These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6497#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1329 fasta sequence [TCGGCTCATCCTGCTGCTCCGCCCTTCTCAAGATCACCAAGCAGCCGCAGTAGCTCGGCGAGCCGGCAGCCGACGGGTCCAATGGCGCAGG-ATGATTCGGTTGTTTCTGCTCAGTGGCTGCATGAGCACTTAGGGCAGCCTGATGTTAAGGTGCTGGATGCTTCCTGGTACATGCCTGTAGAGAAGAGGGATCCATGGCAAGAATACCAGGTGGCCCATATCCCTGGTGCGCTGTTCTTCGACATAGATGGCATAGTTGACCTGACAACTGATTTGCCACACATGCTGCCATCACAAGAGGCTTTTGCAGCCGCAGTTTCTGCGCTCGATATAAAAAACCATGATAAAGTTATTGTTTATGATGGAAAGGGATTTTTCAGTGCACCTCGTGTATGGT-GGATGTTCAGAGTTTATGGACACAATAAAATTTGGGTGTTAGAT--GGAGGTTTACCTCAGTGGCGAACTTCTGGATTTGTTCTTGAGAGTAGCACCCCTGGTGATGCAGTTCAGAAAACTAAAGCTGCTAACAGTGTTGTTGAAAGGATTTATAATGGTCAACTGGCAAGTGATGTAACATTTCAGACTGAATTTCAGCCTCATATATTCTGGACACTAGAAAAGGTTAAACATAACATGGATGCACAGTCTCACCAAGTCGTTGATGCCCGATCAAAGGGCAGATTTGATGGTGTAGCACCAGAACCACGGGAAGGAGTAAGAAGTGGACATATCCCAGGGACAAAATGTGTTCCATTCCTTGAGATGTTTGATGATGCACCAATGCTTCTCCCTGCAGATGAGATCCGTAAAAAGTTTGAGCAAGCAGGGATATCCCTTGATCG-CCCCATTGTAGTCACTTGTGGATCTGGTGTAACTGCCTGCATACTTGCTTTGGGACTCTATAGAATTGGGAAGCAAGATATTCCAGTTTATGATGGATCTTGGACAGAATGGGAAGCTCTACCGGATCATGATTATCCAAAAGTTACCTCCAATGGTTCTTAAAATCATCAGCTCCGAAATGATGGATTCATCTGCTGCATTTTTCACCATTCAGTTTAGATTGTCAGCTGGACTGTGTTCTCTTTGACATGCTTAGCGTTTGAATCAAAAGGAAGCGGAAATGTGCACTCTTGGCAATTTTGATGAGGCCATATTCAATATTAAACTTAGATCGATGATGTACTGAATGTTATCGTTAAACAATAATAAGCATACCAATTGATTTTATATCAGAATGACAAACTGTGTTGTCACTACATTATTTTTTTTTTATTAGTTATGTGCTCTGTAACAGTGCAATAAAATGAATTTGTTTACCACAAAAAA] [+] EMBL AK066425 [TCGGCTCATCCTGCTGCTCCGCCCTTCTCAAGATCACCAAGCAGCCGCAGTAGCTCGGCGAGCCGGCAGCCGACGGGTCCAATGGCGCAGG ATGATTCGGTTGTTTCTGCTCAGTGGCTGCATGAGCACTTAGGGCAGCCTGATGTTAAGGTGCTGGATGCTTCCTGGTACATGCCTGTAGAGAAGAGGGATCCATGGCAAGAATACCAGGTGGCCCATATCCCTGGTGCGCTGTTCTTCGACATAGATGGCATAGTTGACCTGACAACTGATTTGCCACACATGCTGCCATCACAAGAGGCTTTTGCAGCCGCAGTTTCTGCGCTCGATATAAAAAACCATGATAAAGTTATTGTTTATGATGGAAAGGGATTTTTCAGTGCACCTCGTGTATGGT GGATGTTCAGAGTTTATGGACACAATAAAATTTGGGTGTTAGAT GGAGGTTTACCTCAGTGGCGAACTTCTGGATTTGTTCTTGAGAGTAGCACCCCTGGTGATGCAGTTCAGAAAACTAAAGCTGCTAACAGTGTTGTTGAAAGGATTTATAATGGTCAACTGGCAAGTGATGTAACATTTCAGACTGAATTTCAGCCTCATATATTCTGGACACTAGAAAAGGTTAAACATAACATGGATGCACAGTCTCACCAAGTCGTTGATGCCCGATCAAAGGGCAGATTTGATGGTGTAGCACCAGAACCACGGGAAGGAGTAAGAAGTGGACATATCCCAGGGACAAAATGTGTTCCATTCCTTGAGATGTTTGATGATGCACCAATGCTTCTCCCTGCAGATGAGATCCGTAAAAAGTTTGAGCAAGCAGGGATATCCCTTGATCG