These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6475#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 828 fasta sequence [CAGCTCCTACAAGCTGACACTGTGAACCAAATACTCACAGATCAGGAAAATGCTGTCAGTCAATTACAGTCGAGCCACACAGATTATTTTGTTCAAATACGACCTAGACAAGAATACGTTACCAATTACTCACAATCACAGTTGAGCCGTGCTGCCACTGTGAATCAAATAGAGACTAATCAAAGGAACATGTCAGGTCAGTTGCAGTCTAGCCAAGCAGATTCTCTGGATCAAATACAGACAGAGCAGGAAAGTTCTGCCAGTCGGTTACAGTCAAGCCAAGCAGACTCTTTCAATGAAATACATACTATACAAGAATACATTACTGAACAGTCAGAGTCACAAGTAAGCCATGCAAATCAAATACAGATTGATCTAGGAAACACTGTCGATCTGTTGCCGTCGAGCCAAGCAGACGCCATATTTCAAATGGAGACTACACAAGAATACATTACCAACCAGTCTCAGTCAAGACAAGCAGATATTGTGGATCATATGCAGGTTAATCAGGATAACACTGCTAATCAGTTCCATTTGAGACAAGCTGACACAGTCAACAGAATACAAACTATGCAGGAGAGCACCACTGATCAGCCACAGCTCATCCAAGCTTTAACTGTGAATCAAATACAGGTCAATGGGGAAAACACTGCCAATCACGTCCAGTCAAGGCAAGCAGATACTGTGAATCATATACAGCTTAATCAGGATAACACTGTCAATCAGTTCCAGTTGAGACGAGCTGACACAGTCAACAGAATACAAACTATGCAGGATAGCACCGCTGATCAGCCACATCTCATCCAAGCTTTAACTGTGGATCAAATA] [+] EMBL CB671629 [CAGCTCCTACAAGCTGACACTGTGAACCAAATACTCACAGATCAGGAAAATGCTGTCAGTCAATTACAGTCGAGCCACACAGATTATTTTGTTCAAATACGACCTAGACAAGAATACGTTACCAATTACTCACAATCACAGTTGAGCCGTGCTGCCACTGTGAATCAAATAGAGACTAATCAAAGGAACATGTCAGGTCAGTTGCAGTCTAGCCAAGCAGATTCTCTGGATCAAATACAGACAGAGCAGGAAAGTTCTGCCAGTCGGTTACAGTCAAGCCAAGCAGACTCTTTCAATGAAATACATACTATACAAGAATACATTACTGAACAGTCAGAGTCACAAGTAAGCCATGCAAATCAAATACAGATTGATCTAGGAAACACTGTCGATCTGTTGCCGTCGAGCCAAGCAGACGCCATATTTCAAATGGAGACTACACAAGAATACATTACCAACCAGTCTCAGTCAAGACAAGCAGATATTGTGGATCATATGCAGGTTAATCAGGATAACACTGCTAATCAGTTCCATTTGAGACAAGCTGACACAGTCAACAGAATACAAACTATGCAGGAGAGCACCACTGATCAGCCACAGCTCATCCAAGCTTTAACTGTGAATCAAATACAGGTCAATGGGGAAAACACTGCCAATCACGTCCAGTCAAGGCAAGCAGATACTGTGAATCATATACAGCTTAATCAGGATAACACTGTCAATCAGTTCCAGTTGAGACGAGCTGACACAGTCAACAGAATACAAACTATGCAGGATAGCACCGCTGATCAGCCACATCTCATCCAAGCTTTAACTGTGGATCAAATA] [+] EMBL CA766697 [ TGCTGTCAGTCAATTACAGTCGAGCC CACAGATTATTTTGTTCAAATACGACCTAGACAAAAATACGTTACCAATTACTCACAATCACAGTTGAGCCGTGCTGCCACTGTGAATCAAATAGAGACTAATCAAAGGAACATGTCAGGTCAATTGCAGTCTAGCCAAGCAGATTCTCTGGATCAAATACAGACAGAGCAGGAAAGTTCTGCCAGTCGGTTACAGTCAAGCCAAGCAGACTCTTTCAATGAAATACAGACTATACAAGAATACATTACTGAACAGTCAGAGTCACAAGTAAGCCATGCAAATCAAATACAGATTGATCTAGGAAACACTGTCGATCTGTTGCCGTCGAGCCAAGCAGACGCCATATTTCAAATGGAGACTACACAAGAATACATTACCAACCAGTCTCAGTCAATCCAAGCAGATATTGTGGATCATATGCAGGTTAATCAGGATAACACTGCTAATCAGTTCCATTTGAGACAAGCTGACACAGTCAACAGAATACAAACTATGCAGGAGAGCACCACTGATCATCCACAGCTCATCCAAGCTTTAACTGTGAATCAAATACAGGTCAATGGGGAAAACACTGCCAATCACGTCCAGTCAAGGCAAGCAGATACTGTGAATCATATACAGCTTAATCAGGATAACACTGTCAATCAGTTCCAGTTGAGACGAGCTGACACAGTCAACAGAATACAAACTATGCAGGATAGCACCGCTGATCAGCCACATCTCATCCAAGCTTTAACTGnga ] consensusID : consensus_6475#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 267 fasta sequence [AGCTTTAACTGTGGATCAAATACATGCCAATAGGGAAAACGTTGTCAATCACTTCCAGTCAAGGCAAGCAGATACTGTGAATCATATACAGGTTATTCAGGATAACACTGCCAATCAGTTCCAGTTTAGACGAGCTGACACAGTCAACAAAATACAAACTATGCAGGATAGCACCACTGATCAGCCACGGTTCATCCAAGCATTAACTGTGAATCAAATACAGGCCAATGGGGAAAATACTGCAAATTACTTACAGCCAAATTATGC] [+] EMBL CF330617 [AGCTTTAACTGTGGATCAAATACATGCCAATAGGGAAAACGTTGTCAATCACTTCCAGTCAAGGCAAGCAGATACTGTGAATCATATACAGGTTATTCAGGATAACACTGCCAATCAGTTCCAGTTTAGACGAGCTGACACAGTCAACAAAATACAAACTATGCAGGATAGCACCACTGATCAGCCACGGTTCATCCAAGCATTAACTGTGAATCAAATACAGGCCAATGGGGAAAATACTGCAAATTACTTACAGCCAAATTATGC] [+] EMBL AA750546 [ TACATGCCAATAGGGAAAACGTTGTCAATCACTTCCAGTCAAGGCAAGCAGATACTGTGAATCATATACAGGTTATTCAGGATAACACTGCCAATCAGTTCCAGTTTAGACGAGCTGACACAGTCAACAAAATACAAACTATGCAGGATAGCACCACTGATCAGCCACGGTTCATCCAAGCATTAACTGTGAATCAAATACAGGCCAATGGGGAAAATACTGCA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6475#0 CAGCTCCTACAAGCTGACACTGTGAACCAAATACTCACAGATCAGGAAAATGCTGTCAGT 60 consensus_6475#1 ------------------------------------------------------------ consensus_6475#0 CAATTACAGTCGAGCCACACAGATTATTTTGTTCAAATACGACCTAGACAAGAATACGTT 120 consensus_6475#1 ------------------------------------------------------------ consensus_6475#0 ACCAATTACTCACAATCACAGTTGAGCCGTGCTGCCACTGTGAATCAAATAGAGACTAAT 180 consensus_6475#1 ------------------------------------------------------------ consensus_6475#0 CAAAGGAACATGTCAGGTCAGTTGCAGTCTAGCCAAGCAGATTCTCTGGATCAAATACAG 240 consensus_6475#1 ------------------------------------------------------------ consensus_6475#0 ACAGAGCAGGAAAGTTCTGCCAGTCGGTTACAGTCAAGCCAAGCAGACTCTTTCAATGAA 300 consensus_6475#1 ------------------------------------------------------------ consensus_6475#0 ATACATACTATACAAGAATACATTACTGAACAGTCAGAGTCACAAGTAAGCCATGCAAAT 360 consensus_6475#1 ------------------------------------------------------------ consensus_6475#0 CAAATACAGATTGATCTAGGAAACACTGTCGATCTGTTGCCGTCGAGCCAAGCAGACGCC 420 consensus_6475#1 --------------------------------------------------AGCTTTAACT 10 *** * consensus_6475#0 ATATTTCAAATGGAGACTACACAAGAATACATTACCAACCAGTCTCAGTCAAGACAAGCA 480 consensus_6475#1 GTGGATCAAATACATGCCAATAGGGAAAACGTTGTCAATCACTTCCAGTCAAGGCAAGCA 70 * ****** * * * *** ** ** *** ** * ******** ****** consensus_6475#0 GATATTGTGGATCATATGCAGGTTAATCAGGATAACACTGCTAATCAGTTCCATTTGAGA 540 consensus_6475#1 GATACTGTGAATCATATACAGGTTATTCAGGATAACACTGCCAATCAGTTCCAGTTTAGA 130 **** **** ******* ******* *************** *********** ** *** consensus_6475#0 CAAGCTGACACAGTCAACAGAATACAAACTATGCAGGAGAGCACCACTGATCAGCCACAG 600 consensus_6475#1 CGAGCTGACACAGTCAACAAAATACAAACTATGCAGGATAGCACCACTGATCAGCCACGG 190 * ***************** ****************** ******************* * consensus_6475#0 CTCATCCAAGCTTTAACTGTGAATCAAATACAGGTCAATGGGGAAAACACTGCCAATCAC 660 consensus_6475#1 TTCATCCAAGCATTAACTGTGAATCAAATACAGGCCAATGGGGAAAATACTGCAAATTAC 250 ********** ********************** ************ ***** *** ** consensus_6475#0 GTCCAGTCAAGGCAAGCAGATACTGTGAATCATATACAGCTTAATCAGGATAACACTGTC 720 consensus_6475#1 TTACAGCCAAATTATGC------------------------------------------- 267 * *** *** * ** consensus_6475#0 AATCAGTTCCAGTTGAGACGAGCTGACACAGTCAACAGAATACAAACTATGCAGGATAGC 780 consensus_6475#1 ------------------------------------------------------------ consensus_6475#0 ACCGCTGATCAGCCACATCTCATCCAAGCTTTAACTGTGGATCAAATA 828 consensus_6475#1 ------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||