cluster # 6450

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Oryza sativa
cluster # 6450 cluster # 6450 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6450#0 length = 690 sequences # 1

consensus_6450#1 length = 602 sequences # 2
consensus_6450#2 length = 575 sequences # 1

consensusID : consensus_6450#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 690
fasta sequence

                              [TTTTTGAAGATAAATAGTCAGATGGCCTTGATGAATAACCCAATGTTTGACAAACTGTTCAATTTTGCTATTACAAATAGCATTCTTTATACTCTAGCCAGAAAAAAAAATGAAAAATGGATATAAAGTAGGATCATCATATACCAAAGAAGAATCAGGATAGATATATCAAAAATTAGGGATCGATGTGTATGAAAAATAGCTAGACAGTGTTGTTATGGAAGGAATAACTTGTACCTCTTGCGAAGCAAGTGTCGCAGTATGGGCATATAATAATATATAGAAATCAAGTTACCATGAATGAATATGGGGCAATTATGATTACCCAATGTATATACAGATTGCTCCAGCTGTTGCTTTGGATGGGAATGTCATGGGGACTAATCTCAGCGGTAGCCCATAGTTGCTGATGCAACAATAGTAAGCAATCTGCTAATGGAAAACAATCTGCATCCGGAATTCATAAGGTATATACTGCGTGATGTAAAATTGGTATACATACCAATGATCCTCATACCATGAATTGTCTCCTTTAGTGAAGTGTATATACTAAATAAATTTCAATCCGGTTGAACGGAGACGGTAGAAACCTGAAGTAGAGCCGAAACAAAACCAATCCCTCCTTTCTTAATTCTTCGGGAAGGTTGGTGTGTTCGAGGTGAAGGGAGGGTTTGAAAGATTTCAGGGGAG]

[+] EMBL CA761769             [TTTTTGAAGATAAATAGTCAGATGGCCTTGATGAATAACCCAATGTTTGACAAACTGTTCAATTTTGCTATTACAAATAGCATTCTTTATACTCTAGCCAGAAAAAAAAATGAAAAATGGATATAAAGTAGGATCATCATATACCAAAGAAGAATCAGGATAGATATATCAAAAATTAGGGATCGATGTGTATGAAAAATAGCTAGACAGTGTTGTTATGGAAGGAATAACTTGTACCTCTTGCGAAGCAAGTGTCGCAGTATGGGCATATAATAATATATAGAAATCAAGTTACCATGAATGAATATGGGGCAATTATGATTACCCAATGTATATACAGATTGCTCCAGCTGTTGCTTTGGATGGGAATGTCATGGGGACTAATCTCAGCGGTAGCCCATAGTTGCTGATGCAACAATAGTAAGCAATCTGCTAATGGAAAACAATCTGCATCCGGAATTCATAAGGTATATACTGCGTGATGTAAAATTGGTATACATACCAATGATCCTCATACCATGAATTGTCTCCTTTAGTGAAGTGTATATACTAAATAAATTTCAATCCGGTTGAACGGAGACGGTAGAAACCTGAAGTAGAGCCGAAACAAAACCAATCCCTCCTTTCTTAATTCTTCGGGAAGGTTGGTGTGTTCGAGGTGAAGGGAGGGTTTGAAAGATTTCAGGGGAG]




>consensus_6450#0
TTTTTGAAGATAAATAGTCAGATGGCCTTGATGAATAACCCAATGTTTGACAAACTGTTC
AATTTTGCTATTACAAATAGCATTCTTTATACTCTAGCCAGAAAAAAAAATGAAAAATGG
ATATAAAGTAGGATCATCATATACCAAAGAAGAATCAGGATAGATATATCAAAAATTAGG
GATCGATGTGTATGAAAAATAGCTAGACAGTGTTGTTATGGAAGGAATAACTTGTACCTC
TTGCGAAGCAAGTGTCGCAGTATGGGCATATAATAATATATAGAAATCAAGTTACCATGA
ATGAATATGGGGCAATTATGATTACCCAATGTATATACAGATTGCTCCAGCTGTTGCTTT
GGATGGGAATGTCATGGGGACTAATCTCAGCGGTAGCCCATAGTTGCTGATGCAACAATA
GTAAGCAATCTGCTAATGGAAAACAATCTGCATCCGGAATTCATAAGGTATATACTGCGT
GATGTAAAATTGGTATACATACCAATGATCCTCATACCATGAATTGTCTCCTTTAGTGAA
GTGTATATACTAAATAAATTTCAATCCGGTTGAACGGAGACGGTAGAAACCTGAAGTAGA
GCCGAAACAAAACCAATCCCTCCTTTCTTAATTCTTCGGGAAGGTTGGTGTGTTCGAGGT
GAAGGGAGGGTTTGAAAGATTTCAGGGGAG

consensusID : consensus_6450#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 602
fasta sequence