CCCCATTGTAGTCACTTGTGGATCTGGTGTAACTGCCTGCATACTTGCTTTGGGACTCTATAGAATTGGGAAGCAAGATATTCCAGTTTATGATGGATCTTGGACAGAATGGGAAGCTCTACCGGATCATGATTATCCAAAAGTTACCTCCAATGGTTCTTAAAATCATCAGCTCCGAAATGATGGATTCATCTGCTGCATTTTTCACCATTCAGTTTAGATTGTCAGCTGGACTGTGTTCTCTTTGACATGCTTAGCGTTTGAATCAAAAGGAAGCGGAAATGTGCACTCTTGGCAATTTTGATGAGGCCATATTCAATATTAAACTTAGATCGATGATGTACTGAATGTTATCGTTAAACAATAATAAGCATACCAATTG ] [+] EMBL CF315512 [ TCCTGCTGCTCCGCCCTTCT AAGATCACC AGCAGCCGCAGTAGCTCGGCGAGCCGGCAGCCGACGGGTCCAATGGCGCAGGAATGATTCGGTTGTTTCTGCTCAGTGGCTGCATGAGCACTTAGGGCAGCCTGATGTTAAGGTGCTGGATGCTTCCTGGTACATGCCTGTAGAGAAGAGGGATCCATGGCAAGAATACCAGGTGGCCCATATCCCTGGTGCGCTGTTCTTCGACATAGATGGCATAGTTGACCTGACAACTGATTTGCCACACATGCTGCCATCACAAGAGGCTTTTGCAGCCGCAGTTTCTGCGCTCGATATAAAAAACCATGATAAAGTTATTGTTTATGATGGAAAGGGATTTTTCAGTGCACCTCGTGTATGGTNGGATGTTCAGAGTTTATGGACACAATAAAATTTGGGTGTTA ATNGGGAGGTTTACCTCAGTGGCGAACTTCTGGATTTGTTCTTGAGAGTAGCACCCCTGGTGATGCAGTTCAGAAAACTAAAGCTGCTAACAGTGTTGTTGAAAGGATTTATAATGGTCAACTGGCAAGTG ] [-] EMBL CF315513 [ ACAAAATGTGTTCCATTCCTTGAGATGTTTGATGATGCACCAATGCTTCTCCCTGCAGATGAGATCCGTAAAAAGTTTGAGCAAGCAGGGATATCCCTTGATCGCCCCCATTGTAGTCACTTGTGGATCTGGTGTAACTGCCTGCATACTTGCTTTGGGACTCTATAGAATTGGGAAGCAAGATATTCCAGTTTATGATGGATCTTGGACAGAATGGGAAGCTCTACCGGATCATGATTATCCAAAAGTTACCTCCAATGGTTCTTAAAATCATCAGCTCCGAAATGATGGATTCATCTGCTGCATTTTTCACCATTCAGTTTAGATTGTCAGCTGGACTGTGTTCTCTTTGACATGCTTAGCGTTTGAATCAAAAGGAAGCGGAAATGTGCACTCTTGGCAATTTTGATGAGGCCATATTCAATATTAAACTTAGATCGATGATGTACTGAATGTTATCGTTAAACAATAATAAGCATACCAATTGATTTTATATCAGAATGACAAACTGTGTTGTCACTACATTATTTTTTTTTTATTAGTTATGTGCTCTGTAACAGTGCAATAAAATGAATTTGTTTACCACAAAAAA] consensusID : consensus_6497#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 686 fasta sequence [CTTGGGAGGGTAGATGGCGATCGATAAAGCCTTGAGTAAGGTAGGGGCCCGCACAAGGCGGAAGGAGTAAGAAGGTGGCCATATCCCAGGGACGAAAATGTGTTCACGATTCCCTGAGAGGATTTGTAATGGAACCCGATGCTTTTCCTTGCAATTAGGATCCGTAAAAAGTTTGAGCAAGCAGGGATATCCCTTGATCGCCCCAGTGTAGTCACTTGTGGATCTGGTGTAACTGCCTGCATACTTGCTTTGGGACTCTATAGAATTGGGAAGCAAGATATTCCAGTTTATGATGGATCTTGGACAGAATGGGAAGCTCTACCGGATCATGATTATCCAAAAGTTACCTCCAATGGTTCTTAAAATCATCAGCTCCGAAATGATGGATTCATTTGGTGCATTTTTCACCATTCAGTTTAGATTGTCAGCTGGACTGTGTTCTCTTTGACATGCTTAGCGTTTGAATCAAAAGGAAGCGGAAATGTGCACTCTTGGCAATTTTGATGAGGCCATATTCAATATTAAACTTAGATCGATGATGTACTGAATGTTATCGTTAAACAATAATAAGCATACCAATTGATTTTATATCAGAATGACAAACTGTGTTGTCACTACATTATTTTTTTTATTAGTTATGTGCTCTGTAACAGTGCAATAAAATGAATTTGTTTAAAAAAAAAAAA] [-] EMBL CA763251 [CTTGGGAGGGTAGATGGCGATCGATAAAGCCTTGAGTAAGGTAGGGGCCCGCACAAGGCGGAAGGAGTAAGAAGGTGGCCATATCCCAGGGACGAAAATGTGTTCACGATTCCCTGAGAGGATTTGTAATGGAACCCGATGCTTTTCCTTGCAATTAGGATCCGTAAAAAGTTTGAGCAAGCAGGGATATCCCTTGATCGCCCCAGTGTAGTCACTTGTGGATCTGGTGTAACTGCCTGCATACTTGCTTTGGGACTCTATAGAATTGGGAAGCAAGATATTCCAGTTTATGATGGATCTTGGACAGAATGGGAAGCTCTACCGGATCATGATTATCCAAAAGTTACCTCCAATGGTTCTTAAAATCATCAGCTCCGAAATGATGGATTCATTTGGTGCATTTTTCACCATTCAGTTTAGATTGTCAGCTGGACTGTGTTCTCTTTGACATGCTTAGCGTTTGAATCAAAAGGAAGCGGAAATGTGCACTCTTGGCAATTTTGATGAGGCCATATTCAATATTAAACTTAGATCGATGATGTACTGAATGTTATCGTTAAACAATAATAAGCATACCAATTGATTTTATATCAGAATGACAAACTGTGTTGTCACTACATTATTTTTTTTATTAGTTATGTGCTCTGTAACAGTGCAATAAAATGAATTTGTTTAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6497#0 TCGGCTCATCCTGCTGCTCCGCCCTTCTCAAGATCACCAAGCAGCCGCAGTAGCTCGGCG 60 consensus_6497#1 ------------------------------------------------------------ consensus_6497#0 AGCCGGCAGCCGACGGGTCCAATGGCGCAGGATGATTCGGTTGTTTCTGCTCAGTGGCTG 120 consensus_6497#1 ------------------------------------------------------------ consensus_6497#0 CATGAGCACTTAGGGCAGCCTGATGTTAAGGTGCTGGATGCTTCCTGGTACATGCCTGTA 180 consensus_6497#1 ------------------------------------------------------------ consensus_6497#0 GAGAAGAGGGATCCATGGCAAGAATACCAGGTGGCCCATATCCCTGGTGCGCTGTTCTTC 240 consensus_6497#1 ------------------------------------------------------------ consensus_6497#0 GACATAGATGGCATAGTTGACCTGACAACTGATTTGCCACACATGCTGCCATCACAAGAG 300 consensus_6497#1 ------------------------------------------------------------ consensus_6497#0 GCTTTTGCAGCCGCAGTTTCTGCGCTCGATATAAAAAACCATGATAAAGTTATTGTTTAT 360 consensus_6497#1 ------------------------------------------------------------ consensus_6497#0 GATGGAAAGGGATTTTTCAGTGCACCTCGTGTATGGTGGATGTTCAGAGTTTATGGACAC 420 consensus_6497#1 ------------------------------------------------------------ consensus_6497#0 AATAAAATTTGGGTGTTAGATGGAGGTTTACCTCAGTGGCGAACTTCTGGATTTGTTCTT 480 consensus_6497#1 ------------------------------------------------------------ consensus_6497#0 GAGAGTAGCACCCCTGGTGATGCAGTTCAGAAAACTAAAGCTGCTAACAGTGTTGTTGAA 540 consensus_6497#1 ------------------------------------------------------------ consensus_6497#0 AGGATTTATAATGGTCAACTGGCAAGTGATGTAACATTTCAGACTGAATTTCAGCCTCAT 600 consensus_6497#1 ------------------------------------------------------------ consensus_6497#0 ATATTCTGGACACTAGAAAAGGTTAAACATAACATGGATGCACAGTCTCACCAAGTCGTT 660 consensus_6497#1 ---------------------------------------------CTTGGGAGGGTAGAT 15 * ** * * consensus_6497#0 GATGCCCGATCAAAGGGCAGATTTGATGGTGTAGCACCAGAACCACGGGAAGGAGTAAGA 720 consensus_6497#1 GGCGATCGATAAAGCCTTGAGTAAGGTAGGGGCCCGCACAAGGC---GGAAGGAGTAAGA 