cluster # 6464

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Oryza sativa
cluster # 6464 cluster # 6464 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6464#0 length = 609 sequences # 3

consensus_6464#1 length = 282 sequences # 1

consensusID : consensus_6464#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 609
fasta sequence

                              [GCAATTAGTATATCGATCGGCCAGAGGAGGAAAAAATATATAAAGCGCGGGTGCACGATGCGCCGCCGCGTCGTCCCGGCGGCGGNGGCCG-TTTCCGCCCAGCTGGCAGCCGCCCTCCTCCTCCTCCTCCTCCTCCACGCCGTCACCGTCGTCGTCGTCGCCGGCGGCGGCGGCAGCGAAGTGGCCGTCGACAGGTACGCGGCTGCAGGCGCGA-TGCTGCTGCTTCCGCGGCGGCGGCGGCAGCAGCTGGAGGACGAGGTGGTGTTCCCGGCGGCGATGGCGGTCGTCGGAGCTGAGCAGCTGCAGCAGGGCGGGTCCTTCAGCGGGCTCACGGCGAACAAGCAAGCCTGCCTGCAGGGTCACTCGTGCGCCGCGTTCGCCATGCCCTACACCGGCCATGGCTGCATCTACAGAAATAATTGCAAGCAGTAAGCTAGCTTGCTATAGAGCTATCGATCTTATCATGTAGTATACTATAATATTGTTTATATAGTTGTTTAATTACTCATTATAATTGATTGTTGTAATTGAATCTCAATGTACCATGGACTGTACTAGTACTACTACTTGTCATATCACGCTCGTACCATGGAGCATCTTTAAGGTACC]

[+] EMBL C73973               [GCAATTAGTATATCGATCGGCCAGAGGAGGAAAAAATATATAAAGCGCGGGTGCACGATGCGCCGCCGCGTCGTCCCGGCGGCGGNGGCCGTTTTCCGCCCAGCTGGCAGCCGCCCTCCTCCTCCNCCGNCTCCTCCACGCCGTCACCGTCGTCGTCGTCGCCGGCGGC GNGGCAGCGAAGTGGCCGTCGACAGGTACGCGGCTGCAGGCGCGACTGCTGCTG                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL AK058855             [                                              GCGGGTGCACGATGCGCCGCCGCGTCGTCCCGGCGGCGGCGGCCG TTTCCGCCCAGCTGGCAGCCGCCCTCCTCCTCCTCCTCCTCCTCCACGCCGTCACCGTCGTCGTCGTCGCCGGCGGCGGCGGCAGCGAAGTGGCCGTCGACAGGTACGCGGCTGCAGGCGCGA TGCTGCTGCTTCCGCGGCGGCGGCGGCAGCAGCTGGAGGACGAGGTGGTGTTCCCGGCGGCGATGGCGGTCGTCGGAGCTGAGCAGCTGCAGCAGGGCGGGTCCTTCAGCGGGCTCACGGCGAACAAGCAAGCCTGCCTGCAGGGTCACTCGTGCGCCGCGTTCGCCATGCCCTACACCGGCCATGGCTGCATCTACAGAAATAATTGCAAGCAGTAAGCTAGCTTGCTATAGAGCTATCGATCTTATCATGTAGTATACTATAATATTGTTTATATAGTTGTTTAATTACTCATTATAATTGATTGTTGTAATTGAATCTCAATGTACCATGGACTGTACTAGTACTACTACTTGTCATATCACGCTCGTACCATGGAGCATCTTTAAGGTACC]
[+] EMBL CB685258             [                                                                                                       CTGGCAGCCGCCCTCCTCCTCCTCCTCCTCCTCCACGCCGTCACCGTCGTCGTCGTCGCCGGCGGCGGCGGCAGCGAAGTGGCCGTCGACAGGTACGCGGCTGCAGGCGCGA TGCTGCTGCTTCCGCGGCGGCGGCGGCAGCAGCTGGAGGACGAGGTGGTGTTCCCGGCGGCGATGGCGGTCGTCGGAGCTGAGCAGCTGCAGCAGGGCGGGTCCTTCAGCGGGCTCACGGCGAACAAGCAAGTCTGCCTGCAGGGTCACTCGTGCGCCGCGTTCGCCATGCCCTACACCGGCCATGGCTGCATCTACAGAAATAATTGCAAGCAGTAAGCTAGCTTGCTATAGAGCTATCGATCTTATCATGTAGTATACTATAATATTGTTTATATAGTTGTTTAATTACTCATTATAATTGATTGTTGTAATTGAATCTCAATGTACCATGGACTGTACTAGTACTACTACTTGTCATATCA                               ]




>consensus_6464#0
GCAATTAGTATATCGATCGGCCAGAGGAGGAAAAAATATATAAAGCGCGGGTGCACGATG
CGCCGCCGCGTCGTCCCGGCGGCGGNGGCCGTTTCCGCCCAGCTGGCAGCCGCCCTCCTC
CTCCTCCTCCTCCTCCACGCCGTCACCGTCGTCGTCGTCGCCGGCGGCGGCGGCAGCGAA
GTGGCCGTCGACAGGTACGCGGCTGCAGGCGCGATGCTGCTGCTTCCGCGGCGGCGGCGG
CAGCAGCTGGAGGACGAGGTGGTGTTCCCGGCGGCGATGGCGGTCGTCGGAGCTGAGCAG
CTGCAGCAGGGCGGGTCCTTCAGCGGGCTCACGGCGAACAAGCAAGCCTGCCTGCAGGGT
CACTCGTGCGCCGCGTTCGCCATGCCCTACACCGGCCATGGCTGCATCTACAGAAATAAT
TGCAAGCAGTAAGCTAGCTTGCTATAGAGCTATCGATCTTATCATGTAGTATACTATAAT
ATTGTTTATATAGTTGTTTAATTACTCATTATAATTGATTGTTGTAATTGAATCTCAATG
TACCATGGACTGTACTAGTACTACTACTTGTCATATCACGCTCGTACCATGGAGCATCTT
TAAGGTACC

consensusID : consensus_6464#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 282
fasta sequence

