These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6523#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1846 fasta sequence [TCTCCCGACGCCTCCGACCTCGCCGCGGAAAGCTTCTCCATCGATCGATCTCTCCTCTCTCTCCCGCGGGGGCTCTCCGGCGCACGGTGCCCTCTCGTGCCTCGGAGACCCCGATCCGCCGCCGCCGCCGCCGCCGCCGTGCCTGAGTAGTACAGTCTTGTTGTCGAGGTGAGGTGAGTGGTGGGAGGAGAAATGGACACCGGGATGAGGGTGGCGCTGCACCGGCAGGTGTCGTCGGGGTCGCTGAAGGAGAGCGGGGAGCTCCGGCGGCAGTCGTCGCTGGAGTCTCCCCGGACGGGGAGGGCGGCGACGAGGTTCCTGTTCGGGAGGCAGTCGTCGATGGACCCGAACCGGCGGCGCGGGCGGAGCCAGAGCCCCGTCGGCCTCGCCGAGGACCTGACCGTGCCGGACAACCTCGACGCCACCATGCAGCTGCTCTTCCTGGCCTGCCACGGCGACGCCGCCGGCGTCGAGGCCCTGCTCCGCGGCGGCGTCGACGTCAACAGCATCAACCTCGACGGCCGCACCGCGCTGCACATCGCCTCCTGCGAGGGCCACCCCGACGTCGTCCGCGTGCTGCTCACCTGGAAGGCCAACATCGACGCCCGCGACCGGTGGGGCAGCACGGCTGTAGCTGATGCCAAGTGTTATGGCCACACGGAGGTGTACAATCTTCTCAAGGCTCGTGGTGCAAAGATCCCGAGAAACAGGAGGACACCGATGATGGTGTCGAATCCTGGGGACGTACCAGAGTACGAATTGAACCCTAGTGAGCTCCAATTCAAGAAAGGGGATGAGGTGGTCAAGGGCGTGTACCAAGTTGCCAAATGGAATGGAACCAAGGTTCATGTTAAGATACTTGATAGAGAATGCTACTGCGATCAGGAAGTCATAAACTCTTTCAGGCATGAGCTGACCGTATTGGAGAAGGTCCGGCACCCGAATGTTGTTCAGTTCGTCGGAGCCGTCACTCAGAACATACCTATGATGATTATTTCTGAATACCTCCCAAATGGTGATTTATCAAGCTGTATTCCGAGGAAAGGAAAGCTACATGGTCAGAAGGTTCTAAAATATGGCCTTGAGATCGCCAGGGGCATGACTTATCTTCACCAGTGCAAGCCAGACCCCATCATCCACTGCGACCTAAAGCCAAAAAATATCTTCCTGGATAGTGGAGGCCAACTGAAAATCGCAGGATTCGGTCTGACGAGGCTGTCGAAAATCTCTCCTGGCAGAGTGAAACTGGCCGATCATGAGTCCATGGTTGACAGCTTCAGTCACTACACTGCACCTGAGCTGTACAGAAACGAAATATTCGACGCAAGCGTCGACGCCTTCTCATTTGGTTTCATCCTCTATGAGATGGTTGAAGGAACACACACTGTACATGGGAAGTCATCAGAGGAATCTGGCCACACAATTCGATATGATGGGATGCGTCCATCGCTGAAGAACAAGCTCAGGGGATATCCTCCAGATTTCAAAGCGCTGATCGAAGAATGCTGGGATACTCAGGGTATAGCAAGGCCAACATTTTCAGAGATAATCATCAGGCTCGACAAGATATACGCCCAGTGCATGAAGCAAGGGACCTGGAAGGACTCGCTAAAGATTTGGAAATGACACGTGTGGGCTAAGCTGCATGAACGCCTTCTTGTGTACATATCACTGCGAAGCAAATGCGTCACTCTCTGTGAAGAAGAAGCCTGAGCTAGCACTCACTCGTCTGGAGGAGGATGACACGACGTACCGACAAATTTGTGTACGTGTTGTAAAAGGCCCGGCGAAAAAAAAAAGTACTTGTAAAAGATCAATTTGAGTTAAATTGGAAGTAACAAAGCTT] [+] EMBL AK070097 [TCTCCCGACGCCTCCGACCTCGCCGCGGAAAGCTTCTCCATCGATCGATCTCTCCTCTCTCTCCCGCGGGGGCTCTCCGGCGCACGGTGCCCTCTCGTGCCTCGGAGACCCCGATCCGCCGCCGCCGCCGCCGCCGCCGTGCCTGAGTAGTACAGTCTTGTTGTCGAGGTGAGGTGAGTGGTGGGAGGAGAAATGGACACCGGGATGAGGGTGGCGCTGCACCGGCAGGTGTCGTCGGGGTCGCTGAAGGAGAGCGGGGAGCTCCGGCGGCAGTCGTCGCTGGAGTCTCCCCGGACGGGGAGGGCGGCGACGAGGTTCCTGTTCGGGAGGCAGTCGTCGATGGACCCGAACCGGCGGCGCGGGCGGAGCCAGAGCCCCGTCGGCCTCGCCGAGGACCTGACCGTGCCGGACAACCTCGACGCCACCATGCAGCTGCTCTTCCTGGCCTGCCACGGCGACGCCGCCGGCGTCGAGGCCCTGCTCCGCGGCGGCGTCGACGTCAACAGCATCAACCTCGACGGCCGCACCGCGCTGCACATCGCCTCCTGCGAGGGCCACCCCGACGTCGTCCGCGTGCTGCTCACCTGGAAGGCCAACATCGACGCCCGCGACCGGTGGGGCAGCACGGCTGTAGCTGATGCCAAGTGTTATGGCCACACGGAGGTGTACAATCTTCTCAAGGCTCGTGGTGCAAAGATCCCGAGAAACAGGAGGACACCGATGATGGTGTCGAATCCTGGGGACGTACCAGAGTACGAATTGAACCCTAGTGAGCTCCAATTCAAGAAAGGGGATGAGGTGGTCAAGGGCGTGTACCAAGTTGCCAAATGGAATGGAACCAAGGTTCATGTTAAGATACTTGATAGAGAATGCTACTGCGATCAGGAAGTCATAAACTCTTTCAGGCATGAGCTGACCGTATTGGAGAAGGTCCGGCACCCGAATGTTGTTCAGTTCGTCGGAGCCGTCACTCAGAACATACCTATGATGATTATTTCTGAATACCTCCCAAATGGTGATTTATCAAGCTGTATTCCGAGGAAAGGAAAGCTACATGGTCAGAAGGTTCTAAAATATGGCCTTGAGATCGCCAGGGGCATGACTTATCTTCACCAGTGCAAGCCAGACCCCATCATCCACTGCGACCTAAAGCCAAAAAATATCTTCCTGGATAGTGGAGGCCAACTGAAAATCGCAGGATTCGGTCTGACGAGGCTGTCGAAAATCTCTCCTGGCAGAGTGAAACTGGCCGATCATGAGTCCATGGTTGACAGCTTCAGTCACTACACTGCACCTGAGCTGTACAGAAACGAAATATTCGACGCAAGCGTCGACGCCTTCTCATTTGGTTTCATCCTCTATGAGATGGTTGAAGGAACACACACTGTACATGGGAAGTCATCAGAGGAATCTGGCCACACAATTCGATATGATGGGATGCGTCC ] [+] EMBL AK100268 [ GGAAAGCTTCTCCATCGATCGATCTCTCCTCTCTCTCCCGCGGGGGCTCTCCGGCGCACGGTGCCCTCTCGTGCCTCGGAGACCCCGATCCGCCGCCGCCGCCGCCGCCGCCGTGCCTGAGTAGTACAGTCTTGTTGTCGAGGTGAGGTGAGTGGTGGGAGGAGAAATGGACACCGGGATGAGGGTGGCGCTGCACCGGCAGGTGTCGTCGGGGTCGCTGAAGGAGAGCGGGGAGCTCCGGCGGCAGTCGTCGCTGGAGTCTCCCCGGACGGGGAGGGCGGCGACGAGGTTCCTGTTCGGGAGGCAGTCGTCGATGGACCCGAACCGGCGGCGCGGGCGGAGCCAGAGCCCCGTCGGCCTCGCCGAGGACCTGACCGTGCCGGACAACCTCGACGCCACCATGCAGCTGCTCTTCCTGGCCTGCCACGGCGACGCCGCCGGCGTCGAGGCCCTGCTCCGCGGCGGCGTCGACGTCAACAGCATCAACCTCGACGGCCGCACCGCGCTGCACATCGCCTCCTGCGAGGGCCACCCCGACGTCGTCCGCGTGCTGCTCACCTGGAAGGCCAACATCGACGCCCGCGACCGGTGGGGCAGCACGGCTGTAGCTGATGCCAAGTGTTATGGCCACACGGAGGTGTACAATCTTCTCAAGGCTCGTGGTGCAAAGATCCCGAGAAACAGGAGGACACCGATGATGGTGTCGAATCCTGGGGACGTACCAGAGTACGAATTGAACCCTAGTGAGCTCCAATTCAAGAAAGGGGATGAGGTGGTCAAGGGCGTGTACCAAGTTGCCAAATGGAATGGAACCAAGGTTCATGTTAAGATACTTGATAGAGAATGCTACTGCGATCAGGAAGTCATAAACTCTTTCAGGCATGAGCTGACCGTATTGGAGAAGGTCCGGCACCCGAATGTTGTTCAGTTCGTCGGAGCCGTCACTCAGAACATACCTATGATGATTATTTCTGAATACCTCCCAAATGGTGATTTATCAAGCTGTATTCCGAGGAAAGGAAAGCTACATGGTCAGAAGGTTCTAAAATATGGCCTTGAGATCGCCAGGGGCATGACTTATCTTCACCAGTGCAAGCCAGACCCCATCATCCACTGCGACCTAAAGCCAAAAAATATCTTCCTGGATAGTGGAGGCCAACTGAAAATCGCAGGATTCGGTCTGACGAGGCTGTCGAAAATCTCTCCTGGCAGAGTGAAACTGGCCGATCATGAGTCCATGGTTGACAGCTTCAGTCACTACACTGCACCTGAGCTGTACAGAAACGAAATATTCGACGCAAGCGTCGACGCCTTCTCATTTGGTTTCATCCTCTATGAGATGGTTGAAGGAACACACACTGTACATGGGAAGTCATCAGAGGAATCTGGCCACACAATTCGATATGATGGGATGCGTCCATCGCTGAAGAACAAGCTCAGGGGATATCCTCCAGATTTCAAAGCGCTGATCGAAGAATGCTGGGATACTCAGGGTATAGCAAGGCCAACATTTTCAGAGATAATCATCAGGCTCGACAAGATATACGCCCAGTGCATGAAGCAAGGGACCTGGAAGGACTCGCTAAAGATTTGGAAATGACACGTGTGGGCTAAGCTGCATGAACGCCTTCTTGTGTACATATCACTGCGAAGCAAATGCGTCACTCTCTGTGAAGAAGAAGCCTGAGCTAGCACTCACTCGTCTGGAGGAGGATGACACGACGTACCGACAAATTTGTGTACGTGTTGTAAAAGGCCCGGCGAAAAAAAAAAGTACTTGTAAAAGATCAATTTGAGTTAAATTGGAAGTAACAAAGCTT] [+] EMBL CF304686 [ tcGCA GGCTGTAGCTGATGCCAAGTGTTATGGCCACACGGAGGTGTACAATCTTCTCAAGGCTCGTGGTGCAAAGATCCCGAGAAACAGGAGGACACCGATGATGGTGTCGAATCCTGGGGACGTACCAGAGTACGAATTGAACCCTAGTGAGCTCCAATTCAAGAAAGGGGATGAGGTGGTCAAGGGCGTGTACCAAGTTGCCAAATGGAATGGAACCAAGGTTCATGTTAAGATACTTGATAGAGAATGCTACTGCGATCAGGAAGTCATAAACTCTTTCAGGCATGAGCTG ] consensusID : consensus_6523#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 383 fasta sequence [GTCATCAGAGGAATCTGGCCACACAATTCGATATGATGGGATGCGTCCATCGCTGAAGAACAAGCTCAGGGGATATCCTCCAGATTTCAAAGCGCTGATCGAAGAATGCTGGGATACTCAGGGTATAGCAAGGCCAACATTTTCAGAGATAATCATCAGGCTCGACAAGATATACGCCCAGTGCATGAAGCAAGGGACCTGGAAGGACTCGCTAAAGATTTGGTCCGTATCTCGGCGATTTAAGAATATCAGATCTAAGCATTTCAGAACCAAAAAGAGAGTCCATGTCGCAATGTGAAAACATAATTGGAGATGGTATGTCATCATATTGTTTCATGGGATTAATTAGCGACTGAAACATTTCTTCTGCATTGCATTTGCAC] [-] EMBL BU572396 [GTCATCAGAGGAATCTGGCCACACAATTCGATATGATGGGATGCGTCCATCGCTGAAGAACAAGCTCAGGGGATATCCTCCAGATTTCAAAGCGCTGATCGAAGAATGCTGGGATACTCAGGGTATAGCAAGGCCAACATTTTCAGAGATAATCATCAGGCTCGACAAGATATACGCCCAGTGCATGAAGCAAGGGACCTGGAAGGACTCGCTAAAGATTTGGTCCGTATCTCGGCGATTTAAGAATATCAGATCTAAGCATTTCAGAACCAAAAAGAGAGTCCATGTCGCAATGTGAAAACATAATTGGAGATGGTATGTCATCATATTGTTTCATGGGATTAATTAGCGACTGAAACATTTCTTCTGCATTGCATTTGCAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6523#0 TCTCCCGACGCCTCCGACCTCGCCGCGGAAAGCTTCTCCATCGATCGATCTCTCCTCTCT 60 consensus_6523#1 ------------------------------------------------------------ consensus_6523#0 CTCCCGCGGGGGCTCTCCGGCGCACGGTGCCCTCTCGTGCCTCGGAGACCCCGATCCGCC 120 consensus_6523#1 ------------------------------------------------------------ consensus_6523#0 GCCGCCGCCGCCGCCGCCGTGCCTGAGTAGTACAGTCTTGTTGTCGAGGTGAGGTGAGTG 180 consensus_6523#1 ------------------------------------------------------------ consensus_6523#0 GTGGGAGGAGAAATGGACACCGGGATGAGGGTGGCGCTGCACCGGCAGGTGTCGTCGGGG 240 consensus_6523#1 ------------------------------------------------------------ consensus_6523#0 TCGCTGAAGGAGAGCGGGGAGCTCCGGCGGCAGTCGTCGCTGGAGTCTCCCCGGACGGGG 300 consensus_6523#1 ------------------------------------------------------------ consensus_6523#0 AGGGCGGCGACGAGGTTCCTGTTCGGGAGGCAGTCGTCGATGGACCCGAACCGGCGGCGC 360 consensus_6523#1 ------------------------------------------------------------ consensus_6523#0 GGGCGGAGCCAGAGCCCCGTCGGCCTCGCCGAGGACCTGACCGTGCCGGACAACCTCGAC 420 consensus_6523#1 ------------------------------------------------------------ consensus_6523#0 GCCACCATGCAGCTGCTCTTCCTGGCCTGCCACGGCGACGCCGCCGGCGTCGAGGCCCTG 480 consensus_6523#1 ------------------------------------------------------------ consensus_6523#0 CTCCGCGGCGGCGTCGACGTCAACAGCATCAACCTCGACGGCCGCACCGCGCTGCACATC 540 consensus_6523#1 ------------------------------------------------------------ consensus_6523#0 GCCTCCTGCGAGGGCCACCCCGACGTCGTCCGCGTGCTGCTCACCTGGAAGGCCAACATC 600 consensus_6523#1 ------------------------------------------------------------ consensus_6523#0 GACGCCCGCGACCGGTGGGGCAGCACGGCTGTAGCTGATGCCAAGTGTTATGGCCACACG 660 consensus_6523#1 ------------------------------------------------------------ consensus_6523#0 GAGGTGTACAATCTTCTCAAGGCTCGTGGTGCAAAGATCCCGAGAAACAGGAGGACACCG 720 consensus_6523#1 ------------------------------------------------------------ consensus_6523#0 ATGATGGTGTCGAATCCTGGGGACGTACCAGAGTACGAATTGAACCCTAGTGAGCTCCAA 780 consensus_6523#1 ------------------------------------------------------------ consensus_6523#0 TTCAAGAAAGGGGATGAGGTGGTCAAGGGCGTGTACCAAGTTGCCAAATGGAATGGAACC 840 consensus_6523#1 ------------------------------------------------------------ consensus_6523#0 AAGGTTCATGTTAAGATACTTGATAGAGAATGCTACTGCGATCAGGAAGTCATAAACTCT 900 consensus_6523#1 ------------------------------------------------------------ consensus_6523#0 TTCAGGCATGAGCTGACCGTATTGGAGAAGGTCCGGCACCCGAATGTTGTTCAGTTCGTC 960 consensus_6523#1 ------------------------------------------------------------ consensus_6523#0 GGAGCCGTCACTCAGAACATACCTATGATGATTATTTCTGAATACCTCCCAAATGGTGAT 1020 consensus_6523#1 ------------------------------------------------------------ consensus_6523#0 TTATCAAGCTGTATTCCGAGGAAAGGAAAGCTACATGGTCAGAAGGTTCTAAAATATGGC 1080 consensus_6523#1 ------------------------------------------------------------ consensus_6523#0 CTTGAGATCGCCAGGGGCATGACTTATCTTCACCAGTGCAAGCCAGACCCCATCATCCAC 