72 * * **** ** * * * * * * * * * ************* consensus_6497#0 AG-TGGACATATCCCAGGGAC-AAAATGTGTTCC--ATTCCTTGAGATGTTTGATGATGC 776 consensus_6497#1 AGGTGGCCATATCCCAGGGACGAAAATGTGTTCACGATTCCCTGAGAGGATTTGTAATGG 132 ** *** ************** *********** ***** ***** * ** * *** consensus_6497#0 A--CCAATGCTTCTCCCTGCAGATGAGATCCGTAAAAAGTTTGAGCAAGCAGGGATATCC 834 consensus_6497#1 AACCCGATGCTTTTCCTTGCAATTAGGATCCGTAAAAAGTTTGAGCAAGCAGGGATATCC 192 * ** ****** *** **** * ********************************** consensus_6497#0 CTTGATCGCCCCATTGTAGTCACTTGTGGATCTGGTGTAACTGCCTGCATACTTGCTTTG 894 consensus_6497#1 CTTGATCGCCCCAGTGTAGTCACTTGTGGATCTGGTGTAACTGCCTGCATACTTGCTTTG 252 ************* ********************************************** consensus_6497#0 GGACTCTATAGAATTGGGAAGCAAGATATTCCAGTTTATGATGGATCTTGGACAGAATGG 954 consensus_6497#1 GGACTCTATAGAATTGGGAAGCAAGATATTCCAGTTTATGATGGATCTTGGACAGAATGG 312 ************************************************************ consensus_6497#0 GAAGCTCTACCGGATCATGATTATCCAAAAGTTACCTCCAATGGTTCTTAAAATCATCAG 1014 consensus_6497#1 GAAGCTCTACCGGATCATGATTATCCAAAAGTTACCTCCAATGGTTCTTAAAATCATCAG 372 ************************************************************ consensus_6497#0 CTCCGAAATGATGGATTCATCTGCTGCATTTTTCACCATTCAGTTTAGATTGTCAGCTGG 1074 consensus_6497#1 CTCCGAAATGATGGATTCATTTGGTGCATTTTTCACCATTCAGTTTAGATTGTCAGCTGG 432 ******************** ** ************************************ consensus_6497#0 ACTGTGTTCTCTTTGACATGCTTAGCGTTTGAATCAAAAGGAAGCGGAAATGTGCACTCT 1134 consensus_6497#1 ACTGTGTTCTCTTTGACATGCTTAGCGTTTGAATCAAAAGGAAGCGGAAATGTGCACTCT 492 ************************************************************ consensus_6497#0 TGGCAATTTTGATGAGGCCATATTCAATATTAAACTTAGATCGATGATGTACTGAATGTT 1194 consensus_6497#1 TGGCAATTTTGATGAGGCCATATTCAATATTAAACTTAGATCGATGATGTACTGAATGTT 552 ************************************************************ consensus_6497#0 ATCGTTAAACAATAATAAGCATACCAATTGATTTTATATCAGAATGACAAACTGTGTTGT 1254 consensus_6497#1 ATCGTTAAACAATAATAAGCATACCAATTGATTTTATATCAGAATGACAAACTGTGTTGT 612 ************************************************************ consensus_6497#0 CACTACATTATTTTTTTTTTATTAGTTATGTGCTCTGTAACAGTGCAATAAAATGAATTT 1314 consensus_6497#1 CACTACATTATTTTTTT--TATTAGTTATGTGCTCTGTAACAGTGCAATAAAATGAATTT 670 ***************** ***************************************** consensus_6497#0 GTTTACCACAAAAAA- 1329 consensus_6497#1 GTTTAAAAAAAAAAAA 686 ***** * ****** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||