cluster # 6457

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Oryza sativa
cluster # 6457 cluster # 6457 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6457#0 length = 580 sequences # 3

consensus_6457#1 length = 476 sequences # 1

consensusID : consensus_6457#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 580
fasta sequence

                              [AACAACCATTCGAAACGAAGGAGTCTTTCTCTAGCTCTAGGGTTAGGGTTTGCGGTCGGAACGGAAGTTAGTCGAATCGGCGCAAATCGATCCGATCCGATCCGCCGTCGATTCGACCACTCCGCCCTCCTTCCTTCCTTCCGACGCAGACGCAATCCATAATACTACTACTCTAGATCGGATCCCCTCCTCTCCCTCCCTCCCTCCCTGCATACGAACAACAAGAGACTACTCCATTACTATATTAGATTGATTGATTAGGGGAGGGGATTGCTGATTAATTTCATCTCTCTAACCCTAGCAGCAGATCCCTCTCTCCCCTAGCAACTAGCAAGCAGAGAGAAGCAGCCGCCTCCATGGATCCTAATCAGATGAT-GGGCCGAAGCTTCCCCATGTGGGCCGCCGCCGACGACCCTTCCGCCCAGCCACCGCCGTTCCTCCCTCCGCCCAACCGCGGCTGGAAGCGTAAGAACCCTAGCACCGCCGCCGGTGGCTACCAGCCCCCCGCCCTCGGCGACCTCCAGGTGCAGAACCGCGCCAAGGCTCGCCGCTGGTTCAAGAACCAAAGCGGAGGCGGNAG]

[+] EMBL CB646154             [AACAACCATTCGAAACGAAGGAGTCTTTCTCTAGCTCTAGGGTTAGGGTTTGCGGTCGGAACGGAAGTTAGTCGAATCGGCGCAAATCGATCCGATCCGATCCGCCGTCGATTCGACCACTCCGCCCTCCTTCCTTCCTTCCGACGCAGACGCAATCCATAATACTACTACTCTAGATCGGATCCCCTCCTCTCCCTCCCTCCCTCCCTGCATACGAACAACAAGAGACTACTCCATTACTATATTAGATTGATTGATTAGGGGAGGGGATTGCTGATTAATTTCATCTCTCTAACCCTAGCAGCAGATCCCTCTCTCCCCTAGCAACTAGCAAGCAGAGAGAAGCAGCCGCCTCCATGGATCCTAATCAGATGAT GGGCCGAAGCTTCCCCATGTGGGCCGCCGCCGACGACCCTTCCGCCCAGCCACCGCCGTTCCTCCCTCCGCCCAACCGCGGCTGGAAGCGTAAGAACCCTAGCACCGCCGCCGGTGGCTACCAGCCCCCCGCCCTCGGCGACCTCCAGGTGCAGAACCGCGCCAAGGCTCGCCGCTGGTTCAAGAACCAAAGCGGAGGCGGNAG]
[+] EMBL C26049               [                  AGGAGTCTTTCTCTAGCTCTAGGGTTAGGGTTTGCGGTCGGAACGGAAGTTAGTCGAATCGGCGCAAATCGATCCGATCCGATCCGCCGTCGATTCGACCACTCCGCCCTCCTTCCTTCCTTCCGACGCAGACGCAATCCATAATACTACTACTCTAGATCGGATCCCCTCCTCTCCCTCCCTCCCTCCCTGCATACGAACAACAAGAGACTACTCCATTACTATATTAGATTGATTGATTAGGGGAGGGGATTGCTGATTAATTTCATCTCTCTAACCCTAGCAGCAGATCCCTCTCTCCCCTAGCAACTAGCAAGCAGAGAGAAGCAGCCGCCTCCATGGATCCTAATCAGATGATGGGGCCGAAGCTTn                                                                                                                                                                                               ]
[+] EMBL CB673088             [                                 GCTCTAGGGTTAGGGTTTGCGGTCGGAACGGAAGTTAGTCGAATCGGCGCAAATCGATCCGATCCGATCCGCCGTCGATTCGACCACTCCGCCCTCCTTCCTTCCTTCCGACGCAGACGCAATCCATAATACTACTACTCTAGATCGGATCCCCTCCTCTCCCTCCCTCCCTCCCTGCATACGAACAACAAGAGACTACTCCATTACTATATTAGATTGATTGATTAGGGGAGGGGATTGCTGATTAATTTCATCTCTCTAACCCTAGCAGCAGATCCCTCTCTCCCCTAGCAACTAGCAAGCAGAGAGAAGCAGCCGCCTCCATGGATCCTAATCAGATGAT GGGCCGAAGCTTCCCCATGTGGGCCGCCGCCGACGACCCTTCCGCCCAGCCACCGCCGTTCCTCCCTCCGCCCAACCGCGGCTGGAAGCGTAAGAACCCTAGCACCGCCGCCGGTGGCTACCAGCCCCCCGCCCTCGGCGACCTCCAGGTGCAGAACCGCGCCAAGGCTCGCCGCTGGTTCAAGAACCA               ]




