These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6532#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 985 fasta sequence [CCCCGTCCCCCAAATTCGCATCTCTACCCTCGCCGCCGGCGGCCAAGCGCCACCGCCGACCACCGCCGTCCCCCGCGACCTCGCCGTCGTCGACCACGACGAGCGGTGGCCGCCGCCGCCGCCGCCCTCCTCGAGTTCGACCCCGTTCATCTCATCCGTCGTCCTCCGCGAGATAACCCTCCATCGCTGTCTCGGGCGATGTCGAAGCAGCTGGTGTCGCGGCTGCTGGGGATGTTCCGCTCGCGGGCGCAGGTGGGCGCCGACAAGTTCGGCAACCGCTACTTCACCCGCGTCGAGGAGGTCGACGGCGTCATGAAGGAGAAACGGTGGGTGGAGTTCAAGGGGAGCGACCAGGATCCGACCACTGTTCCAGTTGAGTGGATTTGCTGGTTGAATGGACAAAGGAAGAAAGCTCCGACACCAGAGGAGTTGGCTGAGCTGGAAGCAAGGCGTGAACGTGTCAAGCAAAATATTGAATTGCTCAAAAAGAAAGAAGAGGAAAAGAAGACCGGTGTCCGACCAGTCAAGACGGTTGGGAAGTTTGAATCTCCAAATCTCAAAAGTTTTATTCAGCAGTTTCCTGATACTTCGCTAGATCAGAGAAAAGGACATGATGAGGTATCTAGATCAAAGGATGGAACTGATACAGAGGATGCCACCATAGATACTGACAGGTCTTCTGAACCGACAGGAACTGGTGCTACCTTCAAACCAGGGACATGGCAGCCACCAACTTGAATTACAACAAACATATAATTGTAGCAGGTGAAATGGTGCTGCAGTCAGCATCAGCATTTTCCTTTGAGAGTGTACTATCTTCCAGTTATTTGATGAAGAAATGGAGATTTATTTTTACTGTGATTACCACTGTACACTCCGGGAGTTACATCAACAAATGCAGTATCCGGATGACAACAGATATATACTTACCAATCTTATCAAATACATGATCATTCATGTGCCTGACTAATTAGTTTTGTTATTG] [+] EMBL AK071129 [CCCCGTCCCCCAAATTCGCATCTCTACCCTCGCCGCCGGCGGCCAAGCGCCACCGCCGACCACCGCCGTCCCCCGCGACCTCGCCGTCGTCGACCACGACGAGCGGTGGCCGCCGCCGCCGCCGCCCTCCTCGAGTTCGACCCCGTTCATCTCATCCGTCGTCCTCCGCGAGATAACCCTCCATCGCTGTCTCGGGCGATGTCGAAGCAGCTGGTGTCGCGGCTGCTGGGGATGTTCCGCTCGCGGGCGCAGGTGGGCGCCGACAAGTTCGGCAACCGCTACTTCACCCGCGTCGAGGAGGTCGACGGCGTCATGAAGGAGAAACGGTGGGTGGAGTTCAAGGGGAGCGACCAGGATCCGACCACTGTTCCAGTTGAGTGGATTTGCTGGTTGAATGGACAAAGGAAGAAAGCTCCGACACCAGAGGAGTTGGCTGAGCTGGAAGCAAGGCGTGAACGTGTCAAGCAAAATATTGAATTGCTCAAAAAGAAAGAAGAGGAAAAGAAGACCGGTGTCCGACCAGTCAAGACGGTTGGGAAGTTTGAATCTCCAAATCTCAAAAGTTTTATTCAGCAGTTTCCTGATACTTCGCTAGATCAGAGAAAAGGACATGATGAGGTATCTAGATCAAAGGATGGAACTGATACAGAGGATGCCACCATAGATACTGACAGGTCTTCTGAACCGACAGGAACTGGTGCTACCTTCAAACCAGGGACATGGCAGCCACCAACTTGAATTACAACAAACATATAATTGTAGCAGGTGAAATGGTGCTGCAGTCAGCATCAGCATTTTCCTTTGAGAGTGTACTATCTTCCAGTTATTTGATGAAGAAATGGAGATTTATTTTTACTGTGATTACCACTGTACACTCCGGGAGTTACATCAACAAATGCAGTATCCGGATGACAACAGATATATACTTACCAATCTTATCAAATACATGATCATTCATGTGCCTGACTAATTAGTTTTGTTATTG] consensusID : consensus_6532#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 728 fasta sequence [AGCGACCAGGATCAGACCACTGTTCAAGGCATGTGTGGTTTGTGAACCTTTGATTCTGATTTCCGAAGTATGAATCGACGTGCTTGGATTTTTCTGATAGTTGTGTCACACTTGTAGTTGAGTGGATTTGCTGGTTGAATGGACAAAGGAAGAAAGCTCCGACGCCAGAGGAGTTGGCTGAGCTGGAAGCGAGGCGTGAACGTGTCAAGCAAAATATTGAATTACTCAAAAAAGAAAGAAGAAGAGGAAAAGAAGACCGGTGTCCGACCAGTCAAGACGGTTGGGAAGTTTGAATCTCCAAATCTCAAAAGTTCTATTCCGGAGTTTCCTGATACTTCGCTAGATCAGAGAAAAGGACATGATGAGGTATCTAGACCAAAGGATGGAAGTGATACAGAGGATGCCACCGTAGATACTGACAGGTCTTCTGAACCGACAGGAACTGGTGCTACCTTCAAACCGGGGACATGGCAGCCACCAACATGAATGACAACGAACATATAATTCTAGCAGGTGAAATGGTGTTGCAGTCAGCATCAGCATTTTCCTTTGAGAGTGTACTATCTTCCAGTTATTTGATGAAGAATGGAGATTTATTTTTACTGTGATTACCACTGTACACTCTANGTGCTACATCAACAAATGCAGNTACCGGATGACAACAGATATACTTACCAATCTTATCAAATACATGATCATTTCATGTGGCTGCCTAAAAAAAAAAAAAA] [+] EMBL CA767026 [AGCGACCAGGATCAGACCACTGTTCAAGGCATGTGTGGTTTGTGAACCTTTGATTCTGATTTCCGAAGTATGAATCGACGTGCTTGGATTTTTCTGATAGTTGTGTCACACTTGTAGTTGAGTGGATTTGCTGGTTGAATGGACAAAGGAAGAAAGCTCCGACGCCAGAGGAGTTGGCTGAGCTGGAAGCGAGGCGTGAACGTGTCAAGCAAAATATTGAATTACTCAAAAAAGAAAGAAGAAGAGGAAAAGAAGACCGGTGTCCGACCAGTCAAGACGGTTGGGAAGTTTGAATCTCCAAATCTCAAAAGTTCTATTCCGGAGTTTCCTGATACTTCGCTAGATCAGAGAAAAGGACATGATGAGGTATCTAGACCAAAGGATGGAAGTGATACAGAGGATGCCACCGTAGATACTGACAGGTCTTCTGAACCGACAGGAACTGGTGCTACCTTCAAACCGGGGACATGGCAGCCACCAACATGAATGACAACGAACATATAATTCTAGCAGGTGAAATGGTGTTGCAGTCAGCATCAGCATTTTCCTTTGAGAGTGTACTATCTTCCAGTTATTTGATGAAGAATGGAGATTTATTTTTACTGTGATTACCACTGTACACTCTANGTGCTACATCAACAAATGCAGNTACCGGATGACAACAGATATACTTACCAATCTTATCAAATACATGATCATTTCATGTGGCT ] [-] EMBL CA763336 [ GTGTGGTTTGTGAACCTNTGATTCTGATTTCCGAAGTATGAATCGACGTGCTTGGATTTTTCTGATAGTTGTGTCACACTTGTAGTTGAGTGGATTTGCTGGTTGAATGGACAAAGGAAGAAAGCTCCGACGCCAGAGGAGTTGGCTGAGCTGGAAGCGAGGCGTGAACGTGTCAAGCAAAATATTGAATTACTCAAAAAAGAAAGAAGAAGAGGAAAAGAAGNCCGGTGTCCGACCAGTCAAGACGGTTGGGAAGTTTGAATCTCCAAATCTCAAAAGTTCTATTCCGGAGTTTCCTGATACTTCGCTAGATCAGAGAAAAGGACATGATGAGGTATCTAGACCAAAGGATGGAAGTGATACAGAGGATGCCACCGTAGATACTGACAGGTCTTCTGAACCGACAGGAACTGGTGCTACCTTCAAACCGGGGACATGGCAGCCACCAACATGAATGACAACGAACATATAATTCTAGCAGGTGAAATGGTGTTGCAGTCAGCATCAGCATTTTCCTTTGAGAGTGTACTATCTTCCAGTTATTTGATGAAGAATGGAGATTTATTTTTACTGTGATTACCACTGTACACTCTAGGTGCTACATCAACAAATGCAGTTACCGGATGACAACAGATATACTTACCAATCTTATCAAATACATGATCA