These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6462#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1079 fasta sequence [CTTTTTGTTACTCCAAGCTTTTTCCTGTAGTTTTCTTCTCCTCTCTCCACATTGCCACCACCAAATCAGCTGAGATCTCACTTTTGATTCGGGGACTGTCTTTAAGTAGAGGCAGCCAAGCTGAGATATCCTCCTGTGTGTTCTCCCGTTCTTGGCATTCGGCAATAGGTCCCATGAAGCCATGATTCCATCAGGAGAGGCACATCAAGACGGTTGCTAGTTTCTGCATTCAATTCAGGGAGGACAATTTGCAGGGTGCCGGTGCTAATCTGAACTCTGAAGGGAGGAGACGTGCTGGTTGCAACCTGCAAGAGGCCAAGAAGCGGCCGAGGCAGGCAGCAATGAGCGGGAGGTCGAGGCCGTGGCCAGGGGACCCGTCGCCGGCGCCTCCGCAGCCGCCGGTCGTCGCCGCAGCGGCGGACGCGGGCGGCGAGGCGTCGACGTCGCTCAGGGACTTCGGCACGTCGATGGACGCCATCTCGTTCGGGTTCGCGGCCACCGCCATCCTCGTCTCCATGTTCCTCCTCATGGCCATCTTCGAGCACCTCATCAAGCCCCACGTCTTCCCGCCCCTCGCCAGCGCGGCGCTCCGCCCCGCGCGCCGCCGCCACGGCGTCTCTCCCGCCGGCAAGCTCCGGAGCCCTCCCATGGTACGTAGTACGTCGCCAACCACTTACACAGAGCGAAATGATCCAATGTTGAGGTGTTTGCTGCTCTGAAATTGTTGCAGGTGGAGACGGTGCTGCAGGCGGCGGACCTGTCGGTGTTGATGCCGGGGCAACGGTACCCGACGTACCTGGCGCAGCCGGC-GCCGCTTCCGCCGGCGCCGTGCCCGAGGGAAGGGGTGCACTGGCCGCCGCACGACCACGACGTCCACCACTCCTACATGCCGCCATGATCGAGATCTCGCGTACAATGTTGCAGTGGAACAACATGTTAGAGACACACGCTGTCAAACCAACCAACCGACCGATCGATCGATGGATCGAATCCTGTTGCTGATTGAA-TTGCTGTATAGCGGAGACGCTGTAAATAAT-AAACGCAGGGGAGAGTGACAAGAGTTGTTGGATATNAAAAAA] [+] EMBL AK061119 [CTTTTTGTTACTCCAAGCTTTTTCCTGTAGTTTTCTTCTCCTCTCTCCACATTGCCACCACCAAATCAGCTGAGATCTCACTTTTGATTCGGGGACTGTCTTTAAGTAGAGGCAGCCAAGCTGAGATATCCTCCTGTGTGTTCTCCCGTTCTTGGCATTCGGCAATAGGTCCCATGAAGCCATGATTCCATCAGGAGAGGCACATCAAGACGGTTGCTAGTTTCTGCATTCAATTCAGGGAGGACAATTTGCAGGGTGCCGGTGCTAATCTGAACTCTGAAGGGAGGAGACGTGCTGGTTGCAACCTGCAAGAGGCCAAGAAGCGGCCGAGGCAGGCAGCAATGAGCGGGAGGTCGAGGCCGTGGCCAGGGGACCCGTCGCCGGCGCCTCCGCAGCCGCCGGTCGTCGCCGCAGCGGCGGACGCGGGCGGCGAGGCGTCGACGTCGCTCAGGGACTTCGGCACGTCGATGGACGCCATCTCGTTCGGGTTCGCGGCCACCGCCATCCTCGTCTCCATGTTCCTCCTCATGGCCATCTTCGAGCACCTCATCAAGCCCCACGTCTTCCCGCCCCTCGCCAGCGCGGCGCTCCGCCCCGCGCGCCGCCGCCACGGCGTCTCTCCCGCCGGCAAGCTCCGGAGCCCTCCCATGGTACGTAGTACGTCGCCAACCACTTACACAGAGCGAAATGATCCAATGTTGAGGTGTTTGCTGCTCTGAAATTGTTGCAGGTGGAGACGGTGCTGCAGGCGGCGGACCTGTCGGTGTTGATGCCGGGGCAACGGTACCCGACGTACCTGGCGCAGCCGGC GCCGCTTCCGCCGGCGCCGTGCCCGAGGGAAGGGGTGCACTGGCCGCCGCACGACCACGACGTCCACCACTCCTACATGCCGCCATGATCGAGATCTCGCGTACAATGTTGCAGTGGAACAACATGTTAGAGACACACGCTGTCAAACCAACCAACCGACCGATCGATCGATGGATCGAATCCTGTTGCTGATTGAA TTGCTGTATAGCGGAGACGCTGTAAATAAT AAACGCAGGGGAGAGTGACAAGAGT ] [+] EMBL AU058082 [ CGGGGCAACGGTACCCGACGTACCTGGCGCA