>consensus_6457#0
AACAACCATTCGAAACGAAGGAGTCTTTCTCTAGCTCTAGGGTTAGGGTTTGCGGTCGGA
ACGGAAGTTAGTCGAATCGGCGCAAATCGATCCGATCCGATCCGCCGTCGATTCGACCAC
TCCGCCCTCCTTCCTTCCTTCCGACGCAGACGCAATCCATAATACTACTACTCTAGATCG
GATCCCCTCCTCTCCCTCCCTCCCTCCCTGCATACGAACAACAAGAGACTACTCCATTAC
TATATTAGATTGATTGATTAGGGGAGGGGATTGCTGATTAATTTCATCTCTCTAACCCTA
GCAGCAGATCCCTCTCTCCCCTAGCAACTAGCAAGCAGAGAGAAGCAGCCGCCTCCATGG
ATCCTAATCAGATGATGGGCCGAAGCTTCCCCATGTGGGCCGCCGCCGACGACCCTTCCG
CCCAGCCACCGCCGTTCCTCCCTCCGCCCAACCGCGGCTGGAAGCGTAAGAACCCTAGCA
CCGCCGCCGGTGGCTACCAGCCCCCCGCCCTCGGCGACCTCCAGGTGCAGAACCGCGCCA
AGGCTCGCCGCTGGTTCAAGAACCAAAGCGGAGGCGGNAG

consensusID : consensus_6457#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 476
fasta sequence

                              [AGGAGTCCTTTTCTAGCTCTAGGGTTAGGGTTTGCGGTCGGAACGGAAGTTAGTCGAATCGGCGCAAATCGATCCGATCCGATCCGCCGTCGATTCGACCACTCCGCCCTCCTTCCTTCCTTCCGACGCAGACGCAATCCATAATACTACTACATTACTATATTAGATTGATTGATTAGGGGAGGGGATTGCTGATTAATTTCATCTCTCTAACCCTAGCAGCAGATCCCTCTCTCCCCTAGCAACTAGCAAGCAGAGAGAAGCAGCCGCCTCCATGGATCCTAATCAGATGATGGGCCGAAGCTTCCCCATGTGGGCCGCCGCCGACGACCCTTCCGCCCAGCCACCGCCGTTCCTCCCTCCGCCCAACCGCGGCTGGAAGCGTAAGAACCCTAGCACCGCCGCCGGTGGCTACCAGCCCCCCGCCCTCGGCGACCTCCAGGTGCAGAACCGCGCCAAGGCTCGCCGCTGGTTCA]

[+] EMBL CB655273             [AGGAGTCCTTTTCTAGCTCTAGGGTTAGGGTTTGCGGTCGGAACGGAAGTTAGTCGAATCGGCGCAAATCGATCCGATCCGATCCGCCGTCGATTCGACCACTCCGCCCTCCTTCCTTCCTTCCGACGCAGACGCAATCCATAATACTACTACATTACTATATTAGATTGATTGATTAGGGGAGGGGATTGCTGATTAATTTCATCTCTCTAACCCTAGCAGCAGATCCCTCTCTCCCCTAGCAACTAGCAAGCAGAGAGAAGCAGCCGCCTCCATGGATCCTAATCAGATGATGGGCCGAAGCTTCCCCATGTGGGCCGCCGCCGACGACCCTTCCGCCCAGCCACCGCCGTTCCTCCCTCCGCCCAACCGCGGCTGGAAGCGTAAGAACCCTAGCACCGCCGCCGGTGGCTACCAGCCCCCCGCCCTCGGCGACCTCCAGGTGCAGAACCGCGCCAAGGCTCGCCGCTGGTTCA]




