These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6522#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 939 fasta sequence [CCCCCACCTCCCACCTCCCCGGAGCCGCCGCGCCGCCGCCGGAGCGAGCCAGTGAGCGATGGCCGGGACGGGCGGAAGAACCGGCGAGCCGGAGGCCACCGGAGTGGAGGCAGCCTCCGCCCCAGAGCGCTCCGAATCCAGCCGATGCATGCCGTTCGAGGACTGCGTCGCCGGCATCAAGTCGTCTCTCAAAAATCCGACGGTGCGGTTCCTGATGGAGCGGATGGATAAGGCCGGCTGCCCGATGCCGCCGGGGATGATCACGGCGAGGAACTGCGGGACTGCCGATAAGAATGGTTCCTACGGTTCCCGGATAGGGATAACGGTTTGCTGTGAAGAAATACGATATAAAGATGAGATAACTCAGCTATTAATTCACGAATTAATACATGCCTATGATGATTGTGTTGTCAAGGACATGGATTGGAAGAACTGTGCTCACCATGCTTGCTCCGAGATTCGAGCTAACCACCTTAGTGGTGACTGCCATTATAAACGTGAATTGTTGCGTGGCTTCATGAAGATGAGGGGGCATGAGCAAGAATGTGTTAAACGGCGGGCTCTGATGTCTCTCAGGAACAA-CCCACACTGTTCAGGGACAGCTGCAAAAGATGCAGTTGAGGCTGTATGGAGTATATGCTACAATGATACACGCCCATTTGATAGGGCTCCATGATATTATTGGCAACATTACAAGAAGCCATGAATTAAGATTGTGCACCCCTGCTGGGGATAATTTTGTTCCCCTTCAGTCAATTGTAGTTAAGCAAAGAACTTATTTTTTTGCTGGAGCAAAGCTGTATTAGGCTATAAGTCATGACTCGAGTTCATGAACATTGTAGTGAATTAGCTCATATGATGATTCTATTATCTTTTGCATTACATAGTTGGACAAAGTATAATAAGCTCCTAGAAAAGACTTGTGCCATGGGTTACTTC] [+] EMBL AK111072 [CCCCCACCTCCCACCTCCCCGGAGCCGCCGCGCCGCCGCCGGAGCGAGCCAGTGAGCGATGGCCGGGACGGGCGGAAGAACCGGCGAGCCGGAGGCCACCGGAGTGGAGGCAGCCTCCGCCCCAGAGCGCTCCGAATCCAGCCGATGCATGCCGTTCGAGGACTGCGTCGCCGGCATCAAGTCGTCTCTCAAAAATCCGACGGTGCGGTTCCTGATGGAGCGGATGGATAAGGCCGGCTGCCCGATGCCGCCGGGGATGATCACGGCGAGGAACTGCGGGACTGCCGATAAGAATGGTTCCTACGGTTCCCGGATAGGGATAACGGTTTGCTGTGAAGAAATACGATATAAAGATGAGATAACTCAGCTATTAATTCACGAATTAATACATGCCTATGATGATTGTGTTGTCAAGGACATGGATTGGAAGAACTGTGCTCACCATGCTTGCTCCGAGATTCGAGCTAACCACCTTAGTGGTGACTGCCATTATAAACGTGAATTGTTGCGTGGCTTCATGAAGATGAGGGGGCATGAGCAAGAATGTGTTAAACGGCGGGCTCTGATGTCTCTCAGGAACAA CCCACACTGTTCAGGGACAGCTGCAAAAGATGCAGTTGAGGCTGTATGGAGTATATGCTACAATGATACACGCCCATTTGATAGGGCTCCATGATATTATTGGCAACATTACAAGAAGCCATGAATTAAGATTGTGCACCCCTGCTGGGGATAATTTTGTTCCCCTTCAGTCAATTGTAGTTAAGCAAAGAACTTATTTTTTTGCTGGAGCAAAGCTGTATTAGGCTATAAGTCATGACTCGAGTTCATGAACATTGTAGTGAATTAGCTCATATGATGATTCTATTATCTTTTGCATTACATAGTTGGACAAAGTATAATAAGCTCCTAGAAAAGACTTGTGCCATGGGTTACTTC] [-] EMBL CF334122 [ CGGTTTGCTGT AAGAAATACGATATAAAGATGAGATAACTCAGCTATT