These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6476#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1073 fasta sequence [ATGAGTTCAAGAAGGGATCGTCGTCATCCTCGTCCTCGGACTCCGACGACGACAAGAAGCACCACCACAAGTCCAAGTCCAAGAAGAAGCGGCTCTTCGGCCGGACGAACCCGCTACATCACGTCCTAGGAGGAGGCAAAGCTGCTGATCTTGTGCTGTGGAGGGACAAGCAGACGTCAGGGAGCATCCTGGCGGGAGTGACCGTGATCTGGTTGCTGTTCGAGGGGATCGGCTACCACCTCCTCACCTTCTTCTGCCACTCGCTCATGGTCTTCCTCACCGTCT-GCTTCGTC-TGGGCCAATGCCGCCTCCTTCATCAACAGGGGTCCTCCAAAGTTCCCAGATGCAATTCTGTCTGAAGTCCAATGCCTGAAGATTGCTCATATTCTGAGGAAAGAAATCAATGAGGCCTTCTTAACATTACGCCATGTCGCCTCCGGAAAAGACCTCAAAACATATCTTATGACAGTTGCAGGCCTCTGGTTCGTTTCTATAATTGGGAGCTGCTTCAGCTTCTTGACTTTGTCTTACACCATTTTCCTGATGGCATACACACTGCCAATGCTGTATGAGAAATACGAAGATGAAGTCGATGTCGTGGGCGAGAAGGCCCTAATCGAGCTCAAGAAGCAATATGCAGTGCTTGATCACAAGCTTCTCTCAAAGATCCCAATGTTAGCTGAGAAGAAACAGCACTAAACTGATGCTTTGAAGACCAAAGCCCCTTAATTTGCATGTTTCATCTTCAGCTCAGCACATCACCAAAGTAGTCTATTTGGGTTTCCTCTGTCATCTTATAGCAATATTTGGGATGACATCAGATAGAAATGGTTTTGATTCTCGAGCATCCGAAAACCGGGTTTTTTTTTGGAGCACTAGTACGGAGAACACTGTAGACGGTCACATGGAGTAGTTGCTTATGTTCCAGTAACTTTCAGTTCATATTTTTGAGCTTCTGTTTGGTCACAAGATACATATGACACACAATTTACTATGATTATTATTTGCATGTATTATTTGAGGTATTCTGAATGCTGAAGACCATACTAATTAGCAGATTAATTCATTTTGGTC] [+] EMBL AK069307 [ATGAGTTCAAGAAGGGATCGTCGTCATCCTCGTCCTCGGACTCCGACGACGACAAGAAGCACCACCACAAGTCCAAGTCCAAGAAGAAGCGGCTCTTCGGCCGGACGAACCCGCTACATCACGTCCTAGGAGGAGGCAAAGCTGCTGATCTTGTGCTGTGGAGGGACAAGCAGACGTCAGGGAGCATCCTGGCGGGAGTGACCGTGATCTGGTTGCTGTTCGAGGGGATCGGCTACCACCTCCTCACCTTCTTCTGCCACTCGCTCATGGTCTTCCTCACCGTCT GCTTCGTC TGGGCCAATGCCGCCTCCTTCATCAACAGGGGTCCTCCAAAGTTCCCAGATGCAATTCTGTCTGAAGTCCAATGCCTGAAGATTGCTCATATTCTGAGGAAAGAAATCAATGAGGCCTTCTTAACATTACGCCATGTCGCCTCCGGAAAAGACCTCAAAACATATCTTATGACAGTTGCAGGCCTCTGGTTCGTTTCTATAATTGGGAGCTGCTTCAGCTTCTTGACTTTGTCTTACACCATTTTCCTGATGGCATACACACTGCCAATGCTGTATGAGAAATACGAAGATGAAGTCGATGTCGTGGGCGAGAAGGCCCTAATCGAGCTCAAGAAGCAATATGCAGTGCTTGATCACAAGCTTCTCTCAAAGATCCCAATGTTAGCTGAGAAGAAACAGCACTAAACTGATGCTTTGAAGACCAAAGCCCCTTAATTTGCATGTTTCATCTTCAGCTCAGCACATCACCAAAGTAGTCTATTTGGGTTTCCTCTGTCATCTTATAGCAATATTTGGGATGACATCAGATAGAAATGGTTTTGATTCTCGAGCATCCGAAAACCGGGTTTTTTTTTGGAGCACTAGTACGGAGAACACTGTAGACGGTCACATGGAGTAGTTGCTTATGTTCCAGTAACTTTCAGTTCATATTTTTGAGCTTCTGTTTGGTCACAAGATACATATGACACACAATTTACTATGATTATTATTTGCATGTATTATTTGAGGTATTCTGAATGCTGAAGACCATACTAATTAGCAGATTAATTCATTTTGGTC] [+] EMBL