                              [GGCGGGTCCTTCAGCGGGCTCACGGCGAACAANCAAGTCTGCCTGCAGGGTCACTCGTGCGCCGCGTTCGCCATGCCCTACACCGGCCATGGCTGCATCTACAGAAATAATTGCAAGCAGTAAGCTAGCTTGCTATANAGCTATCGATCTTATCATGTAGTATACTATAATATTGTTTATATAGTTGTTTAATTACTCATTATAATTGATTGTTGTAATTGAATCTCAATGTACCATGGACTGTACTAGTACTACTACTTGTCNAAAAAAAAAAAAAAAAAA]

[+] EMBL AU172770             [GGCGGGTCCTTCAGCGGGCTCACGGCGAACAANCAAGTCTGCCTGCAGGGTCACTCGTGCGCCGCGTTCGCCATGCCCTACACCGGCCATGGCTGCATCTACAGAAATAATTGCAAGCAGTAAGCTAGCTTGCTATANAGCTATCGATCTTATCATGTAGTATACTATAATATTGTTTATATAGTTGTTTAATTACTCATTATAATTGATTGTTGTAATTGAATCTCAATGTACCATGGACTGTACTAGTACTACTACTTGTCNAAAAAAAAAAAAAAAAAA]




>consensus_6464#1
GGCGGGTCCTTCAGCGGGCTCACGGCGAACAANCAAGTCTGCCTGCAGGGTCACTCGTGC
GCCGCGTTCGCCATGCCCTACACCGGCCATGGCTGCATCTACAGAAATAATTGCAAGCAG
TAAGCTAGCTTGCTATANAGCTATCGATCTTATCATGTAGTATACTATAATATTGTTTAT
ATAGTTGTTTAATTACTCATTATAATTGATTGTTGTAATTGAATCTCAATGTACCATGGA
CTGTACTAGTACTACTACTTGTCNAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6464#0      GCAATTAGTATATCGATCGGCCAGAGGAGGAAAAAATATATAAAGCGCGGGTGCACGATG 60
consensus_6464#1      ------------------------------------------------------------
                                                                                  

consensus_6464#0      CGCCGCCGCGTCGTCCCGGCGGCGGNGGCCGTTTCCGCCCAGCTGGCAGCCGCCCTCCTC 120
consensus_6464#1      ------------------------------------------------------------
                                                                                  

consensus_6464#0      CTCCTCCTCCTCCTCCACGCCGTCACCGTCGTCGTCGTCGCCGGCGGCGGCGGCAGCGAA 180
consensus_6464#1      ------------------------------------------------------------
                                                                                  

consensus_6464#0      GTGGCCGTCGACAGGTACGCGGCTGCAGGCGCGATGCTGCTGCTTCCGCGGCGGCGGCGG 240
consensus_6464#1      ------------------------------------------------------------
                                                                                  

consensus_6464#0      CAGCAGCTGGAGGACGAGGTGGTGTTCCCGGCGGCGATGGCGGTCGTCGGAGCTGAGCAG 300
consensus_6464#1      ------------------------------------------------------------
                                                                                  

consensus_6464#0      CTGCAGCAGGGCGGGTCCTTCAGCGGGCTCACGGCGAACAAGCAAGCCTGCCTGCAGGGT 360
consensus_6464#1      ---------GGCGGGTCCTTCAGCGGGCTCACGGCGAACAANCAAGTCTGCCTGCAGGGT 51
                               ******************************** **** *************

consensus_6464#0      CACTCGTGCGCCGCGTTCGCCATGCCCTACACCGGCCATGGCTGCATCTACAGAAATAAT 420
consensus_6464#1      CACTCGTGCGCCGCGTTCGCCATGCCCTACACCGGCCATGGCTGCATCTACAGAAATAAT 111
                      ************************************************************

consensus_6464#0      TGCAAGCAGTAAGCTAGCTTGCTATAGAGCTATCGATCTTATCATGTAGTATACTATAAT 480
consensus_6464#1      TGCAAGCAGTAAGCTAGCTTGCTATANAGCTATCGATCTTATCATGTAGTATACTATAAT 171
                      ************************** *********************************

consensus_6464#0      ATTGTTTATATAGTTGTTTAATTACTCATTATAATTGATTGTTGTAATTGAATCTCAATG 540
consensus_6464#1      ATTGTTTATATAGTTGTTTAATTACTCATTATAATTGATTGTTGTAATTGAATCTCAATG 231
                      ************************************************************

consensus_6464#0      TACCATGGACTGTACTAGTACTACTACTTGTCATATCACGCTCGTACCATGGAGCATCTT 600
consensus_6464#1      TACCATGGACTGTACTAGTACTACTACTTGTCNAAAAAAAAAAAAAAAAAA--------- 282
                      ********************************  *  *       *  *           

consensus_6464#0      TAAGGTACC 609
consensus_6464#1      ---------