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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6462#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1079 fasta sequence
[CTTTTTGTTACTCCAAGCTTTTTCCTGTAGTTTTCTTCTCCTCTCTCCACATTGCCACCACCAAATCAGCTGAGATCTCACTTTTGATTCGGGGACTGTCTTTAAGTAGAGGCAGCCAAGCTGAGATATCCTCCTGTGTGTTCTCCCGTTCTTGGCATTCGGCAATAGGTCCCATGAAGCCATGATTCCATCAGGAGAGGCACATCAAGACGGTTGCTAGTTTCTGCATTCAATTCAGGGAGGACAATTTGCAGGGTGCCGGTGCTAATCTGAACTCTGAAGGGAGGAGACGTGCTGGTTGCAACCTGCAAGAGGCCAAGAAGCGGCCGAGGCAGGCAGCAATGAGCGGGAGGTCGAGGCCGTGGCCAGGGGACCCGTCGCCGGCGCCTCCGCAGCCGCCGGTCGTCGCCGCAGCGGCGGACGCGGGCGGCGAGGCGTCGACGTCGCTCAGGGACTTCGGCACGTCGATGGACGCCATCTCGTTCGGGTTCGCGGCCACCGCCATCCTCGTCTCCATGTTCCTCCTCATGGCCATCTTCGAGCACCTCATCAAGCCCCACGTCTTCCCGCCCCTCGCCAGCGCGGCGCTCCGCCCCGCGCGCCGCCGCCACGGCGTCTCTCCCGCCGGCAAGCTCCGGAGCCCTCCCATGGTACGTAGTACGTCGCCAACCACTTACACAGAGCGAAATGATCCAATGTTGAGGTGTTTGCTGCTCTGAAATTGTTGCAGGTGGAGACGGTGCTGCAGGCGGCGGACCTGTCGGTGTTGATGCCGGGGCAACGGTACCCGACGTACCTGGCGCAGCCGGC-GCCGCTTCCGCCGGCGCCGTGCCCGAGGGAAGGGGTGCACTGGCCGCCGCACGACCACGACGTCCACCACTCCTACATGCCGCCATGATCGAGATCTCGCGTACAATGTTGCAGTGGAACAACATGTTAGAGACACACGCTGTCAAACCAACCAACCGACCGATCGATCGATGGATCGAATCCTGTTGCTGATTGAA-TTGCTGTATAGCGGAGACGCTGTAAATAAT-AAACGCAGGGGAGAGTGACAAGAGTTGTTGGATATNAAAAAA]
[+] EMBL AK061119 [CTTTTTGTTACTCCAAGCTTTTTCCTGTAGTTTTCTTCTCCTCTCTCCACATTGCCACCACCAAATCAGCTGAGATCTCACTTTTGATTCGGGGACTGTCTTTAAGTAGAGGCAGCCAAGCTGAGATATCCTCCTGTGTGTTCTCCCGTTCTTGGCATTCGGCAATAGGTCCCATGAAGCCATGATTCCATCAGGAGAGGCACATCAAGACGGTTGCTAGTTTCTGCATTCAATTCAGGGAGGACAATTTGCAGGGTGCCGGTGCTAATCTGAACTCTGAAGGGAGGAGACGTGCTGGTTGCAACCTGCAAGAGGCCAAGAAGCGGCCGAGGCAGGCAGCAATGAGCGGGAGGTCGAGGCCGTGGCCAGGGGACCCGTCGCCGGCGCCTCCGCAGCCGCCGGTCGTCGCCGCAGCGGCGGACGCGGGCGGCGAGGCGTCGACGTCGCTCAGGGACTTCGGCACGTCGATGGACGCCATCTCGTTCGGGTTCGCGGCCACCGCCATCCTCGTCTCCATGTTCCTCCTCATGGCCATCTTCGAGCACCTCATCAAGCCCCACGTCTTCCCGCCCCTCGCCAGCGCGGCGCTCCGCCCCGCGCGCCGCCGCCACGGCGTCTCTCCCGCCGGCAAGCTCCGGAGCCCTCCCATGGTACGTAGTACGTCGCCAACCACTTACACAGAGCGAAATGATCCAATGTTGAGGTGTTTGCTGCTCTGAAATTGTTGCAGGTGGAGACGGTGCTGCAGGCGGCGGACCTGTCGGTGTTGATGCCGGGGCAACGGTACCCGACGTACCTGGCGCAGCCGGC GCCGCTTCCGCCGGCGCCGTGCCCGAGGGAAGGGGTGCACTGGCCGCCGCACGACCACGACGTCCACCACTCCTACATGCCGCCATGATCGAGATCTCGCGTACAATGTTGCAGTGGAACAACATGTTAGAGACACACGCTGTCAAACCAACCAACCGACCGATCGATCGATGGATCGAATCCTGTTGCTGATTGAA TTGCTGTATAGCGGAGACGCTGTAAATAAT AAACGCAGGGGAGAGTGACAAGAGT ]
