These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6484#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 220 fasta sequence [CATTCCCATCACAACCATACGCAGCCTGGCAAGCCATACACAGTGTCAACAGCCTGGTGGTTGCCTCAATGCAGTGCAGCTCAACTCNACCATTCAATTTGCTGTTTGCTGCTCCACTTGCCCTGCTATTCCCAGTACGGGCAACACCTGTCTGTTGCCCAGCATGCCATTCAATTGCAATCGGGCCGAACTGCTGCTGGTGGCAGCAGGCTGTGTTTTG] [+] EMBL CB965657 [CATTCCCATCACAACCATACGCAGCCTGGCAAGCCATACACAGTGTCAACAGCCTGGTGGTTGCCTCAATGCAGTGCAGCTCAACTCNACCATTCAATTTGCTGTTTGCTGCTCCACTTGCCCTGCTATTCCCAGTACGGGCAACACCTGTCTGTTGCCCAGCATGCCATTCAATTGCAATCGGGCCGAACTGCTGCTGGTGGCAGCAGGCTGTGTTTTG] consensusID : consensus_6484#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 149 fasta sequence [CAGCTCAACTCCACATTCAATTGCGTTGCTGCTCCACATGACCTGCTTTCCCAGTACGTGGCAACACATGTCTGTTGCCCAGCATGCCATTCAATTGCAATCTGTGCCCACACTGCTGCTGGTGGCAGCAGGCTGGTATTTGCGTTCAT] [+] EMBL BU673877 [CAGCTCAACTCCACATTCAATTGCGTTGCTGCTCCACATGACCTGCTTTCCCAGTACGTGGCAACACATGTCTGTTGCCCAGCATGCCATTCAATTGCAATCTGTGCCCACACTGCTGCTGGTGGCAGCAGGCTGGTATTTGCGTTCAT] consensusID : consensus_6484#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 121 fasta sequence [TTCATCCTGCTCCACAATTCCCACCACCAACATCACGCAGCCTGGCAAGCCATCAACAGTGTCAACAGCCTGGTGGTTGCCTCAATGCAGTTGCAGCTCAACTCGACCATTCAATTTGCTG] [+] EMBL CB965699 [TTCATCCTGCTCCACAATTCCCACCACCAACATCACGCAGCCTGGCAAGCCATCAACAGTGTCAACAGCCTGGTGGTTGCCTCAATGCAGTTGCAGCTCAACTCGACCATTCAATTTGCTG] consensusID : consensus_6484#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 117 fasta sequence [CATACGCAGCCTGGCAAGCCATCAAAGTTGTCAACGCCATGGGTGTGCACTCAATGCAGTGCAGCTCAACTCACCATTCAATTTGCTGTTTGCTGCTCCACTTGCCCTGCATTTCCC] [+] EMBL CB965193 [CATACGCAGCCTGGCAAGCCATCAAAGTTGTCAACGCCATGGGTGTGCACTCAATGCAGTGCAGCTCAACTCACCATTCAATTTGCTGTTTGCTGCTCCACTTGCCCTGCATTTCCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6484#2 TTCATCCTGCTCCACAATTCCCACCACCAACATC--ACGCAGCCTGGCAAGCCATCAACA 58 consensus_6484#3 ------------------------------CAT---ACGCAGCCTGGCAAGCCATCAAAG 27 consensus_6484#0 ---------------CATTCCCATCACAACCAT---ACGCAGCCTGGCAAGCCATACACA 42 consensus_6484#1 -CAGCTCAACTCCACATTCAATTGCGTTGCTGCTCCACATGACCTGCTTTCCCAGTA--C 57 ** **** *** consensus_6484#2 GTGTCAACAGCCTGGTGGTTGCCTCA-ATGCAGTTGCAGCTCAACTCGACCATTCAAT-T 116 consensus_6484#3 TTGTCAACGCCATGGGTGTGCACTCA-ATGCAGT-GCAGCTCAACTC-ACCATTCAAT-T 83 consensus_6484#0 GTGTCAACAGCCTGGTGGTTGCCTCA-ATGCAGT-GCAGCTCAACTCNACCATTCAAT-T 99 consensus_6484#1 GTGGCAACA-CATGTCTGTTGCCCAGCATGCCATTCAATTGCAATCTGTGCCCACACTGC 116 ** **** * ** ** * **** * * *** * ** * consensus_6484#2 TGCTG------------------------------------------------------- 121 consensus_6484#3 TGCTGTTTGCTGCTCCACTTGCCCTGCATTTCCC-------------------------- 117 consensus_6484#0 TGCTGTTTGCTGCTCCACTTGCCCTGCTATTCCCAGTACGGGCAACACCTGTCTGTTGCC 159 consensus_6484#1 TGCTGGTGGCAGCAGGCTGGTATTTGCGTTCAT--------------------------- 149 ***** consensus_6484#2 ------------------------------------------------------------ consensus_6484#3 ------------------------------------------------------------ consensus_6484#0 CAGCATGCCATTCAATTGCAATCGGGCCGAACTGCTGCTGGTGGCAGCAGGCTGTGTTTT 219 consensus_6484#1 ------------------------------------------------------------ consensus_6484#2 - consensus_6484#3 - consensus_6484#0 G 220 consensus_6484#1 - |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||