TTCATGTGGCTGCCTAAAAAAAAAAAAAA] consensusID : consensus_6532#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 418 fasta sequence [CGGCCAAGCACCACCGCCGTCGTCCTCCGCCACCTCGCCGTCCTCTACCACGACGAGCCGGTGTCCGCCGTTGCCCTCCTCGAGTTCGACCCCGTTCATCTCATCCGTCGTCCTCCGCGAGATAACTCTCCATCGCTGAATCGGGCGATGTCGAAGCAGCTGGTGTCGCGGCTGCTGGGGATGTTCCGCTCGCGGACGCAGGTGCCAGGTGGGCGCCGACAAGTTCGGCAACCGCTACTTCACCCGCGTCGAGGAGGTCGACGGCGTCATGGAGGAGAAACGGTGGGTGGAGTTCAAGGGGAGCGACCAGGATCAGACCACTGTTCAAGTTGAGTGGATTTGCTGGTTGAATGGACAAAGGAAGAAAGCTCCGACGCCAGAGGAGTTGGCTGAGCTGGAAGCGAGGCGTGAACGTGCC] [+] EMBL CF299961 [CGGCCAAGCACCACCGCCGTCGTCCTCCGCCACCTCGCCGTCCTCTACCACGACGAGCCGGTGTCCGCCGTTGCCCTCCTCGAGTTCGACCCCGTTCATCTCATCCGTCGTCCTCCGCGAGATAACTCTCCATCGCTGAATCGGGCGATGTCGAAGCAGCTGGTGTCGCGGCTGCTGGGGATGTTCCGCTCGCGGACGCAGGTGCCAGGTGGGCGCCGACAAGTTCGGCAACCGCTACTTCACCCGCGTCGAGGAGGTCGACGGCGTCATGGAGGAGAAACGGTGGGTGGAGTTCAAGGGGAGCGACCAGGATCAGACCACTGTTCAAGTTGAGTGGATTTGCTGGTTGAATGGACAAAGGAAGAAAGCTCCGACGCCAGAGGAGTTGGCTGAGCTGGAAGCGAGGCGTGAACGTGCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6532#0 ------------------------------------------------------------ consensus_6532#2 ------------------------------------------------------------ consensus_6532#1 AGCGACCAGGATCAGACCACTGTTCAAGGCATGTGTGGTTTGTGAACCTTTGATTCTGAT 60 consensus_6532#0 ------------------------------------------------------------ consensus_6532#2 ------------------------------------------------------------ consensus_6532#1 TTCCGAAGTATGAATCGACGTGCTTGGATTTTTCTGATAGTTGTGTCACACTTGTAGTTG 120 consensus_6532#0 ---------------CCCCGTCCCCCAAATTCGCATCTCTACCCTCGCCGCCGGCGGCCA 45 consensus_6532#2 ------------------------------------------------------CGGCCA 6 consensus_6532#1 AGTGGATTTGCTGGTTGAATGGACAAAGGAAGAAAGCTCCGACGCCAGAGGAGTTGGCTG 180 *** consensus_6532#0 AGC-GCCACCGCCGACCACCGCCGTCCCCCGCGACCTCGCCGTCGTCGACCACGACGAG- 103 consensus_6532#2 AGC-ACCACCGCCG-------TCGTCCTCCGCCACCTCGCCGTCCTCTACCACGACGAG- 