[+] EMBL AU058082 [ CGGGGCAACGGTACCCGACGTACCTGGCGCA CGGCNGCCGCTTCCGCCGGCGCCGTGCCCGAGGGAAGGGGTGCACTGGCCGCCGCACGACCATGACGTCCACCACTCCTACATGCCGCCATGATCGAGATCTCGCGTACAATGTTGCAGTGGAACAACATGTTAGAGACACACGCTGTCAAACCAACCAACCGACCGATCGATCGATGGATCGAATCCTGTTGCTGATTGAATTTGCTGTATAGCGGAGACGCTGTAAATAATAAAACGCAGGGGAGAGTTACAAGAGTTGTTGGATATNAAAAAA]
consensusID : consensus_6462#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 964 fasta sequence
[CTTTTTGTTACTCCAAGCTTTTTCCTGTAGTTTTCTTCTCCTCTCTCCACATTGCCACCACCAAATCAGCTGAGATCTCACTTTTGATTCGGGGACTGTCTTTAAGTAGAGGCAGCCAAGCTGAGATATCCTCCTGTGTGTTCTCCCGTTCTTGGCATTCGGCAATAGGTCCCATGAAGCCATGATTCCATCAGGAGAGGCACATCAAGACGGTTGCTAGTTTCTGCATTCAATTCAGGGAGGACAATTTGCAGGGTGCCGGTGCTAATCTGAACTCTGAAGGGAGGAGACGTGCTGGTTGCAACCTGCAAGAGGCCAAGAAGCGGCCGAGGCAGGCAGCAATGAGCGGGAGGTCGAGGCCGTGGCCAGGGGACCCGTCGCCGGCGCCTCCGCAGCCGCCGGTCGTCGCCGCAGCGGCGGACGCGGGCGGCGAGGCGTCGACGTCGCTCAGGGACTTCGGCACGTCGATGGACGCCATCTCGTTCGGGTTCGCGGCCACCGCCATCCTCGTCTCCATGTTCCTCCTCATGGCCATCTTCGAGCACCTCATCAAGCCCCACGTCTTCCCGCCCCTCGCCAGCGCGGCGCTCCGCCCCGCGCGCCGCCGCCACGGCGTCTCTCCCGCCGGCAAGCTCCGGAGCCCTCCCATGGTGGAGACGGTGCTGCAGGCGGCGGACCTGTCGGTGTTGATGCCGGGGCAACGGTACCCGACGTACCTGGCGCAGCCGGCGCCGCTTCCGCCGGCGCCGTGCCCGAGGGAAGGGGTGCACTGGCCGCCGCACGACCACGACGTCCACCACTCCTACATGCCGCCATGATCGAGATCTCGCGTACAATGTTGCAGTGGAACAACATGTTAGAGACACACGCTGTCAAACCAACCAACCGACCGATCGATCGATGGATCGAATCCTGTTGCTGATTGAATTGCTGTATAGCGGAGACGCTGTAAATAATAAACGCA]
[+] EMBL AK060162 [CTTTTTGTTACTCCAAGCTTTTTCCTGTAGTTTTCTTCTCCTCTCTCCACATTGCCACCACCAAATCAGCTGAGATCTCACTTTTGATTCGGGGACTGTCTTTAAGTAGAGGCAGCCAAGCTGAGATATCCTCCTGTGTGTTCTCCCGTTCTTGGCATTCGGCAATAGGTCCCATGAAGCCATGATTCCATCAGGAGAGGCACATCAAGACGGTTGCTAGTTTCTGCATTCAATTCAGGGAGGACAATTTGCAGGGTGCCGGTGCTAATCTGAACTCTGAAGGGAGGAGACGTGCTGGTTGCAACCTGCAAGAGGCCAAGAAGCGGCCGAGGCAGGCAGCAATGAGCGGGAGGTCGAGGCCGTGGCCAGGGGACCCGTCGCCGGCGCCTCCGCAGCCGCCGGTCGTCGCCGCAGCGGCGGACGCGGGCGGCGAGGCGTCGACGTCGCTCAGGGACTTCGGCACGTCGATGGACGCCATCTCGTTCGGGTTCGCGGCCACCGCCATCCTCGTCTCCATGTTCCTCCTCATGGCCATCTTCGAGCACCTCATCAAGCCCCACGTCTTCCCGCCCCTCGCCAGCGCGGCGCTCCGCCCCGCGCGCCGCCGCCACGGCGTCTCTCCCGCCGGCAAGCTCCGGAGCCCTCCCATGGTGGAGACGGTGCTGCAGGCGGCGGACCTGTCGGTGTTGATGCCGGGGCAACGGTACCCGACGTACCTGGCGCAGCCGGCGCCGCTTCCGCCGGCGCCGTGCCCGAGGGAAGGGGTGCACTGGCCGCCGCACGACCACGACGTCCACCACTCCTACATGCCGCCATGATCGAGATCTCGCGTACAATGTTGCAGTGGAACAACATGTTAGAGACACACGCTGTCAAACCAACCAACCGACCGATCGATCGATGGATCGAATCCTGTTGCTGATTGAATTGCTGTATAGCGGAGACGCTGTAAATAATAAACGCA]
