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Oryza sativa
cluster # 6462 cluster # 6462       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6462#0 length = 1079 sequences # 2  
consensus_6462#1 length = 964 sequences # 2  

consensusID : consensus_6462#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1079
fasta sequence
                              [CTTTTTGTTACTCCAAGCTTTTTCCTGTAGTTTTCTTCTCCTCTCTCCACATTGCCACCACCAAATCAGCTGAGATCTCACTTTTGATTCGGGGACTGTCTTTAAGTAGAGGCAGCCAAGCTGAGATATCCTCCTGTGTGTTCTCCCGTTCTTGGCATTCGGCAATAGGTCCCATGAAGCCATGATTCCATCAGGAGAGGCACATCAAGACGGTTGCTAGTTTCTGCATTCAATTCAGGGAGGACAATTTGCAGGGTGCCGGTGCTAATCTGAACTCTGAAGGGAGGAGACGTGCTGGTTGCAACCTGCAAGAGGCCAAGAAGCGGCCGAGGCAGGCAGCAATGAGCGGGAGGTCGAGGCCGTGGCCAGGGGACCCGTCGCCGGCGCCTCCGCAGCCGCCGGTCGTCGCCGCAGCGGCGGACGCGGGCGGCGAGGCGTCGACGTCGCTCAGGGACTTCGGCACGTCGATGGACGCCATCTCGTTCGGGTTCGCGGCCACCGCCATCCTCGTCTCCATGTTCCTCCTCATGGCCATCTTCGAGCACCTCATCAAGCCCCACGTCTTCCCGCCCCTCGCCAGCGCGGCGCTCCGCCCCGCGCGCCGCCGCCACGGCGTCTCTCCCGCCGGCAAGCTCCGGAGCCCTCCCATGGTACGTAGTACGTCGCCAACCACTTACACAGAGCGAAATGATCCAATGTTGAGGTGTTTGCTGCTCTGAAATTGTTGCAGGTGGAGACGGTGCTGCAGGCGGCGGACCTGTCGGTGTTGATGCCGGGGCAACGGTACCCGACGTACCTGGCGCAGCCGGC-GCCGCTTCCGCCGGCGCCGTGCCCGAGGGAAGGGGTGCACTGGCCGCCGCACGACCACGACGTCCACCACTCCTACATGCCGCCATGATCGAGATCTCGCGTACAATGTTGCAGTGGAACAACATGTTAGAGACACACGCTGTCAAACCAACCAACCGACCGATCGATCGATGGATCGAATCCTGTTGCTGATTGAA-TTGCTGTATAGCGGAGACGCTGTAAATAAT-AAACGCAGGGGAGAGTGACAAGAGTTGTTGGATATNAAAAAA]

