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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6511#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1388 fasta sequence
[ATTCCTCCCCCTTCTCCTCGCCAAAAGGCCAAAAAACCCAACTCCCCCGATCTCCCCACCACCACCACCCAGATCTCGAAACCCTCGCCGTCGCCGCCCTCCTCCTCCTCCACCGTCGCGGCGGCCATGGCGAAGGAGTTCCCCGTGCCGCCGGTGGTCTTCACTCCCTCCACCCCTACCCACCGCCGCCATCCTCCCCCAGGGACCGGCCCCTCCCCGCCGCCGGCCTTCGCGCCTCCCCGCCCCTCCACCTCATCCGGCGCGAACCCTCTCCCCTTCATGTCCTTCGACGTCGGCAACGCGGCCACCTCCTCCTCGCCGCCGCTGTTCGCCGGGCCGATCGGCGTCGGCGGCTCCGGGGCCTCCTTCGAGGACGAGCCGCCGCTCCTCGAGGAGCTCGGCATCAACACGCGCCAGATCTGGCGGAAGACGCTCTCCATCCTCCACCCGCTCCGCTCCGCCGATCCCTCCCTCCACGCCGACGCCGACCTCTCGGGCCCGTTCCTCTTCCTACTCTCCTTCGGCCTCTTCTAGCTGCTCGCCGGCAAGTTCCACTTCGGGATCGTCCTCGGGTGGGTCACCGTCGCTTCCCTCTTCCTCTACTTCGTCTTCTCCATGCTCTCGGGCGGACGCCGCGGCGATCTCGACCTCTACAGATGCGTCAGTCTCGTCGGATACTGCATGCTCCCCATGGTCATCTTCTCCGCGATCTCCCTCTTCCTGCCTCGGGGTGGCGGCCTCATATTTGGGGTGGGCATGGGGTTCGTGCTGTGGTCCACCAGGGTGTGCACCAGGTTGCTCGCTGAGCTTGCATCAAGCGGTGACGAGCATAGGGGGCTCATCGCCTACGCGTGCTGGCTTGTCTACATGCTCTTCTCGCTGCTCGTCGTCTTCTGATGCCCTTTTTATGATCATGTTCAGGATTCTTTTGCCGTATGAAGTGGAGAGCTGCCAATCTACCAGTCGCCGGAGTGGTCTTGGTGTGTTTTGCTGGACAACAGATTATCACGCCAGTTGGGAGATTTTGTGTAATGATCTGTTCCTTTTTCACCCCGTAGTTCCTGTGGCATGGTAGTTTTAGAGGGATCGTACAGATCTTGGTAAAGAAAAGAAAGGCAAGATCAAGACACCGAAAATATGAAGTAATTAGGTTTTGCTGAATATTGATGGAATCTGGCGACTTTCAAACTAATTCGTGGTCTGTACGAACTTGTTCATTGTATTTACTTACCACGATTAGTTGTTTTAGGGTCATTTCTGCCTACTTTGTTTTTACCCCCATCTTTTCTTCGTTTCAGTTTGATAAGAGAGGATTGTTTTATCATTAGGAGATGTGTTAGTTGCTGACTCAAATTGGATGAGTCACTTAAGTAGTTATGTTTCTCTTG]
[+] EMBL AK064364 [ATTCCTCCCCCTTCTCCTCGCCAAAAGGCCAAAAAACCCAACTCCCCCGATCTCCCCACCACCACCACCCAGATCTCGAAACCCTCGCCGTCGCCGCCCTCCTCCTCCTCCACCGTCGCGGCGGCCATGGCGAAGGAGTTCCCCGTGCCGCCGGTGGTCTTCACTCCCTCCACCCCTACCCACCGCCGCCATCCTCCCCCAGGGACCGGCCCCTCCCCGCCGCCGGCCTTCGCGCCTCCCCGCCCCTCCACCTCATCCGGCGCGAACCCTCTCCCCTTCATGTCCTTCGACGTCGGCAACGCGGCCACCTCCTCCTCGCCGCCGCTGTTCGCCGGGCCGATCGGCGTCGGCGGCTCCGGGGCCTCCTTCGAGGACGAGCCGCCGCTCCTCGAGGAGCTCGGCATCAACACGCGCCAGATCTGGCGGAAGACGCTCTCCATCCTCCACCCGCTCCGCTCCGCCGATCCCTCCCTCCACGCCGACGCCGACCTCTCGGGCCCGTTCCTCTTCCTACTCTCCTTCGGCCTCTTCTAGCTGCTCGCCGGCAAGTTCCACTTCGGGATCGTCCTCGGGTGGGTCACCGTCGCTTCCCTCTTCCTCTACTTCGTCTTCTCCATGCTCTCGGGCGGACGCCGCGGCGATCTCGACCTCTACAGATGCGTCAGTCTCGTCGGATACTGCATGCTCCCCATGGTCATCTTCTCCGCGATCTCCCTCTTCCTGCCTCGGGGTGGCGGCCTCATATTTGGGGTGGGCATGGGGTTCGTGCTGTGGTCCACCAGGGTGTGCACCAGGTTGCTCGCTGAGCTTGCATCAAGCGGTGACGAGCATAGGGGGCTCATCGCCTACGCGTGCTGGCTTGTCTACATGCTCTTCTCGCTGCTCGTCGTCTTCTGATGCCCTTTTTATGATCATGTTCAGGATTCTTTTGCCGTATGAAGTGGAGAGCTGCCAATCTACCAGTCGCCGGAGTGGTCTTGGTGTGTTTTGCTGGACAACAGATTATCACGCCAGTTGGGAGATTTTGTGTAATGATCTGTTCCTTTTTCACCCCGTAGTTCCTGTGGCATGGTAGTTTTAGAGGGATCGTACAGATCTTGGTAAAGAAAAGAAAGGCAAGATCAAGACACCGAAAATATGAAGTAATTAGGTTTTGCTGAATATTGATGGAATCTGGCGACTTTCAAACTAATTCGTGGTCTGTACGAACTTGTTCATTGTATTTACTTACCACGATTAGTTGTTTTAGGGTCATCTCTGCCTACTTTGTTTTTACCCCCATCTTTTCTTCGTTTCAGTTTGATAAGAGAGGATTGTTTTATCATTAGGAGATGTGTTAGTTGCTGACTCAAATTGGATGAGTCACTTAAGTAGTTATGTTTCTCTTG]
[+] EMBL AK073108 [ ATCAACACGCGCCAGATCTGGCGGAAGACGCTCTCCATCCTCCACCCGCTCCGCTCCGCCGATCCCTCCCTCCACGCCGACGCCGACCTCTCGGGCCCGTTCCTCTTCCTCCTCTCCTTCGGCCTCTTCCAGCTGCTCGCCGGCAAGTTCCACTTCGGGATCGTCCTCGGGTGGGTCACCGTCGCTTCCCTCTTCCTCTACTTCGTCTTCTCCATGCTCTCGGGCGGACGCCGCGGCGATCTCGACCTCTACAGATGCGTCAGTCTCGTCGGATACTGCATGCTCCCCATGGTCATCTTCTCCGCGATCTCCCTCTTCCTGCCTCGGGGTGGCGGCCTCATATTTGGGGTGGGCATGGGGTTCGTGCTGTGGTCCACCAGGGTGTGCACCAGGTTGCTCGCTGAGCTTGCATCAAGCGGTGACGAGCATAGGGGGCTCATCGCCTACGCGTGCTGGCTTGTCTACATGCTCTTCTCGCTGCTCGTCGTCTTCTGATGCCCTTTTTATGATCATGTTCAGGATTCTTTTGCCGTATGAAGTGGAGAGCTGCCAATCTACCAGTCGCTGGAGTGGTCTTGGTGTGTTTTGCTGGACAACAGATTATCACGCCAGTTGGGAGATTTTGTGTAATGATCTGTTCCTTTTTCACCCCGTAGTTCCTGTGGCATGGTAGTTTTAGAGGGATCGTACAGATCTTGGTAAAGAAAAGAAAGGCAAGATCAAGACACCGAAAATATGAAGTAATTAGGTTTTGCTGAATATTGATGGAATCTGGCGACTTTCAAACTAATTCGTGGTCTGTACGAACTTGTTCATTGTATTTACTTACCACGATTAGTTGTTTTAGGGTCATTTCTGCCTACTTTGTTTTTACCCCCATCTTTTCTTCGTTTCAGTTTGATAAGAGAGGA ]
[-] EMBL CB647919 [ GTAGTTCCTGTGGCATGGTAGTTTTAGGGGGATCGTGCAGATTTTGGTAAAGAAAAGAATGGCAAGATCAGGACACGGGAAATATAAAGTAATTAGGTTTTGCTGAATATTGATGGAATCTGGCGACTTTCAAATTAATTCGTGGTCAGTAGGAACTTGTTCATTGTATTTATTTACCCCGATTAGTTGTTTTAGGGTCATTTTTGCCTAGTTTGTTTTTGCCCCCATCTTTTCTTCGTTTCAGTTTGATAAGAGAGGATTGTTTTATCATTAGGAGATGTGTTAGTTGGGGACTCAAATTGGATGAG ]
consensusID : consensus_6511#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 457 fasta sequence
[GGCCCAGACAAGGGGGCTCATTGCCTACGCGTGCTGGCTTGTTTACATGCTTTTCTCGCTGCTTGTTGTTTTTTGATGCCCCTTTTATGATCATGTTCAGGATTCTTTTGCCGTATGAAGTGGAAAGCTGCCAATTTTCCAGCCGCTGGAGTGGTCTTGGTGTGTTTTGCTGGACAACAGATTATCACGCCAGTTGGGAGATTTTGGGTAAAGATCTGTTCCTTTTTCACCCCGTAGTTCCTGTGGCATGGTAGTTTTAAAGGGATCGTACAGATTTTGGTAAAAAAAAAAAAGGCAAGATCAAGACCCCGAAAATATGAAGTAATTAGGTTTTGCTGAATATTGATGGAATCTGGCGACTTTCAAACTAATTCGTGGTCTGTACGAACTTGTTCATTGTATTTACTTACCCCGATTAGTTGTTTTAGGGTCAAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CA763288 [GGCCCAGACAAGGGGGCTCATTGCCTACGCGTGCTGGCTTGTTTACATGCTTTTCTCGCTGCTTGTTGTTTTTTGATGCCCCTTTTATGATCATGTTCAGGATTCTTTTGCCGTATGAAGTGGAAAGCTGCCAATTTTCCAGCCGCTGGAGTGGTCTTGGTGTGTTTTGCTGGACAACAGATTATCACGCCAGTTGGGAGATTTTGGGTAAAGATCTGTTCCTTTTTCACCCCGTAGTTCCTGTGGCATGGTAGTTTTAAAGGGATCGTACAGATTTTGGTAAAAAAAAAAAAGGCAAGATCAAGACCCCGAAAATATGAAGTAATTAGGTTTTGCTGAATATTGATGGAATCTGGCGACTTTCAAACTAATTCGTGGTCTGTACGAACTTGTTCATTGTATTTACTTACCCCGATTAGTTGTTTTAGGGTCAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6511#0 ATTCCTCCCCCTTCTCCTCGCCAAAAGGCCAAAAAACCCAACTCCCCCGATCTCCCCACC 60
consensus_6511#1 ------------------------------------------------------------
consensus_6511#0 ACCACCACCCAGATCTCGAAACCCTCGCCGTCGCCGCCCTCCTCCTCCTCCACCGTCGCG 120
consensus_6511#1 ------------------------------------------------------------
consensus_6511#0 GCGGCCATGGCGAAGGAGTTCCCCGTGCCGCCGGTGGTCTTCACTCCCTCCACCCCTACC 180
consensus_6511#1 ------------------------------------------------------------
consensus_6511#0 CACCGCCGCCATCCTCCCCCAGGGACCGGCCCCTCCCCGCCGCCGGCCTTCGCGCCTCCC 240
consensus_6511#1 ------------------------------------------------------------
consensus_6511#0 CGCCCCTCCACCTCATCCGGCGCGAACCCTCTCCCCTTCATGTCCTTCGACGTCGGCAAC 300
consensus_6511#1 ------------------------------------------------------------
consensus_6511#0 GCGGCCACCTCCTCCTCGCCGCCGCTGTTCGCCGGGCCGATCGGCGTCGGCGGCTCCGGG 360
consensus_6511#1 ------------------------------------------------------------
consensus_6511#0 GCCTCCTTCGAGGACGAGCCGCCGCTCCTCGAGGAGCTCGGCATCAACACGCGCCAGATC 420
consensus_6511#1 ------------------------------------------------------------
consensus_6511#0 TGGCGGAAGACGCTCTCCATCCTCCACCCGCTCCGCTCCGCCGATCCCTCCCTCCACGCC 480
consensus_6511#1 ------------------------------------------------------------
consensus_6511#0 GACGCCGACCTCTCGGGCCCGTTCCTCTTCCTACTCTCCTTCGGCCTCTTCTAGCTGCTC 540
consensus_6511#1 ------------------------------------------------------------
consensus_6511#0 GCCGGCAAGTTCCACTTCGGGATCGTCCTCGGGTGGGTCACCGTCGCTTCCCTCTTCCTC 600
consensus_6511#1 ------------------------------------------------------------
consensus_6511#0 TACTTCGTCTTCTCCATGCTCTCGGGCGGACGCCGCGGCGATCTCGACCTCTACAGATGC 660
consensus_6511#1 ------------------------------------------------------------
consensus_6511#0 GTCAGTCTCGTCGGATACTGCATGCTCCCCATGGTCATCTTCTCCGCGATCTCCCTCTTC 720