1140 consensus_6523#1 ------------------------------------------------------------ consensus_6523#0 TGCGACCTAAAGCCAAAAAATATCTTCCTGGATAGTGGAGGCCAACTGAAAATCGCAGGA 1200 consensus_6523#1 ------------------------------------------------------------ consensus_6523#0 TTCGGTCTGACGAGGCTGTCGAAAATCTCTCCTGGCAGAGTGAAACTGGCCGATCATGAG 1260 consensus_6523#1 ------------------------------------------------------------ consensus_6523#0 TCCATGGTTGACAGCTTCAGTCACTACACTGCACCTGAGCTGTACAGAAACGAAATATTC 1320 consensus_6523#1 ------------------------------------------------------------ consensus_6523#0 GACGCAAGCGTCGACGCCTTCTCATTTGGTTTCATCCTCTATGAGATGGTTGAAGGAACA 1380 consensus_6523#1 ------------------------------------------------------------ consensus_6523#0 CACACTGTACATGGGAAGTCATCAGAGGAATCTGGCCACACAATTCGATATGATGGGATG 1440 consensus_6523#1 -----------------GTCATCAGAGGAATCTGGCCACACAATTCGATATGATGGGATG 43 ******************************************* consensus_6523#0 CGTCCATCGCTGAAGAACAAGCTCAGGGGATATCCTCCAGATTTCAAAGCGCTGATCGAA 1500 consensus_6523#1 CGTCCATCGCTGAAGAACAAGCTCAGGGGATATCCTCCAGATTTCAAAGCGCTGATCGAA 103 ************************************************************ consensus_6523#0 GAATGCTGGGATACTCAGGGTATAGCAAGGCCAACATTTTCAGAGATAATCATCAGGCTC 1560 consensus_6523#1 GAATGCTGGGATACTCAGGGTATAGCAAGGCCAACATTTTCAGAGATAATCATCAGGCTC 163 ************************************************************ consensus_6523#0 GACAAGATATACGCCCAGTGCATGAAGCAAGGGACCTGGAAGGACTCGCTAAAGATTTGG 1620 consensus_6523#1 GACAAGATATACGCCCAGTGCATGAAGCAAGGGACCTGGAAGGACTCGCTAAAGATTTGG 223 ************************************************************ consensus_6523#0 AAATGACACGTGTGGGCTAAGCTGCATGAACGCCTTCTTGTGTACATATCACTGCGAAGC 1680 consensus_6523#1 TC----CGTATCTCGGCGATTTAAGAATATCAGATCTAAGCAT-TTCAGAACCAAAAAGA 278 * * * *** * * * * * * * * ** *** consensus_6523#0 AAATGCGTCACTCTCTGTGAAGAAGAAGCCTGAGCTAGCACTCACTCGTCTGGA---GGA 1737 consensus_6523#1 GAGTCCATGTCGCAATGTGAAAACATAATTGGAGATGGTATGTCATCATATTGTTTCATG 338 * * * * * * ****** * * *** * * * ** * * * consensus_6523#0 GGATGACACGACGTACCGACAAATTTGTGTACGTGTTGTAAAAGGCCCGGCGAAAAAAAA 1797 consensus_6523#1 GGATTAATTAGCG-ACTGAAACATTTCT-TCTGCATTGCATTTGCAC------------- 383 **** * ** ** ** * **** * * * *** * * * consensus_6523#0 AAGTACTTGTAAAAGATCAATTTGAGTTAAATTGGAAGTAACAAAGCTT 1846 consensus_6523#1 ------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||