AY164904 [ATGAGTTCAAGAAGGGATCGTCGTCATCCTCGTCCTCGGACTCCGACGACGACAAGAAGCACCACCACAAGTCCAAGTCCAAGAAGAAGCGGCTCTTCGGCCGGACGAACCCGCTACATCACGTCCTAGGAGGAGGCAAAGCTGCTGATCTTGTGCTGTGGAGGGACAAGCAGACGTCAGGGAGCATCCTGGCGGGAGTGACCGTGATCTGGTTGCTGTTCGAGGGGATCGGCTACCACCTCCTCACCTTCTTCTGCCACTCGCTCATCGTCTTCCTCACCGTCT GCTTCGTC TGGGCCAATGCCGCCTCCTTCATCAACAGGGGTCCTCCAAAGTTCCCAGATGCAATTCTGTCTGAAGTCCAATGCCTGAAGATTGCTCATATTCTGAGGAAAGAAATCAATGAGGCCTTCTTAACATTACGCCATGTCGCCTCCGGAAAAGACCTCAAAACATATCTTATGACAGTTGCAGGCCTCTGGTTCGTTTCTATAATTGGGAGCTGCTTCAGCTTCTTGACTTTGTCTTACACCATTTTCCTGATGGCATACACACTGCCAATGCTGTATGAGAAATACGAAGATGAAGTCGATGTCGTGGGCGAGAAGGCCCTAATCGAGCTCAAGAAGCAATATGCAGTGCTTGATCACAAGCTTCTCTCAAAGATCCCAATGTTAGCTGAGAAGAAACAGCACT AACTGATGCTTTGAAGACCAAAGCCCCTTAATTTGCATGTTTCATCTTCAGCTCAGCACATCACCAAAGTAGTCTATTTGGGTTTCCTCTGTCATCTTATAGCAATATTTGGGATGACATCAGATAGAAATGGTTTTGATTCTCGAGCATCCGAAAACCGGGTTTTTTTTTGGAGCACTAGTACGGAGAACACTGTCGACGGTCACATGGAGTAGTTGCTTATGTTCCAGTAACTTTCAGTTCATATTTTTGAGCTTCTGTTTGGTCACAAGATACATATGACACACAATTTACTATGATTATTATTTGCATGTATT ] [+] EMBL C72898 [ATGAGTTCAAGAAGGGATCGTCGTCATCCTCGTCCTCGGACTCCGACGACGACAAGAAGCACCACCACAAGTCCAAGTCCAAGAAGAAGCGGCTCTTCGGCCGGACGAACCCGCTACATCACGTCCTAGGAGGAGGCAAAGCTGCTGATCTTGTGCTGTGGAGGGACAAGCAGACGTCAGGGAGCATCCTGGCGGGAGTNACCGTGATCTGGTTGCTGTTCGAGGGGATCGGCTACCACCTCCTCACCTTCTTCTG CAATCG TCATGGTCTTCC CACCGTCTGGNTTCGTCTTGGGCnat ] consensusID : consensus_6476#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 580 fasta sequence [ATCTTATGACANTTGCAGGCCTCTGGTTCGTTTCTATAATTGGGANCTGCTTCAGCTTCTTGACTTTGTCTTACACCATTTNCCTGATGGCATACACACTGCCAATGCTGTATGAGAAATACGAAGATGAAGTCGATGTCGTGGGCGAGAAGGCCCTAATCGAGCTCAAGAAGCAATATGCAGTGCTTGATCACAAGCTTCTCTCAAAGATCCCAATGTTAGCTGAGAAGAAACAGCACTAAACTGATGCTTTGAAGACCAAAGCCCCTTAATTTGCATGTTTCATCTTCAGCTCAGCACATCACCAAAGTAGTCTATTTGGGTTTCCTCTGTCATCTTATAGCAATATTTGGGATGACATCAGATAGAAATGGTTTTGATTCTCGAGCATCCGAAAACCGGGTTTTTTTTTGGAGCACTAGTACGGAGAACACTGTAGACGGTCACATGGAGTAGTTGCTTATGTTCCAGTAACTTTCAGTTCATATTTTTGAGCTTCTGTTTGGTCACAAGATACATATGACACACAATTTACTATGATTATTATTTGCATGTATTATTTGAGGTAAAAAAAAAAAAA] [+] EMBL