                              [GTCGGATGGCCTTGATGAAAAACCCAATATTTGACAAACTATTCAATTTTGCTATTACAAAGAGCATTCTTTATACTCTAGCCAGAAAAGGAATGAAAAATTAAGTTATATGGGTGTAAAGTTGGATCATCATATACCAAATAAGAATCTGGATAGACATATAAAAAATTAGGGATCAATGTGTATAAAAATAGCTAGACTGTTGTTATGGAAGGAATTACTTGTACCTCTTGCACAGCATGTGTCGCAGGATGGGCATATAATAATATATAGAAATCATGTGACCAAGAATGAATATGAGGCAATTATGATTACCCAATGTATATATAGATTGCTCCAGCAGCAGTGATCCTCATACCATGAATTGTCTCCTTTGGTGAAGTGTATGTACTAAATAAATTTCAATCCTGTTTAACGCTCACAGTAGAAACTTGAAGTAGAGCCGAAACAAAACCAATCCCTCCTTTCTTAATTCTTCGGGAGGTTAATATACACCCCCTTGGGTGTGTTCAAGGTGAAGTCTGAGGTTGAAGATTTCAGGGGAGGACTAAGAACACAAATCGAACGACGTTTCATGGTGAGGAGCTCGACATCCCCCCTTG]

[-] EMBL CF329850             [GTCGGATGGCCTTGATGAAAAACCCAATATTTGACAAACTATTCAATTTTGCTATTACAAAGAGCATTCTTTATACTCTAGCCAGAAAAGGAATGAAAAATTAAGTTATATGGGTGTAAAGTTGGATCATCATATACCAAATAAGAATCTGGATAGACATATAAAAAATTAGGGATCAATGTGTATAAAAATAGCTAGACTGTTGTTATGGAAGGAATTACTTGTACCTCTTGCACAGCATGTGTCGCAGGATGGGC                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CA760717             [  tctttttttTTGATGAAAAACCCAATATTTGACAAACTATTCAATTTTGCTATTACAAAGAGCATTCTTTATACTCTAGCCAGAAAAGAAATGAAAAATTAAGTTATATGGGTGTAAAGTAGGATCATCATATACCAAATAAGAATCTGGATAGACATATAAAAAATTAGGGATCAATGTGTATAAAAATAGCTAGACTGTTGTTATGGAAGGAATTACTTGTACCTCTTGCACAGCATGTGTCGCAGGATGGGCATATAATAATATATAGAAATCATGTGACCAAGAATGAATATGAGGCAATTATGATTACCCAATGTATATATAGATTGCTCCAGCAGCAGTGATCCTCATACCATGAATTGTCTCCTTTGGTGAAGTGTATGTACTAAATAAATTTCAATCCTGTTTAACGCTCACAGTAGAAACTTGAAGTAGAGCCGAAACAAAACCAATCCCTCCTTTCTTAATTCTTCGGGAGGTTAATATACACCCCCTTGGGTGTGTTCAAGGTGAAGTCTGAGGTTGAAGATTTCAGGGGAGGACTAAGAACACAAATCGAACGACGTTTCATGGTGAGGAGCTCGACATCCCCCCTTG]




>consensus_6450#1
GTCGGATGGCCTTGATGAAAAACCCAATATTTGACAAACTATTCAATTTTGCTATTACAA
AGAGCATTCTTTATACTCTAGCCAGAAAAGGAATGAAAAATTAAGTTATATGGGTGTAAA
GTTGGATCATCATATACCAAATAAGAATCTGGATAGACATATAAAAAATTAGGGATCAAT
GTGTATAAAAATAGCTAGACTGTTGTTATGGAAGGAATTACTTGTACCTCTTGCACAGCA
TGTGTCGCAGGATGGGCATATAATAATATATAGAAATCATGTGACCAAGAATGAATATGA
GGCAATTATGATTACCCAATGTATATATAGATTGCTCCAGCAGCAGTGATCCTCATACCA
TGAATTGTCTCCTTTGGTGAAGTGTATGTACTAAATAAATTTCAATCCTGTTTAACGCTC
ACAGTAGAAACTTGAAGTAGAGCCGAAACAAAACCAATCCCTCCTTTCTTAATTCTTCGG
GAGGTTAATATACACCCCCTTGGGTGTGTTCAAGGTGAAGTCTGAGGTTGAAGATTTCAG
GGGAGGACTAAGAACACAAATCGAACGACGTTTCATGGTGAGGAGCTCGACATCCCCCCT
TG

consensusID : consensus_6450#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 575
fasta sequence

