------------------------------------------------------------
consensus_6443#0      ----------------------------------------ACGCCCCCGCTGCTCCCCGC 277
consensus_6443#2      ------------------------------------------------------------
                                                                                  

consensus_6443#1      ACCATGGTTGGGCTTTCGGAAGGAGAGAAGCACTTCATCCGCGGGGGCATCGCGCAGGAC 420
consensus_6443#3      ------------------------------------------------------------
consensus_6443#0      ACCATGGTTGGGCTTTCGGAAGGAGAGAAGCACTTCATCCGCGGGGGCATCGCGCAGGAC 337
consensus_6443#2      ------------------------------------------GGTGGCTNTGAGTGATAC 18
                                                                                  

consensus_6443#1      CTCCGCACCGACGGCCGCAGGCGGCTGCAGTTCCGGGCCATCTCGGTCGAGACCGGAGTC 480
consensus_6443#3      ------------------------------------------------------------
consensus_6443#0      CTCCGCACCGACGGCCGCAGGCGGCTGCAGTTCCGGGCCATCTCGGTCGAGACCGGAGTC 397
consensus_6443#2      AGGTATCCCAAAAGTCAATGTTTCTCTTAGTGCTACAACAGATGAG--GAACCTGAAGTT 76
                                                                                  

consensus_6443#1      ATACCTCAGGCAAACGGCTCTGCGCGTGTTAGACTCGGTGCGACTGAAGTCATAGCTACT 540
consensus_6443#3      -----------------------------------------GACTGAAGTCATAGCTACT 19
consensus_6443#0      ATACCTCAGGCAAACGGCTCTGCGCGTGTTAGACTCGGTGCGACTGAAGTCATAGCTACT 457
consensus_6443#2      AATGTTAGTGATGAAGAATTTTTGCAATTTGA---CACCTCCAGTGTGCCTGTTTTTGTT 133
                                                                * **      *   *  *

consensus_6443#1      GTAAAGGCTGAGTTGGGGAAACCAAGCATTCTTCATCCTGATAAAGGGAAAGTTTCCATT 600
consensus_6443#3      GTAAAGGCTGAGTTGGGGAAACCAAGCATTCTTCATCCTGATAAAGGGAAAGTTTCCATT 79
consensus_6443#0      GTAAAGGCTGAGTTGGGGAAACCAAGCATTCTTCATCCTGATAAAGGGAAAGTTTCCATT 517
consensus_6443#2      ACATTGACGAAGGTAGGTAAGCACTACATTGTGGATGCTACCTCAGAGGAAG----AATC 189
                        *  * *  ** * ** ** *    **** *  ** **     ** * ***     ** 

consensus_6443#1      TTTGTTGATTGCAGCCCAACTGCAGCACCCATGTTTGAGGGTAGAGGTTCTGAAGAATTT 660
consensus_6443#3      TTTGTTGATTGCAGCCCAACTGCAGCACCCATGTTTGAGGGTAGAGGTTCTGAAGAATTT 139
consensus_6443#0      TTTGTTGATTGCAGCCCAACTGCAGCACCCATGTTTGAGGGTAGAGGTTCTGAAGAATTT 577
consensus_6443#2      TCAGATGA--GCTTTGCGGTTTCAGTATCAGTTAATAGGCATGGTCAAATACGTGGATTG 247
                      *  * ***  **    *   * *** * *  *   *  *  * *          * *** 

consensus_6443#1      TCTGCTGAGCTCTGTGTTGCACTGCA---AAGATGCTTACTCGGTGGTAAAAGTGGGGCA 717
consensus_6443#3      TCTGCTGAGCTCTGTGTTGCACTGCA---AAGATGCTTACTCGGTGGTATAAGTGGGGCA 196
consensus_6443#0      TCTGCTGAGCTCTGTGTTGCACTGCA---AAGATGCTTACTCGGTGGTAAAAGTGGGGCA 634
consensus_6443#2      ACTAAGAGGGGCGGTGCAGGGTTGGATCCAAGTGTCATTTTTGATATGATATCTGTGGCT 307
                       **     *  * ***  *   ** *   ***   * *  * * *   * *  ** *** 

consensus_6443#1      GG--------------------------------------------T--CTGCTGGGATC 731
consensus_6443#3      GGGGCTGCAATTGATTTATCCTCACTGATTGTCGTTGATGGAAAGGT--CTGCTGGGATC 254
consensus_6443#0      GGGGCTGCAATTGATTTATCCTCACTGATTGTCGTTGATGGAAAGGT--CTGCTGGGATC 692
consensus_6443#2      AAGTATGTAAGTCGACAATTCATCTCGGTATTGGATTCGGAGACATTAGCTGCTGAAGCG 367
                                                                    *  ******     

consensus_6443#1      TCTACATTGATGGACTTGTTGTTAG---TTCTGATGGA-AATTTGCTTGAT--GCATTGG 785
consensus_6443#3      TCTACATTGATGGACTTGTTGTTAG---TTCTGATGGA-AATTTGCTTGAT--GCATTGG 308
consensus_6443#0      TCTACATTGATGGACTTGTTGTTAG---TTCTGATGGA-AATTTGCTTGAT--GCATTGG 746
consensus_6443#2      GCTGAGTAGAGAGGAAGGAGAGCAGAGGTTTTGATTATTGACATGCCAAGTTTGCAATGC 427
                       **   * **  *    *     **   ** ****     *  ***    *  *** ** 

