These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6482#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1871 fasta sequence [ACGCCGCCGCCGCGGGCACCGCCCACCTGCGGCGGCGGCGGCGGCGGCGATGGCGATGGCGACGAGTCGCGCACGCAGCGAATCGGGCGTTGTCACGCGTGCGCGCGGTGGCTGCCGGAATCTGTCTGTTGTCAGCGTGGTCACCGAACCTGAACCTGGCAGTACGCATGCTCGGCTGCTCGCTCGCACGCGCGTGCAGTCACCGGCGCAATCTACCATTGCAGAGGAGTAGGAGGAGGGCTAGGGCTAGGAGTTGGCCTCTACTAGCTGCTGCATTCGGGCTACGAAAGCAACCAAAATAATGGAGGGAATCATCAAGATCGATGTCGATCGAATTAATTAAGGAGAATTGTATGTGTGTAGGGGTTAGGGAAAGCCCTCACTACTCTGAACTCTGAAGAAACAATCTATGCATAGTACTGTACCTTGACGAACTCTTTCTTTGCAAGTCAAGTTAGAGCCATCACCTATAGCAAGGTAGGTGAAATGATTGACCTTATGGGCGCCTCTCCAAAAATCGTAAACAAAGTCCCATCAGAGACTCAGATACATGGTAGAGGCTGACGATCGATCCAAACAAGAAATTCCACGGCCGGTGAGTGAAAAAGATAAGGATAACTACAGTGCGCAGACCCTGCATGCCATGGTGCAAAAGCTTATAGAATTCAGATGCCATAAATACTACTATCCCTGGAGCTAAAGGTTGGTGGGTCGAGGAGACCATCTTGTCACCAAGAAAGCTCTCAGAACTCTCCATCTCTAGGCCAGCTTAGGGCTGGACCAGCTAGCAGCCATTGGTAGCCTGTATCAGTTCATAAGGGGAGGAGGTGAAGGCAAGGAGGCAGCTAGCCAAGAAGAAGAGCAGACACCAAAACTCAGGAAGGTGAATATATTCTTGAAAAGATCCGATGGAAGCAAGAAGGCCTACCCCTACCAGGAGAAGCAGATCTGCTGAGTTCCACAATTTTTCAGAAAGGAGGAGAAGGGATAGGATCAATGAGAAGCTGAAGGCGCTGCAAGAGCTACTTCCAAATTGCACCAAGACCGACAAAGTTTCGATGCTGGATGAAGCGATCGACTACCTGAAATCACTCCAACTACAACTCCAGATGCTGGTCATAGGGAAGGGAATGGCACCGGTTGTTCCTCCTGAGCTGCAACAATACATGCACTATATCACAGCTGATCCTTCTCAAATTCCTCCCATACGCCCCTCCGAGCCGCGGCCATTTCAGATAACCCACGCCACCCAACAGAGACAGTCTAACGTCGAGTCGGATTTCTTGAGCCAGATGC-AGAATTTGCACCCTTCAGAGCCACCTCAAAATTTCCTCAGACCACCGAAATTGCAGTTGTACACGCCGGAGCAGCAGAGAAGAGGTCTAGCTAGTAGCAGTGGCCACAACAGCGGTTGGATCACGGAGAGGAATTCATCGTACAACTTCTTGGAGTGATGACCACCTGACGAGTTACTAAGAGATCCAGAAGCAGATGCAGTCTAGACTCTACTACTCTAGACTGCATAACCTTCATTCAGTTCATGGTGTTCCTGGAGATGAAACAAGTTGCTCAATGGAGTGATGAATCTACTGCATGCAGTTAACTAGTTAATTTTGTACGTC-AATAAATAGTGGTGATCCTGATCTTGCTTCCTCGTCATGTTCTGTGCATACAAGACCTAAAGCG-TTTTTGTGATCTCTGTACTGTATATTAGCAGACAGTCTACTTCCTGCTGCTGATGCTTATGTGCTCTGACAAGCAAATCAACATGGCTAATTTAATCAAAAAATTTAGTGAATTGCAGCANAAAAAAAAAAAAAAAAAAAAAAAATTTTTATTAAAAACCACTGTCATGCCGTTACGTACCGTAT] [+] EMBL AK106689 [ACGCCGCCGCCGCGGGCACCGCCCACCTGCGGCGGCGGCGGCGGCGGCGATGGCGATGGCGACGAGTCGCGCACGCAGCGAATCGGGCGTTGTCACGCGTGCGCGCGGTGGCTGCCGGAATCTGTCTGTTGTCAGCGTGGTCACCGAACCTGAACCTGGCAGTACGCATGCTCGGCTGCTCGCTCGCACGCGCGTGCAGTCACCGGCGCAATCTACCATTGCAGAGGAGTAGGAGGAGGGCTAGGGCTAGGAGTTGGCCTCTACTAGCTGCTGCATTCGGGCTACGAAAGCAACCAAAATAATGGAGGGAATCATCAAGATCGATGTCGATCGAATTAATTAAGGAGAATTGTATGTGTGTAGGGGTTAGGGAAAGCCCTCACTACTCTGAACTCTGAAGAAACAATCTATGCATAGTACTGTACCTTGACGAACTCTTTCTTTGCAAGTCAAGTTAGAGCCATCACCTATAGCAAGGTAGGTGAAATGATTGACCTTATGGGCGCCTCTCCAAAAATCGTAAACAAAGTCCCATCAGAGACTCAGATACATGGTAGAGGCTGACGATCGATCCAAACAAGAAATTCCACGGCCGGTGAGTGAAAAAGATAAGGATAACTACAGTGCGCAGACCCTGCATGCCATGGTGCAAAAGCTTATAGAATTCAGATGCCATAAATACTACTATCCCTGGAGCTAAAGGTTGGTGGGTCGAGGAGACCATCTTGTCACCAAGAAAGCTCTCAGAACTCTCCATCTCTAGGCCAGCTTAGGGCTGGACCAGCTAGCAGCCATTGGTAGCCTGTATCAGTTCATAAGGGGAGGAGGTGAAGGCAAGGAGGCAGCTAGCCAAGAAGAAGAGCAGACACCAAAACTCAGGAAGGTGAATATATTCTTGAAAAGATCCGATGGAAGCAAGAAGGCCTACCCCTACCAGGAGAAGCAGATCTGCTGAGTTCCACAATTTTTCAGAAAGGAGGAGAAGGGATAGGATCAATGAGAAGCTGAAGGCGCTGCAAGAGCTACTTCCAAATTGCACCAAGACCGACAAAGTTTCGATGCTGGATGAAGCGATCGACTACCTGAAATCACTCCAACTACAACTCCAGATGCTGGTCATAGGGAAGGGAATGGCACCGGTTGTTCCTCCTGAGCTGCAACAATACATGCACTATATCACAGCTGATCCTTCTCAAATTCCTCCCATACGCCCCTCCGAGCCGCGGCCATTTCAGATAACCCACGCCACCCAACAGAGACAGTCTAACGTCGAGTCGGATTTCTTGAGCCAGATGC AGAATTTGCACCCTTCAGAGCCACCTCAAAATTTCCTCAGACCACCGAAATTGCAGTTGTACACGCCGGAGCAGCAGAGAAGAGGTCTAGCTAGTAGCAGTGGCCACAACAGCGGTTGGATCACGGAGAGGAATTCATCGTACAACTTCTTGGAGTGATGACCACCTGACGAGTTACTAAGAGATCCAGAAGCAGATGCAGTCTAGACTCTACTACTCTAGACTGCATAACCTTCATTCAGTTCATGGTGTTCCTGGAGATGAAACAAGTTGCTCAATGGAGTGATGAATCTACTGCATGCAGTTAACTAGTTAATTTTGTACGTC AATAAATAGTGGTGATCCTGATCTTGCTTCCTCGTCATGTTCTGTGCATACAAGACCTAAAGCG TTTTTGTGATCTCTGTACTGTATATTAGCAGACAGTCTACTTCCTGCTGCTGATGCTTATGTGCTCTGACAAGCAAATCAACATGGCTAAT ] [+] EMBL BI813607 [ gagcGTCTAAC TCGAGTCGGATTTCTTGACCCAGATCCAAGAATTTGCACCCTTCAGAGCCACCTCAAAATTTCCTCAGACCACCAAAATTGCAGTTGTACACGCCGGAGCAGCAGAGAAGAGGTCTAGCTAGTAGCAGTGGCCACAACAGCGGTTGGATCACGGAGAGGAATTCATCGTACAACTTCTTGGAGTGATGACCACCTGACGAGTTACTAAGAGATCCAGAAGCAGATGCAGTCTAGACTCTACTACTCTAGACTGCATAACCTTCATTCAGTTCATGGTGTTCCTGGAGATGAAACAAGTTGCTCAATGGAGTGATGAATCTACTGCATGCAGTTAACTAGTTAATTTTGTACGTCAAATAAATAGTGGTGATCCTGATCTTGCTTCCTCGTCATGTTCTGTGCATACAAGACCTAAAGCGTTTTTTGTGATCTCTGTACTGTATATTAGCAGACAGTCTACTTCCTGCTGCTGATGCTTATGTGCTCTGACAAGCAAATC ACATGGCTAATTTAATCAAAAAA ] [+] EMBL CF330665 [ AAGACCTAAAGCG TTTTTGTGATCTCTGTACTGTATATTAGCAGACAGTCTACTTCCTGCTGCTGATGCTTATGTGCTCTGACAAGCAAATCAACATGGCTAATTTAATCAAGTATTTTAGTGAATTGCAGCANAAAAAAAAAAAAAAAAAAAAAAAATTTTTATTAAAAACCACTGTCATGCCGTTACGTACCGTAT] consensusID : consensus_6482#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 223 fasta sequence [ATGGATTGAAGGAGTAGAAAGTGGTGATCCTGATCTTGCTTCCTCGTCATGTTCTGGGCAAACAAGCCCTAAAGGGTTTTTGTGATCTCTGTACGGTATATTAGCAGACAGTTTACTTCCTGCTGTTGAGGTTTATGTGTTTTGACAAGCAAATCAACATGGTTAATTTAATCAAGTACTCCAGTGAATTGCAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CF330664 [ATGGATTGAAGGAGTAGAAAGTGGTGATCCTGATCTTGCTTCCTCGTCATGTTCTGGGCAAACAAGCCCTAAAGGGTTTTTGTGATCTCTGTACGGTATATTAGCAGACAGTTTACTTCCTGCTGTTGAGGTTTATGTGTTTTGACAAGCAAATCAACATGGTTAATTTAATCAAGTACTCCAGTGAATTGCAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6482#0 ACGCCGCCGCCGCGGGCACCGCCCACCTGCGGCGGCGGCGGCGGCGGCGATGGCGATGGC 