ATTCACGAATTAATACATGCCTATGATGATTGTGTTGTCAAGGACATGGATTGGAAGAACTGTGCTCACCATGCTTGCTCCGAGATTCGAGCTAACCACCTTAGTGGTGACTGCCATTATAAACGTGAATTGTTGCGTGGCTTCATGAAGATGAGGGGGCATGAGCAAGAATGTGTTAAACGGCGGGCTCTGATGTCTCTCAGGAACAACCCCACACTGTTCAGGGACAGCTGCAAAAGATGCAGTTGAGGCTGTATGGAGCATATGCTACAATGATACACGCCCATTTGATAGGGCTCCATGATATTATTGGCAACATTACAAGAAGCCATGAATTAAGATTGTGCACCCCTGCTGGGGATAATTTTGTTCCCCTTCAGTCAATTGTAGTTAAGCAAAGAACTTATTTTTTTGCTGGAGCAAAGCTGTATTAGGCTATAAGTCATGACTCGAGTTCATGAACATTGTAGTGAATTAGCTCATATGATGATTCTATTATCTTTTGCATTAaaaaa ] consensusID : consensus_6522#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 691 fasta sequence [TGTGTGCTGTGATCACATGCGGTCTCAAGATGAGATAAATCAGCTATTAATTCATGAATTAATACATGCCTATGATGACTGTGTTGTCAAGAACATGGATTGGAAGAACTGTGCTCACCATGCTTGCTCTGAGATTCGAGCTAATCACCTTAGTGGTGACTGCCATTATAAACGTGAATTGTTGCGTGGCTTCATGAAGATAAGGGGGCACGAGCAAGAATGTGTTAAAAGGCGGGCTTTCATGTCTGTCAAGAACAACCCGTACTGCTCAGGGACAGCTGCAAAAGATGCAGTTGAGTCTGTGTGGGATATATGCTACAATGATACACGCCCATTTGATAGGGTTCCATGAAGTATATTATTACAAAGAAGTCATGAACTAAGATTGTGCTTCCCTGCTGGGGATAATTTTGTTCCCTTTCATGCCTTGTTCGGTTAAAATCTCTCTCACAAGAGGATTGAGGGAGATTTGGAAGTGATTTATTCCAAACCTATTGTTGTGTGGAATTATTCCTCCTTAATCCTCTCCAATCCCTTTCTTTAGGGATAAACCGAACAAGGCATTAGTGAATTGTAGTTAAGCAAACTGTGACAAGAAAAGCCAGAACTTCTTTCGCTAGAGCAAAGCAGTATTTAGGAGTCATGACTCGAGTTCATGAACATTTTAATGAATTAGCTCATCTGAGATTTT] [-] EMBL CB654561 [TGTGTGCTGTGATCACATGCGGTCTCAAGATGAGATAAATCAGCTATTAATTCATGAATTAATACATGCCTATGATGACTGTGTTGTCAAGAACATGGATTGGAAGAACTGTGCTCACCATGCTTGCTCTGAGATTCGAGCTAATCACCTTAGTGGTGACTGCCATTATAAACGTGAATTGTTGCGTGGCTTCATGAAGATAAGGGGGCACGAGCAAGAATGTGTTAAAAGGCGGGCTTTCATGTCTGTCAAGAACAACCCGTACTGCTCAGGGACAGCTGCAAAAGATGCAGTTGAGTCTGTGTGGGATATATGCTACAATGATACACGCCCATTTGATAGGGTTCCATGAAGTATATTATTACAAAGAAGTCATGAACTAAGATTGTGCTTCCCTGCTGGGGATAATTTTGTTCCCTTTCATGCCTTGTTCGGTTAAAATCTCTCTCACAAGAGGATTGAGGGAGATTTGGAAGTGATTTATTCCAAACCTATTGTTGTGTGGAATTATTCCTCCTTAATCCTCTCCAATCCCTTTCTTTAGGGATAAACCGAACAAGGCATTAGTGAATTGTAGTTAAGCAAACTGTGACAAGAAAAGCCAGAACTTCTTTCGCTAGAGCAAAGCAGTATTTAGGAGTCATGACTCGAGTTCATGAACATTTTAATGAATTAGCTCATCTGAGATTTT] consensusID : consensus_6522#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 268 fasta sequence [GGAGCCGCCGCGCCGCCGCCGGAGCGAGCCAGTGAGCGATGGCCGGAACGGGCGGAAGAACCGGCGAGCCGGAGGCCACCGGAGTGGAGGCAGCCTCCGCCCCAGAACGCTCCGAATCCAGCCGATGCATGCCGTTCGAGGACTGCGTCGCCGGCATCAAGTCGTCTCTCANAAGTACGAGCGCGCCGCCGTATATCCGACGGGTGCGGTTCCTGATGGAGCGGATGGATAAGGCCGGCTGCCCGATGCCGCCGGGGATGATCACGGC] [+] EMBL