[+] EMBL AK061119             [CTTTTTGTTACTCCAAGCTTTTTCCTGTAGTTTTCTTCTCCTCTCTCCACATTGCCACCACCAAATCAGCTGAGATCTCACTTTTGATTCGGGGACTGTCTTTAAGTAGAGGCAGCCAAGCTGAGATATCCTCCTGTGTGTTCTCCCGTTCTTGGCATTCGGCAATAGGTCCCATGAAGCCATGATTCCATCAGGAGAGGCACATCAAGACGGTTGCTAGTTTCTGCATTCAATTCAGGGAGGACAATTTGCAGGGTGCCGGTGCTAATCTGAACTCTGAAGGGAGGAGACGTGCTGGTTGCAACCTGCAAGAGGCCAAGAAGCGGCCGAGGCAGGCAGCAATGAGCGGGAGGTCGAGGCCGTGGCCAGGGGACCCGTCGCCGGCGCCTCCGCAGCCGCCGGTCGTCGCCGCAGCGGCGGACGCGGGCGGCGAGGCGTCGACGTCGCTCAGGGACTTCGGCACGTCGATGGACGCCATCTCGTTCGGGTTCGCGGCCACCGCCATCCTCGTCTCCATGTTCCTCCTCATGGCCATCTTCGAGCACCTCATCAAGCCCCACGTCTTCCCGCCCCTCGCCAGCGCGGCGCTCCGCCCCGCGCGCCGCCGCCACGGCGTCTCTCCCGCCGGCAAGCTCCGGAGCCCTCCCATGGTACGTAGTACGTCGCCAACCACTTACACAGAGCGAAATGATCCAATGTTGAGGTGTTTGCTGCTCTGAAATTGTTGCAGGTGGAGACGGTGCTGCAGGCGGCGGACCTGTCGGTGTTGATGCCGGGGCAACGGTACCCGACGTACCTGGCGCAGCCGGC GCCGCTTCCGCCGGCGCCGTGCCCGAGGGAAGGGGTGCACTGGCCGCCGCACGACCACGACGTCCACCACTCCTACATGCCGCCATGATCGAGATCTCGCGTACAATGTTGCAGTGGAACAACATGTTAGAGACACACGCTGTCAAACCAACCAACCGACCGATCGATCGATGGATCGAATCCTGTTGCTGATTGAA TTGCTGTATAGCGGAGACGCTGTAAATAAT AAACGCAGGGGAGAGTGACAAGAGT                 ]
[+] EMBL AU058082             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     CGGGGCAACGGTACCCGACGTACCTGGCGCA  CGGCNGCCGCTTCCGCCGGCGCCGTGCCCGAGGGAAGGGGTGCACTGGCCGCCGCACGACCATGACGTCCACCACTCCTACATGCCGCCATGATCGAGATCTCGCGTACAATGTTGCAGTGGAACAACATGTTAGAGACACACGCTGTCAAACCAACCAACCGACCGATCGATCGATGGATCGAATCCTGTTGCTGATTGAATTTGCTGTATAGCGGAGACGCTGTAAATAATAAAACGCAGGGGAGAGTTACAAGAGTTGTTGGATATNAAAAAA]


>consensus_6462#0 CTTTTTGTTACTCCAAGCTTTTTCCTGTAGTTTTCTTCTCCTCTCTCCACATTGCCACCA CCAAATCAGCTGAGATCTCACTTTTGATTCGGGGACTGTCTTTAAGTAGAGGCAGCCAAG CTGAGATATCCTCCTGTGTGTTCTCCCGTTCTTGGCATTCGGCAATAGGTCCCATGAAGC CATGATTCCATCAGGAGAGGCACATCAAGACGGTTGCTAGTTTCTGCATTCAATTCAGGG AGGACAATTTGCAGGGTGCCGGTGCTAATCTGAACTCTGAAGGGAGGAGACGTGCTGGTT GCAACCTGCAAGAGGCCAAGAAGCGGCCGAGGCAGGCAGCAATGAGCGGGAGGTCGAGGC CGTGGCCAGGGGACCCGTCGCCGGCGCCTCCGCAGCCGCCGGTCGTCGCCGCAGCGGCGG ACGCGGGCGGCGAGGCGTCGACGTCGCTCAGGGACTTCGGCACGTCGATGGACGCCATCT CGTTCGGGTTCGCGGCCACCGCCATCCTCGTCTCCATGTTCCTCCTCATGGCCATCTTCG AGCACCTCATCAAGCCCCACGTCTTCCCGCCCCTCGCCAGCGCGGCGCTCCGCCCCGCGC GCCGCCGCCACGGCGTCTCTCCCGCCGGCAAGCTCCGGAGCCCTCCCATGGTACGTAGTA CGTCGCCAACCACTTACACAGAGCGAAATGATCCAATGTTGAGGTGTTTGCTGCTCTGAA ATTGTTGCAGGTGGAGACGGTGCTGCAGGCGGCGGACCTGTCGGTGTTGATGCCGGGGCA ACGGTACCCGACGTACCTGGCGCAGCCGGCGCCGCTTCCGCCGGCGCCGTGCCCGAGGGA AGGGGTGCACTGGCCGCCGCACGACCACGACGTCCACCACTCCTACATGCCGCCATGATC GAGATCTCGCGTACAATGTTGCAGTGGAACAACATGTTAGAGACACACGCTGTCAAACCA ACCAACCGACCGATCGATCGATGGATCGAATCCTGTTGCTGATTGAATTGCTGTATAGCG GAGACGCTGTAAATAATAAACGCAGGGGAGAGTGACAAGAGTTGTTGGATATNAAAAAA