>consensus_6457#1
AGGAGTCCTTTTCTAGCTCTAGGGTTAGGGTTTGCGGTCGGAACGGAAGTTAGTCGAATC
GGCGCAAATCGATCCGATCCGATCCGCCGTCGATTCGACCACTCCGCCCTCCTTCCTTCC
TTCCGACGCAGACGCAATCCATAATACTACTACATTACTATATTAGATTGATTGATTAGG
GGAGGGGATTGCTGATTAATTTCATCTCTCTAACCCTAGCAGCAGATCCCTCTCTCCCCT
AGCAACTAGCAAGCAGAGAGAAGCAGCCGCCTCCATGGATCCTAATCAGATGATGGGCCG
AAGCTTCCCCATGTGGGCCGCCGCCGACGACCCTTCCGCCCAGCCACCGCCGTTCCTCCC
TCCGCCCAACCGCGGCTGGAAGCGTAAGAACCCTAGCACCGCCGCCGGTGGCTACCAGCC
CCCCGCCCTCGGCGACCTCCAGGTGCAGAACCGCGCCAAGGCTCGCCGCTGGTTCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6457#0      AACAACCATTCGAAACGAAGGAGTCTTTCTCTAGCTCTAGGGTTAGGGTTTGCGGTCGGA 60
consensus_6457#1      ------------------AGGAGTCCTTTTCTAGCTCTAGGGTTAGGGTTTGCGGTCGGA 42
                                        ******* ** *******************************

consensus_6457#0      ACGGAAGTTAGTCGAATCGGCGCAAATCGATCCGATCCGATCCGCCGTCGATTCGACCAC 120
consensus_6457#1      ACGGAAGTTAGTCGAATCGGCGCAAATCGATCCGATCCGATCCGCCGTCGATTCGACCAC 102
                      ************************************************************

consensus_6457#0      TCCGCCCTCCTTCCTTCCTTCCGACGCAGACGCAATCCATAATACTACTACTCTAGATCG 180
consensus_6457#1      TCCGCCCTCCTTCCTTCCTTCCGACGCAGACGCAATCCATAATACTACTAC--------- 153
                      ***************************************************         

consensus_6457#0      GATCCCCTCCTCTCCCTCCCTCCCTCCCTGCATACGAACAACAAGAGACTACTCCATTAC 240
consensus_6457#1      -------------------------------------------------------ATTAC 158
                                                                             *****

consensus_6457#0      TATATTAGATTGATTGATTAGGGGAGGGGATTGCTGATTAATTTCATCTCTCTAACCCTA 300
consensus_6457#1      TATATTAGATTGATTGATTAGGGGAGGGGATTGCTGATTAATTTCATCTCTCTAACCCTA 218
                      ************************************************************

consensus_6457#0      GCAGCAGATCCCTCTCTCCCCTAGCAACTAGCAAGCAGAGAGAAGCAGCCGCCTCCATGG 360
consensus_6457#1      GCAGCAGATCCCTCTCTCCCCTAGCAACTAGCAAGCAGAGAGAAGCAGCCGCCTCCATGG 278
                      ************************************************************

consensus_6457#0      ATCCTAATCAGATGATGGGCCGAAGCTTCCCCATGTGGGCCGCCGCCGACGACCCTTCCG 420
consensus_6457#1      ATCCTAATCAGATGATGGGCCGAAGCTTCCCCATGTGGGCCGCCGCCGACGACCCTTCCG 338
                      ************************************************************

consensus_6457#0      CCCAGCCACCGCCGTTCCTCCCTCCGCCCAACCGCGGCTGGAAGCGTAAGAACCCTAGCA 480
consensus_6457#1      CCCAGCCACCGCCGTTCCTCCCTCCGCCCAACCGCGGCTGGAAGCGTAAGAACCCTAGCA 398
                      ************************************************************

consensus_6457#0      CCGCCGCCGGTGGCTACCAGCCCCCCGCCCTCGGCGACCTCCAGGTGCAGAACCGCGCCA 540
consensus_6457#1      CCGCCGCCGGTGGCTACCAGCCCCCCGCCCTCGGCGACCTCCAGGTGCAGAACCGCGCCA 458
                      ************************************************************

consensus_6457#0      AGGCTCGCCGCTGGTTCAAGAACCAAAGCGGAGGCGGNAG 580
consensus_6457#1      AGGCTCGCCGCTGGTTCA---------------------- 476
                      ******************