CF334123 [GGAGCCGCCGCGCCGCCGCCGGAGCGAGCCAGTGAGCGATGGCCGGAACGGGCGGAAGAACCGGCGAGCCGGAGGCCACCGGAGTGGAGGCAGCCTCCGCCCCAGAACGCTCCGAATCCAGCCGATGCATGCCGTTCGAGGACTGCGTCGCCGGCATCAAGTCGTCTCTCANAAGTACGAGCGCGCCGCCGTATATCCGACGGGTGCGGTTCCTGATGGAGCGGATGGATAAGGCCGGCTGCCCGATGCCGCCGGGGATGATCACGGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6522#0 CCCCCACCTCCCACCTCCCCGGAGCCGCCGCGCCGCCGCCGGAGCGAGCCAGTGAGCGAT 60 consensus_6522#2 --------------------GGAGCCGCCGCGCCGCCGCCGGAGCGAGCCAGTGAGCGAT 40 consensus_6522#1 -----TGTGTGCTGTGATCACATGCGGTCTCAAGATGAGATAAATCAGCTATTAATTCAT 55 ** * * * * *** * * * ** consensus_6522#0 GG-CCGGGACGGGCGGAAGA-ACCGGCGAGCCGGAGGCCACCGGAGTGGAGGCAGCCTCC 118 consensus_6522#2 GG-CCGGAACGGGCGGAAGA-ACCGGCGAGCCGGAGGCCACCGGAGTGGAGGCAGCCTCC 98 consensus_6522#1 GAATTAATACATGCCTATGATGACTGTGTTGTCAAGAACAT-GGATTGGAAGAACTGTGC 114 * ** ** * ** * * * ** ** *** **** * * * * consensus_6522#0 GCCCCA-GAGCGCTCCGA-ATCCAGCCGATGCATGCCGTTCGAGGACTGCGTCGCCGGCA 176 consensus_6522#2 GCCCCA-GAACGCTCCGA-ATCCAGCCGATGCATGCCGTTCGAGGACTGCGTCGCCGGCA 156 consensus_6522#1 TCACCATGCTTGCTCTGAGATTCGAGCTAATCACCTTAGTGGTGACTGCCATTATAAACG 174 * *** * **** ** ** * * * ** * * * * * * consensus_6522#0 TCAA-------GTCGTCTCTCAAAA--------------------ATCCGACGG--TGCG 207 consensus_6522#2 TCAA-------GTCGTCTCTCANAAGTACGAGCGCGCCGCCGTATATCCGACGGG-TGCG 208 consensus_6522#1 TGAATTGTTGCGTGGCTTCATGAAGATAAGGGGGCACGAGCAAGAATGTGTTAAAAGGCG 234 * ** ** * ** * ** * *** consensus_6522#0 GTTCCTGATGGAGCGGATGGATAAGGCCGGCTGCCCGATGCCGCCGGGGATGATCACGGC 267 consensus_6522#2 GTTCCTGATGGAGCGGATGGATAAGGCCGGCTGCCCGATGCCGCCGGGGATGATCACGGC 268 consensus_6522#1 GGCTTTCATGTCTGTCAAGAACAACCCGTACTGCTCAGGGACAGCTGCAAAAGATGCAGT 294 * * *** * * * ** * **** * * * * * * * * consensus_6522#0 GAGGAACTGCGGGACTGCCGATAAGAATGGTTCCTACGGTTCCCGGATAGGGATAACGGT 327 consensus_6522#2 ------------------------------------------------------------ consensus_6522#1 TGAGTCTGTGTGGGATATATGCTACAATGATACACGCCCATTTGATAGGGTTCCATGAAG 354 consensus_6522#0 TTGCTGTGAAGAAATACGATATAAAGATGAGATAACTCAGCTATTAATTCACGAATTAAT 387 consensus_6522#2 ------------------------------------------------------------ consensus_6522#1 TATATTATTACAAAGAAGTCATGAACTAAGATTGTGCTTCCCTGCTGGGGATAATTTTGT 414 consensus_6522#0 ACATGCCTATGATGATTGTGTTGTCAAGGACATGGATTGGAAGAACTGTGCTCACCATGC 