consensus_6443#1      CTGCTGCAATAAAGGTAATTGACACTTAAATTAGACAATATCTTCTACGAAGTTTAGG-T 844
consensus_6443#3      CTGCTGCGATAAAGGTAATTGACACTTAAATTAGACAATATCTTCTACGAAGTTTAGG-T 367
consensus_6443#0      CTGCTGCAATAAAGGTGGCT-----TTGAGTGATACAG-GTATCCCA-AAAGTCAATG-T 798
consensus_6443#2      ATCTACCGGTTTCAGTTTTGCCCACAAAGATGAATTGTTGTCTTCTGAAGCGTACAATCT 487
                       *    *  *    **              * *       * * *      **  *   *

consensus_6443#1      CGTTGCAAATATTTAGTGCAGCCAGGAAA--TGAAGCTA----CAATATTATACTGGTTA 898
consensus_6443#3      CGTTGCAAATATTTAGTGCAGCCAGGAAA--TGAAGCTA----CAATATTATACTGGTTA 421
consensus_6443#0      TTCTCTTAGTGCT-ACAACAGATGAGGAACCTGAAGTTAATGTTAGTGATGAAGAATTTT 857
consensus_6443#2      TACTGTAGCTTTATGCTGAAGTGAAAACGCATGGGATGC----TGGCATGCTGCTGAAAT 543
                         *     *         **          **                           

consensus_6443#1      AAAAGGTTAATAGATTTTATAGAAC----ATTATGATGGTTTTGGAGATTGGAGGGCCCT 954
consensus_6443#3      AAAAGGTTAATAGATTTTATAGAAC----ATTATGATGGTTTTGGAGATTGGAGGGCCCT 477
consensus_6443#0      TGCAATTTGACACCTCCAGTGTGCCTGTTATTGTTACATTGACGAAGGTAGGTAAGCACT 917
consensus_6443#2      GTATGCTTTTTAATTTATTCATAGAT---GCATTTAACTTTTTTGAGATAAGATACGTTT 600
                            **   *  *                  * *   *     ** *  *       *

consensus_6443#1      GCTTTCAAGTT------TTGTAAAAATGGTCTTATGCAA----TGAATCCTCTATCTTGT 1004
consensus_6443#3      GCTTTCAAGTT------TTGTAAAAATGGTCTTATGCAA----TGAATCCTCTATCTTGT 527
consensus_6443#0      ACATTGTGGATGCTACCTCAGAGGAAGAATCTCAGATGAGCTCTGCGGTTTCAGTATCGG 977
consensus_6443#2      AATTTGGTATGCTTG--CTAGATAAATTGTTGTATTGTACTCTCCAAATATAAATATTTG 658
                         **                *  **   *   *    *           *   * *   

consensus_6443#1      TCAATAAAAAGA---AAATCCATGA----------------------------------- 1026
consensus_6443#3      TCAATAAAAAGA---AAATCCATGATTATCTTTGCAAAAAAA------------------ 566
consensus_6443#0      TTAATAGGCATGGTCAAATACGTGGATTGACTAAGAGGGGCGGTGCAGGGTTGGATCCAA 1037
consensus_6443#2      ATGTTTAGAGCA---AGATTCAAAAAAAAA------------------------------ 685
                          *          * ** *                                       

consensus_6443#1      ------------------------------------------------------------
consensus_6443#3      ------------------------------------------------------------
consensus_6443#0      GTGTCATTTTTGATATGATATCTGTGGCTAAGCATGTAAGTCGACAATTCATCTCGGTAT 1097
consensus_6443#2      ------------------------------------------------------------
                                                                                  

consensus_6443#1      ------------------------------------------------------------
consensus_6443#3      ------------------------------------------------------------
consensus_6443#0      TGGATTCGGAGACATTAGCTGCTGAAGCGGCTGAGTAGAGAGGAAGGAGAGCAGAGGTTT 1157
consensus_6443#2      ------------------------------------------------------------
                                                                                  

consensus_6443#1      ------------------------------------------------------------
consensus_6443#3      ------------------------------------------------------------
consensus_6443#0      TGATTATTGACATGCCAAGTTTGCAATGCATCTACCGGTTTCAGTTTTGCTCACAAAGAT 1217
consensus_6443#2      ------------------------------------------------------------
                                                                                  

consensus_6443#1      ------------------------------------------------------------
consensus_6443#3      ------------------------------------------------------------
consensus_6443#0      GAATTGTTGTCTTCTGAAGCGTACAATCTTACTGTAGCTTTATGCTGAAGTGAAAACGCA 1277
consensus_6443#2      ------------------------------------------------------------
                                                                                  

consensus_6443#1      ------------------------------------------------------------
consensus_6443#3      ------------------------------------------------------------
consensus_6443#0      TGGGATGCTGGCATGCTGCTGAAATGTATGCTTTTTAATTTATTCATAGATGCATTTAAC 1337
consensus_6443#2      ------------------------------------------------------------
                                                                                  

consensus_6443#1      ---------------------------------------------------------
consensus_6443#3      ---------------------------------------------------------
consensus_6443#0      TTTTTTGAGATAAGATACGTTTAATTTGGTATGCTTGCTAGATAAAAAAAAAAAAAA 1394
consensus_6443#2      ---------------------------------------------------------
                                                                               




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)