CGGCNGCCGCTTCCGCCGGCGCCGTGCCCGAGGGAAGGGGTGCACTGGCCGCCGCACGACCATGACGTCCACCACTCCTACATGCCGCCATGATCGAGATCTCGCGTACAATGTTGCAGTGGAACAACATGTTAGAGACACACGCTGTCAAACCAACCAACCGACCGATCGATCGATGGATCGAATCCTGTTGCTGATTGAATTTGCTGTATAGCGGAGACGCTGTAAATAATAAAACGCAGGGGAGAGTTACAAGAGTTGTTGGATATNAAAAAA] consensusID : consensus_6462#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 964 fasta sequence [CTTTTTGTTACTCCAAGCTTTTTCCTGTAGTTTTCTTCTCCTCTCTCCACATTGCCACCACCAAATCAGCTGAGATCTCACTTTTGATTCGGGGACTGTCTTTAAGTAGAGGCAGCCAAGCTGAGATATCCTCCTGTGTGTTCTCCCGTTCTTGGCATTCGGCAATAGGTCCCATGAAGCCATGATTCCATCAGGAGAGGCACATCAAGACGGTTGCTAGTTTCTGCATTCAATTCAGGGAGGACAATTTGCAGGGTGCCGGTGCTAATCTGAACTCTGAAGGGAGGAGACGTGCTGGTTGCAACCTGCAAGAGGCCAAGAAGCGGCCGAGGCAGGCAGCAATGAGCGGGAGGTCGAGGCCGTGGCCAGGGGACCCGTCGCCGGCGCCTCCGCAGCCGCCGGTCGTCGCCGCAGCGGCGGACGCGGGCGGCGAGGCGTCGACGTCGCTCAGGGACTTCGGCACGTCGATGGACGCCATCTCGTTCGGGTTCGCGGCCACCGCCATCCTCGTCTCCATGTTCCTCCTCATGGCCATCTTCGAGCACCTCATCAAGCCCCACGTCTTCCCGCCCCTCGCCAGCGCGGCGCTCCGCCCCGCGCGCCGCCGCCACGGCGTCTCTCCCGCCGGCAAGCTCCGGAGCCCTCCCATGGTGGAGACGGTGCTGCAGGCGGCGGACCTGTCGGTGTTGATGCCGGGGCAACGGTACCCGACGTACCTGGCGCAGCCGGCGCCGCTTCCGCCGGCGCCGTGCCCGAGGGAAGGGGTGCACTGGCCGCCGCACGACCACGACGTCCACCACTCCTACATGCCGCCATGATCGAGATCTCGCGTACAATGTTGCAGTGGAACAACATGTTAGAGACACACGCTGTCAAACCAACCAACCGACCGATCGATCGATGGATCGAATCCTGTTGCTGATTGAATTGCTGTATAGCGGAGACGCTGTAAATAATAAACGCA] [+] EMBL AK060162 [CTTTTTGTTACTCCAAGCTTTTTCCTGTAGTTTTCTTCTCCTCTCTCCACATTGCCACCACCAAATCAGCTGAGATCTCACTTTTGATTCGGGGACTGTCTTTAAGTAGAGGCAGCCAAGCTGAGATATCCTCCTGTGTGTTCTCCCGTTCTTGGCATTCGGCAATAGGTCCCATGAAGCCATGATTCCATCAGGAGAGGCACATCAAGACGGTTGCTAGTTTCTGCATTCAATTCAGGGAGGACAATTTGCAGGGTGCCGGTGCTAATCTGAACTCTGAAGGGAGGAGACGTGCTGGTTGCAACCTGCAAGAGGCCAAGAAGCGGCCGAGGCAGGCAGCAATGAGCGGGAGGTCGAGGCCGTGGCCAGGGGACCCGTCGCCGGCGCCTCCGCAGCCGCCGGTCGTCGCCGCAGCGGCGGACGCGGGCGGCGAGGCGTCGACGTCGCTCAGGGACTTCGGCACGTCGATGGACGCCATCTCGTTCGGGTTCGCGGCCACCGCCATCCTCGTCTCCATGTTCCTCCTCATGGCCATCTTCGAGCACCTCATCAAGCCCCACGTCTTCCCGCCCCTCGCCAGCGCGGCGCTCCGCCCCGCGCGCCGCCGCCACGGCGTCTCTCCCGCCGGCAAGCTCCGGAGCCCTCCCATGGTGGAGACGGTGCTGCAGGCGGCGGACCTGTCGGTGTTGATGCCGGGGCAACGGTACCCGACGTACCTGGCGCAGCCGGCGCCGCTTCCGCCGGCGCCGTGCCCGAGGGAAGGGGTGCACTGGCCGCCGCACGACCACGACGTCCACCACTCCTACATGCCGCCATGATCGAGATCTCGCGTACAATGTTGCAGTGGAACAACATGTTAGAGACACACGCTGTCAAACCAACCAACCGACCGATCGATCGATGGATCGAATCCTGTTGCTGATTGAATTGCTGTATAGCGGAGACGCTGTAAATAATAAACGCA] [+] EMBL AK104289 [CTTTTTGTTACTCCAAGCTTTTTCCTGTAGTTTTCTTCTCCTCTCTCCACATTGCCACCACCAAATCAGCTGAGATCTCACTTTTGATTCGGGGACTGTCTTTAAGTAGAGGCAGCCAAGCTGAGATATCCTCCTGTGTGTTCTCCCGTTCTTGGCATTCGGCAATAGGTCCCATGAAGCCATGATTCCATCAGGAGAGGCACATCAAGACGGTTGCTAGTTTCTGCATTCAATTCAGGGAGGACAATTTGCAGGGTGCCGGTGCTAATCTGAACTCTGAAGGGAGGAGACGTGCTGGTTGCAACCTGCAAGAGGCCAAGAAGCGGCCGAGGCAGGCAGCAATGAGCGGGAGGTCGAGGCCGTGGCCAGGGGACCCGTCGCCGGCGCCTCCGCAGCCGCCGGTCGTCGCCGCAGCGGCGGACGCGGGCGGCGAGGCGTCGACGTCGCTCAGGGACTTCGGCACGTCGATGGACGCCATCTCGTTCGGGTTCGCGGCCACCGCCATCCTCGTCTCCATGTTCCTCCTCATGGCCATCTTCGAGCACCTCATCAAGCCCCACGTCTTCCCGCCCCTCGCCAGCGCGGCGCTCCGCCCCGCGCGCCGCCGCCACGGCGTCTCTCCCGCCGGCAAGCTCCGGAGCCCTCCCATGGTGGAGACGGTGCTGCAGGCGGCGGACCTGTCGGTGTTGATGCCGGGGCAACGGTACCCGACGTACCTGGCGCAGCCGGCGCCGCTTCCGCCGGCGCCGTGCCCGAGGGAAGGGGTGCACTGGCCGCCGCACGACCACGACGTCCACCACTCCTACATGCCGCCATGATCGAGATCTCGCGTACAATGTTGCAGTGGAACAACATGTTAGAGACACACGCTGTCAAACCAACCAACCGACCGATCGATCGATGGATCGAATCCTGTTGCTGATTGAATTGCTGTATAGCGGAGACGCTGTAAATAATAAACGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6462#0 CTTTTTGTTACTCCAAGCTTTTTCCTGTAGTTTTCTTCTCCTCTCTCCACATTGCCACCA 60 consensus_6462#1 CTTTTTGTTACTCCAAGCTTTTTCCTGTAGTTTTCTTCTCCTCTCTCCACATTGCCACCA 60 ************************************************************ consensus_6462#0 CCAAATCAGCTGAGATCTCACTTTTGATTCGGGGACTGTCTTTAAGTAGAGGCAGCCAAG 120 consensus_6462#1 CCAAATCAGCTGAGATCTCACTTTTGATTCGGGGACTGTCTTTAAGTAGAGGCAGCCAAG 120 ************************************************************ consensus_6462#0 CTGAGATATCCTCCTGTGTGTTCTCCCGTTCTTGGCATTCGGCAATAGGTCCCATGAAGC 180 consensus_6462#1 CTGAGATATCCTCCTGTGTGTTCTCCCGTTCTTGGCATTCGGCAATAGGTCCCATGAAGC 180 ************************************************************ consensus_6462#0 CATGATTCCATCAGGAGAGGCACATCAAGACGGTTGCTAGTTTCTGCATTCAATTCAGGG 240 consensus_6462#1 CATGATTCCATCAGGAGAGGCACATCAAGACGGTTGCTAGTTTCTGCATTCAATTCAGGG 240 ************************************************************ consensus_6462#0 AGGACAATTTGCAGGGTGCCGGTGCTAATCTGAACTCTGAAGGGAGGAGACGTGCTGGTT 300 consensus_6462#1 AGGACAATTTGCAGGGTGCCGGTGCTAATCTGAACTCTGAAGGGAGGAGACGTGCTGGTT 300 ************************************************************ consensus_6462#0 GCAACCTGCAAGAGGCCAAGAAGCGGCCGAGGCAGGCAGCAATGAGCGGGAGGTCGAGGC 360 consensus_6462#1 GCAACCTGCAAGAGGCCAAGAAGCGGCCGAGGCAGGCAGCAATGAGCGGGAGGTCGAGGC 360 ************************************************************ consensus_6462#0 CGTGGCCAGGGGACCCGTCGCCGGCGCCTCCGCAGCCGCCGGTCGTCGCCGCAGCGGCGG 420 consensus_6462#1 CGTGGCCAGGGGACCCGTCGCCGGCGCCTCCGCAGCCGCCGGTCGTCGCCGCAGCGGCGG 420 ************************************************************ consensus_6462#0 ACGCGGGCGGCGAGGCGTCGACGTCGCTCAGGGACTTCGGCACGTCGATGGACGCCATCT 480 consensus_6462#1 ACGCGGGCGGCGAGGCGTCGACGTCGCTCAGGGACTTCGGCACGTCGATGGACGCCATCT 480 ************************************************************ consensus_6462#0 CGTTCGGGTTCGCGGCCACCGCCATCCTCGTCTCCATGTTCCTCCTCATGGCCATCTTCG 540 consensus_6462#1 CGTTCGGGTTCGCGGCCACCGCCATCCTCGTCTCCATGTTCCTCCTCATGGCCATCTTCG 540 ************************************************************ consensus_6462#0 AGCACCTCATCAAGCCCCACGTCTTCCCGCCCCTCGCCAGCGCGGCGCTCCGCCCCGCGC 600 consensus_6462#1 AGCACCTCATCAAGCCCCACGTCTTCCCGCCCCTCGCCAGCGCGGCGCTCCGCCCCGCGC 600 ************************************************************ consensus_6462#0 GCCGCCGCCACGGCGTCTCTCCCGCCGGCAAGCTCCGGAGCCCTCCCATGGTACGTAGTA 660 consensus_6462#1 GCCGCCGCCACGGCGTCTCTCCCGCCGGCAAGCTCCGGAGCCCTCCCATGGT-------- 652 **************************************************** consensus_6462#0 CGTCGCCAACCACTTACACAGAGCGAAATGATCCAATGTTGAGGTGTTTGCTGCTCTGAA 720 consensus_6462#1 ------------------------------------------------------------ consensus_6462#0 ATTGTTGCAGGTGGAGACGGTGCTGCAGGCGGCGGACCTGTCGGTGTTGATGCCGGGGCA 780 consensus_6462#1 ------------GGAGACGGTGCTGCAGGCGGCGGACCTGTCGGTGTTGATGCCGGGGCA 700 ************************************************ consensus_6462#0 ACGGTACCCGACGTACCTGGCGCAGCCGGCGCCGCTTCCGCCGGCGCCGTGCCCGAGGGA 840 consensus_6462#1 ACGGTACCCGACGTACCTGGCGCAGCCGGCGCCGCTTCCGCCGGCGCCGTGCCCGAGGGA 760 ************************************************************ consensus_6462#0 AGGGGTGCACTGGCCGCCGCACGACCACGACGTCCACCACTCCTACATGCCGCCATGATC 900 consensus_6462#1 AGGGGTGCACTGGCCGCCGCACGACCACGACGTCCACCACTCCTACATGCCGCCATGATC 820 ************************************************************ consensus_6462#0 GAGATCTCGCGTACAATGTTGCAGTGGAACAACATGTTAGAGACACACGCTGTCAAACCA 960 consensus_6462#1 GAGATCTCGCGTACAATGTTGCAGTGGAACAACATGTTAGAGACACACGCTGTCAAACCA 880 ************************************************************ consensus_6462#0 ACCAACCGACCGATCGATCGATGGATCGAATCCTGTTGCTGATTGAATTGCTGTATAGCG 1020 consensus_6462#1 ACCAACCGACCGATCGATCGATGGATCGAATCCTGTTGCTGATTGAATTGCTGTATAGCG 940 ************************************************************ consensus_6462#0 GAGACGCTGTAAATAATAAACGCAGGGGAGAGTGACAAGAGTTGTTGGATATNAAAAAA 1079 consensus_6462#1 GAGACGCTGTAAATAATAAACGCA----------------------------------- 964 ************************ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||