AU101192 [ATCTTATGACANTTGCAGGCCTCTGGTTCGTTTCTATAATTGGGANCTGCTTCAGCTTCTTGACTTTGTCTTACACCATTTNCCTGATGGCATACACACTGCCAATGCTGTATGAGAAATACGAAGATGAAGTCGATGTCGTGGGCGAGAAGGCCCTAATCGAGCTCAAGAAGCAATATGCAGTGCTTGATCACAAGCTTCTCTCAAAGATCCCAATGTTAGCTGAGAAGAAACAGCACTAAACTGATGCTTTGAAGACCAAAGCCCCTTAATTTGCATGTTTCATCTTCAGCTCAGCACATCACCAAAGTAGTCTATTTGGGTTTCCTCTGTCATCTTATAGCAATATTTGGGATGACATCAGATAGAAATGGTTTTGATTCTCGAGCATCCGAAAACCGGGTTTTTTTTTGGAGCACTAGTACGGAGAACACTGTAGACGGTCACATGGAGTAGTTGCTTATGTTCCAGTAACTTTCAGTTCATATTTTTGAGCTTCTGTTTGGTCACAAGATACATATGACACACAATTTACTATGATTATTATTTGCATGTATTATTTGAGGTAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6476#0 ATGAGTTCAAGAAGGGATCGTCGTCATCCTCGTCCTCGGACTCCGACGACGACAAGAAGC 60 consensus_6476#1 ------------------------------------------------------------ consensus_6476#0 ACCACCACAAGTCCAAGTCCAAGAAGAAGCGGCTCTTCGGCCGGACGAACCCGCTACATC 120 consensus_6476#1 ------------------------------------------------------------ consensus_6476#0 ACGTCCTAGGAGGAGGCAAAGCTGCTGATCTTGTGCTGTGGAGGGACAAGCAGACGTCAG 180 consensus_6476#1 ------------------------------------------------------------ consensus_6476#0 GGAGCATCCTGGCGGGAGTGACCGTGATCTGGTTGCTGTTCGAGGGGATCGGCTACCACC 240 consensus_6476#1 ------------------------------------------------------------ consensus_6476#0 TCCTCACCTTCTTCTGCCACTCGCTCATGGTCTTCCTCACCGTCTGCTTCGTCTGGGCCA 300 consensus_6476#1 ------------------------------------------------------------ consensus_6476#0 ATGCCGCCTCCTTCATCAACAGGGGTCCTCCAAAGTTCCCAGATGCAATTCTGTCTGAAG 360 consensus_6476#1 ------------------------------------------------------------ consensus_6476#0 TCCAATGCCTGAAGATTGCTCATATTCTGAGGAAAGAAATCAATGAGGCCTTCTTAACAT 420 consensus_6476#1 ------------------------------------------------------------ consensus_6476#0 TACGCCATGTCGCCTCCGGAAAAGACCTCAAAACATATCTTATGACAGTTGCAGGCCTCT 480 consensus_6476#1 ------------------------------------ATCTTATGACANTTGCAGGCCTCT 24 *********** ************ consensus_6476#0 GGTTCGTTTCTATAATTGGGAGCTGCTTCAGCTTCTTGACTTTGTCTTACACCATTTTCC 540 consensus_6476#1 