447 consensus_6522#2 ------------------------------------------------------------ consensus_6522#1 TCCCTTTCATGCCTTGTTCGGTTAAAATCTCTCTCACAAGAGGATTGAGGGAGATTTGGA 474 consensus_6522#0 TTGCTCCGAGATTCGAGCTAACCACCTTAGTGGTGACTGCCATTATAAACGTGAATTGTT 507 consensus_6522#2 ------------------------------------------------------------ consensus_6522#1 AGTGATTTATTCCAAACCTATTGTTGTGTGGAATTATTCCTCCTTAATCCTCTCCAATCC 534 consensus_6522#0 GCGTGGCTTCATGAAGATGAGGGGGCATGAGCAAGAATGTGTTAAACGGCGGGCTCTGAT 567 consensus_6522#2 ------------------------------------------------------------ consensus_6522#1 CTTTCTTTAGGGATAAACCGAACAAGGCATTAGTGAATTGTAGTTAAGCAAACTGTGACA 594 consensus_6522#0 GTCTCTCAGGAACAACCCACACTGTTCAGGGACAGCTGCAAAAGATGCAGTTGAGGCTGT 627 consensus_6522#2 ------------------------------------------------------------ consensus_6522#1 AGAAAAGCCAGAACTTCTTTCGCTAGAGCAAAGCAGTATTTAGGAGTCATGACTCGAGTT 654 consensus_6522#0 ATGGAGTATATGCTACAATGATACACGCCCATTTGATAGGGCTCCATGATATTATTGGCA 687 consensus_6522#2 ------------------------------------------------------------ consensus_6522#1 CATGAACATTTTAATGAATTAGCTCATCTGAGATTTT----------------------- 691 consensus_6522#0 ACATTACAAGAAGCCATGAATTAAGATTGTGCACCCCTGCTGGGGATAATTTTGTTCCCC 747 consensus_6522#2 ------------------------------------------------------------ consensus_6522#1 ------------------------------------------------------------ consensus_6522#0 TTCAGTCAATTGTAGTTAAGCAAAGAACTTATTTTTTTGCTGGAGCAAAGCTGTATTAGG 807 consensus_6522#2 ------------------------------------------------------------ consensus_6522#1 ------------------------------------------------------------ consensus_6522#0 CTATAAGTCATGACTCGAGTTCATGAACATTGTAGTGAATTAGCTCATATGATGATTCTA 867 consensus_6522#2 ------------------------------------------------------------ consensus_6522#1 ------------------------------------------------------------ consensus_6522#0 TTATCTTTTGCATTACATAGTTGGACAAAGTATAATAAGCTCCTAGAAAAGACTTGTGCC 927 consensus_6522#2 ------------------------------------------------------------ consensus_6522#1 ------------------------------------------------------------ consensus_6522#0 ATGGGTTACTTC 939 consensus_6522#2 ------------ consensus_6522#1 ------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||