[+] EMBL AK104289 [CTTTTTGTTACTCCAAGCTTTTTCCTGTAGTTTTCTTCTCCTCTCTCCACATTGCCACCACCAAATCAGCTGAGATCTCACTTTTGATTCGGGGACTGTCTTTAAGTAGAGGCAGCCAAGCTGAGATATCCTCCTGTGTGTTCTCCCGTTCTTGGCATTCGGCAATAGGTCCCATGAAGCCATGATTCCATCAGGAGAGGCACATCAAGACGGTTGCTAGTTTCTGCATTCAATTCAGGGAGGACAATTTGCAGGGTGCCGGTGCTAATCTGAACTCTGAAGGGAGGAGACGTGCTGGTTGCAACCTGCAAGAGGCCAAGAAGCGGCCGAGGCAGGCAGCAATGAGCGGGAGGTCGAGGCCGTGGCCAGGGGACCCGTCGCCGGCGCCTCCGCAGCCGCCGGTCGTCGCCGCAGCGGCGGACGCGGGCGGCGAGGCGTCGACGTCGCTCAGGGACTTCGGCACGTCGATGGACGCCATCTCGTTCGGGTTCGCGGCCACCGCCATCCTCGTCTCCATGTTCCTCCTCATGGCCATCTTCGAGCACCTCATCAAGCCCCACGTCTTCCCGCCCCTCGCCAGCGCGGCGCTCCGCCCCGCGCGCCGCCGCCACGGCGTCTCTCCCGCCGGCAAGCTCCGGAGCCCTCCCATGGTGGAGACGGTGCTGCAGGCGGCGGACCTGTCGGTGTTGATGCCGGGGCAACGGTACCCGACGTACCTGGCGCAGCCGGCGCCGCTTCCGCCGGCGCCGTGCCCGAGGGAAGGGGTGCACTGGCCGCCGCACGACCACGACGTCCACCACTCCTACATGCCGCCATGATCGAGATCTCGCGTACAATGTTGCAGTGGAACAACATGTTAGAGACACACGCTGTCAAACCAACCAACCGACCGATCGATCGATGGATCGAATCCTGTTGCTGATTGAATTGCTGTATAGCGGAGACGCTGTAAATAATAAACGCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6462#0 CTTTTTGTTACTCCAAGCTTTTTCCTGTAGTTTTCTTCTCCTCTCTCCACATTGCCACCA 60
consensus_6462#1 CTTTTTGTTACTCCAAGCTTTTTCCTGTAGTTTTCTTCTCCTCTCTCCACATTGCCACCA 60
************************************************************
consensus_6462#0 CCAAATCAGCTGAGATCTCACTTTTGATTCGGGGACTGTCTTTAAGTAGAGGCAGCCAAG 120
consensus_6462#1 CCAAATCAGCTGAGATCTCACTTTTGATTCGGGGACTGTCTTTAAGTAGAGGCAGCCAAG 120
************************************************************
consensus_6462#0 CTGAGATATCCTCCTGTGTGTTCTCCCGTTCTTGGCATTCGGCAATAGGTCCCATGAAGC 180
consensus_6462#1 CTGAGATATCCTCCTGTGTGTTCTCCCGTTCTTGGCATTCGGCAATAGGTCCCATGAAGC 180
************************************************************
consensus_6462#0 CATGATTCCATCAGGAGAGGCACATCAAGACGGTTGCTAGTTTCTGCATTCAATTCAGGG 240
consensus_6462#1 CATGATTCCATCAGGAGAGGCACATCAAGACGGTTGCTAGTTTCTGCATTCAATTCAGGG 240
************************************************************
consensus_6462#0 AGGACAATTTGCAGGGTGCCGGTGCTAATCTGAACTCTGAAGGGAGGAGACGTGCTGGTT 300
consensus_6462#1 AGGACAATTTGCAGGGTGCCGGTGCTAATCTGAACTCTGAAGGGAGGAGACGTGCTGGTT 300
************************************************************
consensus_6462#0 GCAACCTGCAAGAGGCCAAGAAGCGGCCGAGGCAGGCAGCAATGAGCGGGAGGTCGAGGC 360
consensus_6462#1 GCAACCTGCAAGAGGCCAAGAAGCGGCCGAGGCAGGCAGCAATGAGCGGGAGGTCGAGGC 360
************************************************************
consensus_6462#0 CGTGGCCAGGGGACCCGTCGCCGGCGCCTCCGCAGCCGCCGGTCGTCGCCGCAGCGGCGG 420
consensus_6462#1 CGTGGCCAGGGGACCCGTCGCCGGCGCCTCCGCAGCCGCCGGTCGTCGCCGCAGCGGCGG 420