GGTTCGTTTCTATAATTGGGANCTGCTTCAGCTTCTTGACTTTGTCTTACACCATTTNCC 84 ********************* *********************************** ** consensus_6476#0 TGATGGCATACACACTGCCAATGCTGTATGAGAAATACGAAGATGAAGTCGATGTCGTGG 600 consensus_6476#1 TGATGGCATACACACTGCCAATGCTGTATGAGAAATACGAAGATGAAGTCGATGTCGTGG 144 ************************************************************ consensus_6476#0 GCGAGAAGGCCCTAATCGAGCTCAAGAAGCAATATGCAGTGCTTGATCACAAGCTTCTCT 660 consensus_6476#1 GCGAGAAGGCCCTAATCGAGCTCAAGAAGCAATATGCAGTGCTTGATCACAAGCTTCTCT 204 ************************************************************ consensus_6476#0 CAAAGATCCCAATGTTAGCTGAGAAGAAACAGCACTAAACTGATGCTTTGAAGACCAAAG 720 consensus_6476#1 CAAAGATCCCAATGTTAGCTGAGAAGAAACAGCACTAAACTGATGCTTTGAAGACCAAAG 264 ************************************************************ consensus_6476#0 CCCCTTAATTTGCATGTTTCATCTTCAGCTCAGCACATCACCAAAGTAGTCTATTTGGGT 780 consensus_6476#1 CCCCTTAATTTGCATGTTTCATCTTCAGCTCAGCACATCACCAAAGTAGTCTATTTGGGT 324 ************************************************************ consensus_6476#0 TTCCTCTGTCATCTTATAGCAATATTTGGGATGACATCAGATAGAAATGGTTTTGATTCT 840 consensus_6476#1 TTCCTCTGTCATCTTATAGCAATATTTGGGATGACATCAGATAGAAATGGTTTTGATTCT 384 ************************************************************ consensus_6476#0 CGAGCATCCGAAAACCGGGTTTTTTTTTGGAGCACTAGTACGGAGAACACTGTAGACGGT 900 consensus_6476#1 CGAGCATCCGAAAACCGGGTTTTTTTTTGGAGCACTAGTACGGAGAACACTGTAGACGGT 444 ************************************************************ consensus_6476#0 CACATGGAGTAGTTGCTTATGTTCCAGTAACTTTCAGTTCATATTTTTGAGCTTCTGTTT 960 consensus_6476#1 CACATGGAGTAGTTGCTTATGTTCCAGTAACTTTCAGTTCATATTTTTGAGCTTCTGTTT 504 ************************************************************ consensus_6476#0 GGTCACAAGATACATATGACACACAATTTACTATGATTATTATTTGCATGTATTATTTGA 1020 consensus_6476#1 GGTCACAAGATACATATGACACACAATTTACTATGATTATTATTTGCATGTATTATTTGA 564 ************************************************************ consensus_6476#0 GGTATTCTGAATGCTGAAGACCATACTAATTAGCAGATTAATTCATTTTGGTC 1073 consensus_6476#1 GGTA----AAAAAAAAAAAA--------------------------------- 580 **** ** ** * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||