consensusID : consensus_6462#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 964
fasta sequence
                              [CTTTTTGTTACTCCAAGCTTTTTCCTGTAGTTTTCTTCTCCTCTCTCCACATTGCCACCACCAAATCAGCTGAGATCTCACTTTTGATTCGGGGACTGTCTTTAAGTAGAGGCAGCCAAGCTGAGATATCCTCCTGTGTGTTCTCCCGTTCTTGGCATTCGGCAATAGGTCCCATGAAGCCATGATTCCATCAGGAGAGGCACATCAAGACGGTTGCTAGTTTCTGCATTCAATTCAGGGAGGACAATTTGCAGGGTGCCGGTGCTAATCTGAACTCTGAAGGGAGGAGACGTGCTGGTTGCAACCTGCAAGAGGCCAAGAAGCGGCCGAGGCAGGCAGCAATGAGCGGGAGGTCGAGGCCGTGGCCAGGGGACCCGTCGCCGGCGCCTCCGCAGCCGCCGGTCGTCGCCGCAGCGGCGGACGCGGGCGGCGAGGCGTCGACGTCGCTCAGGGACTTCGGCACGTCGATGGACGCCATCTCGTTCGGGTTCGCGGCCACCGCCATCCTCGTCTCCATGTTCCTCCTCATGGCCATCTTCGAGCACCTCATCAAGCCCCACGTCTTCCCGCCCCTCGCCAGCGCGGCGCTCCGCCCCGCGCGCCGCCGCCACGGCGTCTCTCCCGCCGGCAAGCTCCGGAGCCCTCCCATGGTGGAGACGGTGCTGCAGGCGGCGGACCTGTCGGTGTTGATGCCGGGGCAACGGTACCCGACGTACCTGGCGCAGCCGGCGCCGCTTCCGCCGGCGCCGTGCCCGAGGGAAGGGGTGCACTGGCCGCCGCACGACCACGACGTCCACCACTCCTACATGCCGCCATGATCGAGATCTCGCGTACAATGTTGCAGTGGAACAACATGTTAGAGACACACGCTGTCAAACCAACCAACCGACCGATCGATCGATGGATCGAATCCTGTTGCTGATTGAATTGCTGTATAGCGGAGACGCTGTAAATAATAAACGCA]