************************************************************
consensus_6462#0 ACGCGGGCGGCGAGGCGTCGACGTCGCTCAGGGACTTCGGCACGTCGATGGACGCCATCT 480
consensus_6462#1 ACGCGGGCGGCGAGGCGTCGACGTCGCTCAGGGACTTCGGCACGTCGATGGACGCCATCT 480
************************************************************
consensus_6462#0 CGTTCGGGTTCGCGGCCACCGCCATCCTCGTCTCCATGTTCCTCCTCATGGCCATCTTCG 540
consensus_6462#1 CGTTCGGGTTCGCGGCCACCGCCATCCTCGTCTCCATGTTCCTCCTCATGGCCATCTTCG 540
************************************************************
consensus_6462#0 AGCACCTCATCAAGCCCCACGTCTTCCCGCCCCTCGCCAGCGCGGCGCTCCGCCCCGCGC 600
consensus_6462#1 AGCACCTCATCAAGCCCCACGTCTTCCCGCCCCTCGCCAGCGCGGCGCTCCGCCCCGCGC 600
************************************************************
consensus_6462#0 GCCGCCGCCACGGCGTCTCTCCCGCCGGCAAGCTCCGGAGCCCTCCCATGGTACGTAGTA 660
consensus_6462#1 GCCGCCGCCACGGCGTCTCTCCCGCCGGCAAGCTCCGGAGCCCTCCCATGGT-------- 652
****************************************************
consensus_6462#0 CGTCGCCAACCACTTACACAGAGCGAAATGATCCAATGTTGAGGTGTTTGCTGCTCTGAA 720
consensus_6462#1 ------------------------------------------------------------
consensus_6462#0 ATTGTTGCAGGTGGAGACGGTGCTGCAGGCGGCGGACCTGTCGGTGTTGATGCCGGGGCA 780
consensus_6462#1 ------------GGAGACGGTGCTGCAGGCGGCGGACCTGTCGGTGTTGATGCCGGGGCA 700
************************************************
consensus_6462#0 ACGGTACCCGACGTACCTGGCGCAGCCGGCGCCGCTTCCGCCGGCGCCGTGCCCGAGGGA 840
consensus_6462#1 ACGGTACCCGACGTACCTGGCGCAGCCGGCGCCGCTTCCGCCGGCGCCGTGCCCGAGGGA 760
************************************************************
consensus_6462#0 AGGGGTGCACTGGCCGCCGCACGACCACGACGTCCACCACTCCTACATGCCGCCATGATC 900
consensus_6462#1 AGGGGTGCACTGGCCGCCGCACGACCACGACGTCCACCACTCCTACATGCCGCCATGATC 820
************************************************************
consensus_6462#0 GAGATCTCGCGTACAATGTTGCAGTGGAACAACATGTTAGAGACACACGCTGTCAAACCA 960
consensus_6462#1 GAGATCTCGCGTACAATGTTGCAGTGGAACAACATGTTAGAGACACACGCTGTCAAACCA 880
************************************************************
consensus_6462#0 ACCAACCGACCGATCGATCGATGGATCGAATCCTGTTGCTGATTGAATTGCTGTATAGCG 1020
consensus_6462#1 ACCAACCGACCGATCGATCGATGGATCGAATCCTGTTGCTGATTGAATTGCTGTATAGCG 940
************************************************************
consensus_6462#0 GAGACGCTGTAAATAATAAACGCAGGGGAGAGTGACAAGAGTTGTTGGATATNAAAAAA 1079
consensus_6462#1 GAGACGCTGTAAATAATAAACGCA----------------------------------- 964
************************
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||