consensus_6511#1 ------------------------------------------------------------
consensus_6511#0 CTGCCTCGGGGTGGCGGCCTCATATTTGGGGTGGGCATGGGGTTCGTGCTGTGGTCCACC 780
consensus_6511#1 ------------------------------------------------------------
consensus_6511#0 AGGGTGTGCACCAGGTTGCTCGCTGAGCTTGCATCAAGCGGTGACGAGCATAGGGGGCTC 840
consensus_6511#1 -----------------------------------------GGCCCAGACAAGGGGGCTC 19
* * ** *********
consensus_6511#0 ATCGCCTACGCGTGCTGGCTTGTCTACATGCTCTTCTCGCTGCTCGTCGTCTTCTGATGC 900
consensus_6511#1 ATTGCCTACGCGTGCTGGCTTGTTTACATGCTTTTCTCGCTGCTTGTTGTTTTTTGATGC 79
** ******************** ******** *********** ** ** ** ******
consensus_6511#0 CCTTTTTATGATCATGTTCAGGATTCTTTTGCCGTATGAAGTGGAGAGCTGCCAATCTAC 960
consensus_6511#1 CCCTTTTATGATCATGTTCAGGATTCTTTTGCCGTATGAAGTGGAAAGCTGCCAATTTTC 139
** ****************************************** ********** * *
consensus_6511#0 CAGTCGCCGGAGTGGTCTTGGTGTGTTTTGCTGGACAACAGATTATCACGCCAGTTGGGA 1020
consensus_6511#1 CAGCCGCTGGAGTGGTCTTGGTGTGTTTTGCTGGACAACAGATTATCACGCCAGTTGGGA 199
*** *** ****************************************************
consensus_6511#0 GATTTTGTGTAATGATCTGTTCCTTTTTCACCCCGTAGTTCCTGTGGCATGGTAGTTTTA 1080
consensus_6511#1 GATTTTGGGTAAAGATCTGTTCCTTTTTCACCCCGTAGTTCCTGTGGCATGGTAGTTTTA 259
******* **** ***********************************************
consensus_6511#0 GAGGGATCGTACAGATCTTGGTAAAGAAAAGAAAGGCAAGATCAAGACACCGAAAATATG 1140
consensus_6511#1 AAGGGATCGTACAGATTTTGGTAAAAAAAAAAAAGGCAAGATCAAGACCCCGAAAATATG 319
*************** ******** **** ***************** ***********
consensus_6511#0 AAGTAATTAGGTTTTGCTGAATATTGATGGAATCTGGCGACTTTCAAACTAATTCGTGGT 1200
consensus_6511#1 AAGTAATTAGGTTTTGCTGAATATTGATGGAATCTGGCGACTTTCAAACTAATTCGTGGT 379
************************************************************
consensus_6511#0 CTGTACGAACTTGTTCATTGTATTTACTTACCACGATTAGTTGTTTTAGGGTCATTTCTG 1260
consensus_6511#1 CTGTACGAACTTGTTCATTGTATTTACTTACCCCGATTAGTTGTTTTAGGGTCAAAAAAA 439
******************************** *********************
consensus_6511#0 CCTACTTTGTTTTTACCCCCATCTTTTCTTCGTTTCAGTTTGATAAGAGAGGATTGTTTT 1320
consensus_6511#1 AAAAAAAAAAAAAAAAAA------------------------------------------ 457
* *
consensus_6511#0 ATCATTAGGAGATGTGTTAGTTGCTGACTCAAATTGGATGAGTCACTTAAGTAGTTATGT 1380
consensus_6511#1 ------------------------------------------------------------
consensus_6511#0 TTCTCTTG 1388
consensus_6511#1 --------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||