[+] EMBL AK060162             [CTTTTTGTTACTCCAAGCTTTTTCCTGTAGTTTTCTTCTCCTCTCTCCACATTGCCACCACCAAATCAGCTGAGATCTCACTTTTGATTCGGGGACTGTCTTTAAGTAGAGGCAGCCAAGCTGAGATATCCTCCTGTGTGTTCTCCCGTTCTTGGCATTCGGCAATAGGTCCCATGAAGCCATGATTCCATCAGGAGAGGCACATCAAGACGGTTGCTAGTTTCTGCATTCAATTCAGGGAGGACAATTTGCAGGGTGCCGGTGCTAATCTGAACTCTGAAGGGAGGAGACGTGCTGGTTGCAACCTGCAAGAGGCCAAGAAGCGGCCGAGGCAGGCAGCAATGAGCGGGAGGTCGAGGCCGTGGCCAGGGGACCCGTCGCCGGCGCCTCCGCAGCCGCCGGTCGTCGCCGCAGCGGCGGACGCGGGCGGCGAGGCGTCGACGTCGCTCAGGGACTTCGGCACGTCGATGGACGCCATCTCGTTCGGGTTCGCGGCCACCGCCATCCTCGTCTCCATGTTCCTCCTCATGGCCATCTTCGAGCACCTCATCAAGCCCCACGTCTTCCCGCCCCTCGCCAGCGCGGCGCTCCGCCCCGCGCGCCGCCGCCACGGCGTCTCTCCCGCCGGCAAGCTCCGGAGCCCTCCCATGGTGGAGACGGTGCTGCAGGCGGCGGACCTGTCGGTGTTGATGCCGGGGCAACGGTACCCGACGTACCTGGCGCAGCCGGCGCCGCTTCCGCCGGCGCCGTGCCCGAGGGAAGGGGTGCACTGGCCGCCGCACGACCACGACGTCCACCACTCCTACATGCCGCCATGATCGAGATCTCGCGTACAATGTTGCAGTGGAACAACATGTTAGAGACACACGCTGTCAAACCAACCAACCGACCGATCGATCGATGGATCGAATCCTGTTGCTGATTGAATTGCTGTATAGCGGAGACGCTGTAAATAATAAACGCA]
[+] EMBL AK104289             [CTTTTTGTTACTCCAAGCTTTTTCCTGTAGTTTTCTTCTCCTCTCTCCACATTGCCACCACCAAATCAGCTGAGATCTCACTTTTGATTCGGGGACTGTCTTTAAGTAGAGGCAGCCAAGCTGAGATATCCTCCTGTGTGTTCTCCCGTTCTTGGCATTCGGCAATAGGTCCCATGAAGCCATGATTCCATCAGGAGAGGCACATCAAGACGGTTGCTAGTTTCTGCATTCAATTCAGGGAGGACAATTTGCAGGGTGCCGGTGCTAATCTGAACTCTGAAGGGAGGAGACGTGCTGGTTGCAACCTGCAAGAGGCCAAGAAGCGGCCGAGGCAGGCAGCAATGAGCGGGAGGTCGAGGCCGTGGCCAGGGGACCCGTCGCCGGCGCCTCCGCAGCCGCCGGTCGTCGCCGCAGCGGCGGACGCGGGCGGCGAGGCGTCGACGTCGCTCAGGGACTTCGGCACGTCGATGGACGCCATCTCGTTCGGGTTCGCGGCCACCGCCATCCTCGTCTCCATGTTCCTCCTCATGGCCATCTTCGAGCACCTCATCAAGCCCCACGTCTTCCCGCCCCTCGCCAGCGCGGCGCTCCGCCCCGCGCGCCGCCGCCACGGCGTCTCTCCCGCCGGCAAGCTCCGGAGCCCTCCCATGGTGGAGACGGTGCTGCAGGCGGCGGACCTGTCGGTGTTGATGCCGGGGCAACGGTACCCGACGTACCTGGCGCAGCCGGCGCCGCTTCCGCCGGCGCCGTGCCCGAGGGAAGGGGTGCACTGGCCGCCGCACGACCACGACGTCCACCACTCCTACATGCCGCCATGATCGAGATCTCGCGTACAATGTTGCAGTGGAACAACATGTTAGAGACACACGCTGTCAAACCAACCAACCGACCGATCGATCGATGGATCGAATCCTGTTGCTGATTGAATTGCTGTATAGCGGAGACGCTGTAAATAATAAACGCA]