                              [CTTGATGAAAAACCCAATATTTGACAAACTATTCAATTTTGCTATTACANAGAGCATTCTTTATACTCTAGCCAGAAAAGAAATGAAAAATTAAGTTATATGGGTGTAAAGTAGGATCATCATATACCAAATAAGAATCTGGATAGACATATAAAAAATTAGGGATCAATGTGTATAAAAATAGCTAGACTGTTGTTATGGAAGGAATTACTTGTACCTCTTGCACAGCATGTGTCGCAGGATGGGCATATAATAATATATAGAAATCATGTGACCAAGAATGAATATGAGGCAATTATGATTACCCAATGTATATATAGATTGCTCCAGCAGCTGTTACAACGATAGTAAGCAATTTGCATCCGGAATTCAGAATTAAAATGAACTATCGGTGCAGGTATGCAGCGTGATGTAAAATTAGTATACATACCAGTGATCCTCATACCATGAATTGTCTCCTTTAGTGAAGTGTATGTACTAAATAAATTTCAATCCTGTTTAACGCTGACGGTAGAAACTTGAAGTAGAGCCGAAACAAAACCAATCCCTCCTTTCTTAATTCTTCGGGAGGTTAA]

[-] EMBL BE040328             [CTTGATGAAAAACCCAATATTTGACAAACTATTCAATTTTGCTATTACANAGAGCATTCTTTATACTCTAGCCAGAAAAGAAATGAAAAATTAAGTTATATGGGTGTAAAGTAGGATCATCATATACCAAATAAGAATCTGGATAGACATATAAAAAATTAGGGATCAATGTGTATAAAAATAGCTAGACTGTTGTTATGGAAGGAATTACTTGTACCTCTTGCACAGCATGTGTCGCAGGATGGGCATATAATAATATATAGAAATCATGTGACCAAGAATGAATATGAGGCAATTATGATTACCCAATGTATATATAGATTGCTCCAGCAGCTGTTACAACGATAGTAAGCAATTTGCATCCGGAATTCAGAATTAAAATGAACTATCGGTGCAGGTATGCAGCGTGATGTAAAATTAGTATACATACCAGTGATCCTCATACCATGAATTGTCTCCTTTAGTGAAGTGTATGTACTAAATAAATTTCAATCCTGTTTAACGCTGACGGTAGAAACTTGAAGTAGAGCCGAAACAAAACCAATCCCTCCTTTCTTAATTCTTCGGGAGGTTAA]




>consensus_6450#2
CTTGATGAAAAACCCAATATTTGACAAACTATTCAATTTTGCTATTACANAGAGCATTCT
TTATACTCTAGCCAGAAAAGAAATGAAAAATTAAGTTATATGGGTGTAAAGTAGGATCAT
CATATACCAAATAAGAATCTGGATAGACATATAAAAAATTAGGGATCAATGTGTATAAAA
ATAGCTAGACTGTTGTTATGGAAGGAATTACTTGTACCTCTTGCACAGCATGTGTCGCAG
GATGGGCATATAATAATATATAGAAATCATGTGACCAAGAATGAATATGAGGCAATTATG
ATTACCCAATGTATATATAGATTGCTCCAGCAGCTGTTACAACGATAGTAAGCAATTTGC
ATCCGGAATTCAGAATTAAAATGAACTATCGGTGCAGGTATGCAGCGTGATGTAAAATTA
GTATACATACCAGTGATCCTCATACCATGAATTGTCTCCTTTAGTGAAGTGTATGTACTA
AATAAATTTCAATCCTGTTTAACGCTGACGGTAGAAACTTGAAGTAGAGCCGAAACAAAA
CCAATCCCTCCTTTCTTAATTCTTCGGGAGGTTAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6450#0      TTTTTGAAGATAAATAGTCAGATGGCCTTGATGAATAACCCAATGTTTGACAAACTGTTC 60
consensus_6450#2      --------------------------CTTGATGAAAAACCCAATATTTGACAAACTATTC 34
consensus_6450#1      ----------------GTCGGATGGCCTTGATGAAAAACCCAATATTTGACAAACTATTC 44
                                                ********* ******** *********** ***

consensus_6450#0      AATTTTGCTATTACAAATAGCATTCTTTATACTCTAGCCAGAAAAAAAAATGAAAA---- 116
consensus_6450#2      AATTTTGCTATTACANAGAGCATTCTTTATACTCTAGCCAGAAAAGAAATGAAAAATTAA 94
consensus_6450#1      AATTTTGCTATTACAAAGAGCATTCTTTATACTCTAGCCAGAAAAGGAATGAAAAATTAA 104
                      *************** * ***************************  **   ****    