60 consensus_6482#1 ------------------------------------------------------------ consensus_6482#0 GACGAGTCGCGCACGCAGCGAATCGGGCGTTGTCACGCGTGCGCGCGGTGGCTGCCGGAA 120 consensus_6482#1 ------------------------------------------------------------ consensus_6482#0 TCTGTCTGTTGTCAGCGTGGTCACCGAACCTGAACCTGGCAGTACGCATGCTCGGCTGCT 180 consensus_6482#1 ------------------------------------------------------------ consensus_6482#0 CGCTCGCACGCGCGTGCAGTCACCGGCGCAATCTACCATTGCAGAGGAGTAGGAGGAGGG 240 consensus_6482#1 ------------------------------------------------------------ consensus_6482#0 CTAGGGCTAGGAGTTGGCCTCTACTAGCTGCTGCATTCGGGCTACGAAAGCAACCAAAAT 300 consensus_6482#1 ------------------------------------------------------------ consensus_6482#0 AATGGAGGGAATCATCAAGATCGATGTCGATCGAATTAATTAAGGAGAATTGTATGTGTG 360 consensus_6482#1 ------------------------------------------------------------ consensus_6482#0 TAGGGGTTAGGGAAAGCCCTCACTACTCTGAACTCTGAAGAAACAATCTATGCATAGTAC 420 consensus_6482#1 ------------------------------------------------------------ consensus_6482#0 TGTACCTTGACGAACTCTTTCTTTGCAAGTCAAGTTAGAGCCATCACCTATAGCAAGGTA 480 consensus_6482#1 ------------------------------------------------------------ consensus_6482#0 GGTGAAATGATTGACCTTATGGGCGCCTCTCCAAAAATCGTAAACAAAGTCCCATCAGAG 540 consensus_6482#1 ------------------------------------------------------------ consensus_6482#0 ACTCAGATACATGGTAGAGGCTGACGATCGATCCAAACAAGAAATTCCACGGCCGGTGAG 600 consensus_6482#1 ------------------------------------------------------------ consensus_6482#0 TGAAAAAGATAAGGATAACTACAGTGCGCAGACCCTGCATGCCATGGTGCAAAAGCTTAT 660 consensus_6482#1 ------------------------------------------------------------ consensus_6482#0 AGAATTCAGATGCCATAAATACTACTATCCCTGGAGCTAAAGGTTGGTGGGTCGAGGAGA 720 consensus_6482#1 ------------------------------------------------------------ consensus_6482#0 CCATCTTGTCACCAAGAAAGCTCTCAGAACTCTCCATCTCTAGGCCAGCTTAGGGCTGGA 780 consensus_6482#1 ------------------------------------------------------------ consensus_6482#0 CCAGCTAGCAGCCATTGGTAGCCTGTATCAGTTCATAAGGGGAGGAGGTGAAGGCAAGGA 840 consensus_6482#1 ------------------------------------------------------------ consensus_6482#0 GGCAGCTAGCCAAGAAGAAGAGCAGACACCAAAACTCAGGAAGGTGAATATATTCTTGAA 900 consensus_6482#1 ------------------------------------------------------------ consensus_6482#0 AAGATCCGATGGAAGCAAGAAGGCCTACCCCTACCAGGAGAAGCAGATCTGCTGAGTTCC 960 consensus_6482#1 ------------------------------------------------------------ consensus_6482#0 ACAATTTTTCAGAAAGGAGGAGAAGGGATAGGATCAATGAGAAGCTGAAGGCGCTGCAAG 1020 consensus_6482#1 ------------------------------------------------------------ consensus_6482#0 AGCTACTTCCAAATTGCACCAAGACCGACAAAGTTTCGATGCTGGATGAAGCGATCGACT 1080 consensus_6482#1 ------------------------------------------------------------ consensus_6482#0 ACCTGAAATCACTCCAACTACAACTCCAGATGCTGGTCATAGGGAAGGGAATGGCACCGG 1140 consensus_6482#1 ------------------------------------------------------------ consensus_6482#0 TTGTTCCTCCTGAGCTGCAACAATACATGCACTATATCACAGCTGATCCTTCTCAAATTC 1200 consensus_6482#1 ------------------------------------------------------------ consensus_6482#0 CTCCCATACGCCCCTCCGAGCCGCGGCCATTTCAGATAACCCACGCCACCCAACAGAGAC 1260 consensus_6482#1 ------------------------------------------------------------ consensus_6482#0 AGTCTAACGTCGAGTCGGATTTCTTGAGCCAGATGCAGAATTTGCACCCTTCAGAGCCAC 1320 consensus_6482#1 ------------------------------------------------------------ consensus_6482#0 CTCAAAATTTCCTCAGACCACCGAAATTGCAGTTGTACACGCCGGAGCAGCAGAGAAGAG 1380 consensus_6482#1 ------------------------------------------------------------ consensus_6482#0 GTCTAGCTAGTAGCAGTGGCCACAACAGCGGTTGGATCACGGAGAGGAATTCATCGTACA 1440 consensus_6482#1 ------------------------------------------------------------ consensus_6482#0 ACTTCTTGGAGTGATGACCACCTGACGAGTTACTAAGAGATCCAGAAGCAGATGCAGTCT 1500 consensus_6482#1 ------------------------------------------------------------ consensus_6482#0 AGACTCTACTACTCTAGACTGCATAACCTTCATTCAGTTCATGGTGTTCCTGGAGATGAA 1560 consensus_6482#1 ------------------------------------------------------------ consensus_6482#0 ACAAGTTGCTCAATGGAGTGATGAATCTACTGCATGCAGTTAACTAGTTAATTTTGTACG 1620 consensus_6482#1 --------------------------------------------------ATGGATTGAA 10 ** * consensus_6482#0 TCAATAAATAGTGGTGATCCTGATCTTGCTTCCTCGTCATGTTCTGTGCATACAAGACCT 1680 consensus_6482#1 GGAGTAGAAAGTGGTGATCCTGATCTTGCTTCCTCGTCATGTTCTGGGCAAACAAGCCCT 70 * ** * ************************************* *** ***** *** consensus_6482#0 AAAGCGTTTTTGTGATCTCTGTACTGTATATTAGCAGACAGTCTACTTCCTGCTGCTGAT 1740 consensus_6482#1 AAAGGGTTTTTGTGATCTCTGTACGGTATATTAGCAGACAGTTTACTTCCTGCTGTTGAG 130 **** ******************* ***************** ************ *** consensus_6482#0 GCTTATGTGCTCTGACAAGCAAATCAACATGGCTAATTTAATCAAAAAATTTAGTGAATT 1800 consensus_6482#1 GTTTATGTGTTTTGACAAGCAAATCAACATGGTTAATTTAATCAAGTACTCCAGTGAATT 190 * ******* * ******************** ************ * * ******** consensus_6482#0 GCAGCANAAAAAAAAAAAAAAAAAAAAAAAATTTTTATTAAAAACCACTGTCATGCCGTT 1860 consensus_6482#1 GCAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA--------------------------- 223 ****** ************************ consensus_6482#0 ACGTACCGTAT 1871 consensus_6482#1 ----------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||