>consensus_6462#1 CTTTTTGTTACTCCAAGCTTTTTCCTGTAGTTTTCTTCTCCTCTCTCCACATTGCCACCA CCAAATCAGCTGAGATCTCACTTTTGATTCGGGGACTGTCTTTAAGTAGAGGCAGCCAAG CTGAGATATCCTCCTGTGTGTTCTCCCGTTCTTGGCATTCGGCAATAGGTCCCATGAAGC CATGATTCCATCAGGAGAGGCACATCAAGACGGTTGCTAGTTTCTGCATTCAATTCAGGG AGGACAATTTGCAGGGTGCCGGTGCTAATCTGAACTCTGAAGGGAGGAGACGTGCTGGTT GCAACCTGCAAGAGGCCAAGAAGCGGCCGAGGCAGGCAGCAATGAGCGGGAGGTCGAGGC CGTGGCCAGGGGACCCGTCGCCGGCGCCTCCGCAGCCGCCGGTCGTCGCCGCAGCGGCGG ACGCGGGCGGCGAGGCGTCGACGTCGCTCAGGGACTTCGGCACGTCGATGGACGCCATCT CGTTCGGGTTCGCGGCCACCGCCATCCTCGTCTCCATGTTCCTCCTCATGGCCATCTTCG AGCACCTCATCAAGCCCCACGTCTTCCCGCCCCTCGCCAGCGCGGCGCTCCGCCCCGCGC GCCGCCGCCACGGCGTCTCTCCCGCCGGCAAGCTCCGGAGCCCTCCCATGGTGGAGACGG TGCTGCAGGCGGCGGACCTGTCGGTGTTGATGCCGGGGCAACGGTACCCGACGTACCTGG CGCAGCCGGCGCCGCTTCCGCCGGCGCCGTGCCCGAGGGAAGGGGTGCACTGGCCGCCGC ACGACCACGACGTCCACCACTCCTACATGCCGCCATGATCGAGATCTCGCGTACAATGTT GCAGTGGAACAACATGTTAGAGACACACGCTGTCAAACCAACCAACCGACCGATCGATCG ATGGATCGAATCCTGTTGCTGATTGAATTGCTGTATAGCGGAGACGCTGTAAATAATAAA CGCA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6462#0      CTTTTTGTTACTCCAAGCTTTTTCCTGTAGTTTTCTTCTCCTCTCTCCACATTGCCACCA 60
consensus_6462#1      CTTTTTGTTACTCCAAGCTTTTTCCTGTAGTTTTCTTCTCCTCTCTCCACATTGCCACCA 60
                      ************************************************************

consensus_6462#0      CCAAATCAGCTGAGATCTCACTTTTGATTCGGGGACTGTCTTTAAGTAGAGGCAGCCAAG 120
consensus_6462#1      CCAAATCAGCTGAGATCTCACTTTTGATTCGGGGACTGTCTTTAAGTAGAGGCAGCCAAG 120
                      ************************************************************

consensus_6462#0      CTGAGATATCCTCCTGTGTGTTCTCCCGTTCTTGGCATTCGGCAATAGGTCCCATGAAGC 180
consensus_6462#1      CTGAGATATCCTCCTGTGTGTTCTCCCGTTCTTGGCATTCGGCAATAGGTCCCATGAAGC 180
                      ************************************************************

consensus_6462#0      CATGATTCCATCAGGAGAGGCACATCAAGACGGTTGCTAGTTTCTGCATTCAATTCAGGG 240
consensus_6462#1      CATGATTCCATCAGGAGAGGCACATCAAGACGGTTGCTAGTTTCTGCATTCAATTCAGGG 240
                      ************************************************************

consensus_6462#0      AGGACAATTTGCAGGGTGCCGGTGCTAATCTGAACTCTGAAGGGAGGAGACGTGCTGGTT 300
consensus_6462#1      AGGACAATTTGCAGGGTGCCGGTGCTAATCTGAACTCTGAAGGGAGGAGACGTGCTGGTT 300
                      ************************************************************

consensus_6462#0      GCAACCTGCAAGAGGCCAAGAAGCGGCCGAGGCAGGCAGCAATGAGCGGGAGGTCGAGGC 360
consensus_6462#1      GCAACCTGCAAGAGGCCAAGAAGCGGCCGAGGCAGGCAGCAATGAGCGGGAGGTCGAGGC 360
                      ************************************************************