consensus_6450#0      -----ATGGATATAAAGTAGGATCATCATATACCAAAGAAGAATCAGGATAGATATATCA 171
consensus_6450#2      GTTATATGGGTGTAAAGTAGGATCATCATATACCAAATAAGAATCTGGATAGACATATAA 154
consensus_6450#1      GTTATATGGGTGTAAAGTTGGATCATCATATACCAAATAAGAATCTGGATAGACATATAA 164
                           **** * ****** ****************** ******* ******* **** *

consensus_6450#0      AAAATTAGGGATCGATGTGTATGAAAAATAGCTAGACAGTGTTGTTATGGAAGGAATAAC 231
consensus_6450#2      AAAATTAGGGATCAATGTGTAT-AAAAATAGCTAGAC--TGTTGTTATGGAAGGAATTAC 211
consensus_6450#1      AAAATTAGGGATCAATGTGTAT-AAAAATAGCTAGAC--TGTTGTTATGGAAGGAATTAC 221
                      ************* ******** **************  ****************** **

consensus_6450#0      TTGTACCTCTTGCGAAGCAAGTGTCGCAGTATGGGCATATAATAATATATAGAAATCAAG 291
consensus_6450#2      TTGTACCTCTTGCACAGCATGTGTCGCAGGATGGGCATATAATAATATATAGAAATCATG 271
consensus_6450#1      TTGTACCTCTTGCACAGCATGTGTCGCAGGATGGGCATATAATAATATATAGAAATCATG 281
                      *************  **** ********* **************************** *

consensus_6450#0      TTACCATGAATGAATATGGGGCAATTATGATTACCCAATGTATATACAGATTGCTCCAGC 351
consensus_6450#2      TGACCAAGAATGAATATGAGGCAATTATGATTACCCAATGTATATATAGATTGCTCCAGC 331
consensus_6450#1      TGACCAAGAATGAATATGAGGCAATTATGATTACCCAATGTATATATAGATTGCTCCAGC 341
                      * **** *********** *************************** *************

consensus_6450#0      TGTTGCTTTGGATGGGAATGTCATGGGGACTAATCTCAGCGGTAGCCCATAGTTGCTGAT 411
consensus_6450#2      AGCTGTT----------------------------------------------------- 338
consensus_6450#1      AGCAGTGATC-------------------CTCATACCATGAATTG--------------- 367
                       *  *                                                       

consensus_6450#0      GCAACAATAGTAAGCAATCTGCTAATGGAAAACAATCTGCATCCGGAAT-TCATAAGGTA 470
consensus_6450#2      ACAACGATAGTAAGCAATTTGCATCCGGAATTCAGAATTAAAATGAACTATCGGTGCAGG 398
consensus_6450#1      TCTCCTTTGGTGA--AGTGTATGTACTAAATA-AATTTCAATCCTGTTTAACGCTCACAG 424
                       *  *  * ** *  * * *        **   *   *  *       *  *        

consensus_6450#0      TATACTGCGTGATGTAAAATTGGTATACATACCAATGATCCTCATACCATGAATTGTCTC 530
consensus_6450#2      TATGCAGCGTGATGTAAAATTAGTATACATACCAGTGATCCTCATACCATGAATTGTCTC 458
consensus_6450#1      TAGA-AACTTGAAGTAGAGCCGAAACA-AAACCAAT--CCCTCCTTTC-----TTAATTC 475
                      **     * *** *** *      * * * **** *   **** *  *     **   **

consensus_6450#0      CTTTAGTGAAGTGTATATACTAAATAAATTTCAATCCGGTTGAACGGAGACGGTAGAAAC 590
consensus_6450#2      CTTTAGTGAAGTGTATGTACTAAATAAATTTCAATCCTGTTTAACGCTGACGGTAGAAAC 518
consensus_6450#1      TTCGGGAGGTTAATATACACCCCCTTGGGTGTGTTCAAGGTGAAGTCTGAGGTTGAAGAT 535
                       *   * *     ***  **    *    *    **  * * **    ** * *  * * 

consensus_6450#0      CTGAAGTAGAGCCGAAACAAAACCAATCCCTCCTTTCTTAATTCTTCGGGAAGGTTGGTG 650
consensus_6450#2      TTGAAGTAGAGCCGAAACAAAACCAATCCCTCCTTTCTTAATTCTTCGGGA-GGTTAA-- 575
consensus_6450#1      TTCAGGGGAGGACTAAG-AACACAAATCGAACGACGTTTCATGGT--GAGGAGCTCGACA 592
                       * * *    * * **  ** ** ****   *     ** **  *  * *  * *     

consensus_6450#0      TGTTCGAGGTGAAGGGAGGGTTTGAAAGATTTCAGGGGAG 690
consensus_6450#2      ----------------------------------------
consensus_6450#1      TCCCCCCTTG------------------------------ 602