consensus_6462#0      CGTGGCCAGGGGACCCGTCGCCGGCGCCTCCGCAGCCGCCGGTCGTCGCCGCAGCGGCGG 420
consensus_6462#1      CGTGGCCAGGGGACCCGTCGCCGGCGCCTCCGCAGCCGCCGGTCGTCGCCGCAGCGGCGG 420
                      ************************************************************

consensus_6462#0      ACGCGGGCGGCGAGGCGTCGACGTCGCTCAGGGACTTCGGCACGTCGATGGACGCCATCT 480
consensus_6462#1      ACGCGGGCGGCGAGGCGTCGACGTCGCTCAGGGACTTCGGCACGTCGATGGACGCCATCT 480
                      ************************************************************

consensus_6462#0      CGTTCGGGTTCGCGGCCACCGCCATCCTCGTCTCCATGTTCCTCCTCATGGCCATCTTCG 540
consensus_6462#1      CGTTCGGGTTCGCGGCCACCGCCATCCTCGTCTCCATGTTCCTCCTCATGGCCATCTTCG 540
                      ************************************************************

consensus_6462#0      AGCACCTCATCAAGCCCCACGTCTTCCCGCCCCTCGCCAGCGCGGCGCTCCGCCCCGCGC 600
consensus_6462#1      AGCACCTCATCAAGCCCCACGTCTTCCCGCCCCTCGCCAGCGCGGCGCTCCGCCCCGCGC 600
                      ************************************************************

consensus_6462#0      GCCGCCGCCACGGCGTCTCTCCCGCCGGCAAGCTCCGGAGCCCTCCCATGGTACGTAGTA 660
consensus_6462#1      GCCGCCGCCACGGCGTCTCTCCCGCCGGCAAGCTCCGGAGCCCTCCCATGGT-------- 652
                      ****************************************************        

consensus_6462#0      CGTCGCCAACCACTTACACAGAGCGAAATGATCCAATGTTGAGGTGTTTGCTGCTCTGAA 720
consensus_6462#1      ------------------------------------------------------------
                                                                                  

consensus_6462#0      ATTGTTGCAGGTGGAGACGGTGCTGCAGGCGGCGGACCTGTCGGTGTTGATGCCGGGGCA 780
consensus_6462#1      ------------GGAGACGGTGCTGCAGGCGGCGGACCTGTCGGTGTTGATGCCGGGGCA 700
                                  ************************************************

consensus_6462#0      ACGGTACCCGACGTACCTGGCGCAGCCGGCGCCGCTTCCGCCGGCGCCGTGCCCGAGGGA 840
consensus_6462#1      ACGGTACCCGACGTACCTGGCGCAGCCGGCGCCGCTTCCGCCGGCGCCGTGCCCGAGGGA 760
                      ************************************************************

consensus_6462#0      AGGGGTGCACTGGCCGCCGCACGACCACGACGTCCACCACTCCTACATGCCGCCATGATC 900
consensus_6462#1      AGGGGTGCACTGGCCGCCGCACGACCACGACGTCCACCACTCCTACATGCCGCCATGATC 820
                      ************************************************************

consensus_6462#0      GAGATCTCGCGTACAATGTTGCAGTGGAACAACATGTTAGAGACACACGCTGTCAAACCA 960
consensus_6462#1      GAGATCTCGCGTACAATGTTGCAGTGGAACAACATGTTAGAGACACACGCTGTCAAACCA 880
                      ************************************************************

consensus_6462#0      ACCAACCGACCGATCGATCGATGGATCGAATCCTGTTGCTGATTGAATTGCTGTATAGCG 1020
consensus_6462#1      ACCAACCGACCGATCGATCGATGGATCGAATCCTGTTGCTGATTGAATTGCTGTATAGCG 940
                      ************************************************************

consensus_6462#0      GAGACGCTGTAAATAATAAACGCAGGGGAGAGTGACAAGAGTTGTTGGATATNAAAAAA 1079
consensus_6462#1      GAGACGCTGTAAATAATAAACGCA----------------------------------- 964
                      ************************                                   




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)