57 consensus_6532#1 AGCTGGAAGCGAGGCGTGAACGTGTCAAGCAAAATATTGAATTACTCAAAAAAGAAAGAA 240 *** * ** * *** * * * * * ** * * ** consensus_6532#0 ----------------CGGTGGCCGCCGCCGCCGCCGCCCTCCTCGAGTTCGACCCCGTT 147 consensus_6532#2 ----------------CCGGTGT-----CCGCCGTTGCCCTCCTCGAGTTCGACCCCGTT 96 consensus_6532#1 GAAGAGGAAAAGAAGACCGGTGTCCGACCAGTCAAGACGGTTGGGAAGTTTGAATCTCCA 300 * * * * * * * * **** ** * consensus_6532#0 CATCTCATCCGTCGTCCTCCGCGAGATAACCCTCCATCGCTGTCTCGGGCGA-------T 200 consensus_6532#2 CATCTCATCCGTCGTCCTCCGCGAGATAACTCTCCATCGCTGAATCGGGCGA-------T 149 consensus_6532#1 AATCTCAAAAGTTCTATTCCGGAGTTTCCTGATACTTCGCTAGATCAGAGAAAAGGACAT 360 ****** ** * **** * * * ***** ** * * * consensus_6532#0 GTCGAAGCAGCTGGTGTCGCGGCTGCTGGGGATGTTCCGCTCGCGGGCGCAGGTG----- 255 consensus_6532#2 GTCGAAGCAGCTGGTGTCGCGGCTGCTGGGGATGTTCCGCTCGCGGACGCAGGTGCCAGG 209 consensus_6532#1 GATGAGGTATCTAGACCAAAGGATGGAAGTGATACAGAGGATGCCACCGTAGATACTGAC 420 * ** * * ** * ** ** * *** * ** ** ** * consensus_6532#0 --GGCGCCGACAAGTTCGGCAACCGCTACTTCACCCGCGTCGAGGA---GGTCGACGGCG 310 consensus_6532#2 TGGGCGCCGACAAGTTCGGCAACCGCTACTTCACCCGCGTCGAGGA---GGTCGACGGCG 266 consensus_6532#1 AGGTCTTCTGAACCGACAGGAACTGGTGCTACCTTCAAACCGGGGACATGGCAGCCACCA 480 * * * * * * *** * * ** * * ** *** ** * * * consensus_6532#0 TCATGAAGGAGAAACGGTGGGTGGAGTT--CAAGGGGA--------GCGACCAGGATCCG 360 consensus_6532#2 TCATGGAGGAGAAACGGTGGGTGGAGTT--CAAGGGGA--------GCGACCAGGATCAG 316 consensus_6532#1 ACATGAATGACAACGAACATATAATTCTAGCAGGTGAAATGGTGTTGCAGTCAGCATCAG 540 **** * ** ** * * ** * * * ** *** *** * consensus_6532#0 ACCACTGTTCCAGTTGAGTGG-ATTTGCTGGTTGAATGGACAAAGGAAGAAAGCTCCGAC 419 consensus_6532#2 ACCACTGTTCAAGTTGAGTGG-ATTTGCTGGTTGAATGGACAAAGGAAGAAAGCTCCGAC 375 consensus_6532#1 CATTTTCCTTTGAGAGTGTACTATCTTCCAGTTATTTGATGAAGAATGGAGATTTATTTT 600 * * * ** ** * * *** ** ** ** * * consensus_6532#0 ACCAGAGGAGTTGGCTGAGC--TGGAAGCAAGGCGTGAACGTGTCAAGCAAAATATTGAA 477 consensus_6532#2 GCCAGAGGAGTTGGCTGAGC--TGGAAGCGAGGCGTGAACGTGCC--------------- 418 consensus_6532#1 TACTGTGATTACCACTGTACACTCTANGTGCTACATCAACAAATGCAGNTACCGGATGAC 660 * * * *** * * * * * * *** consensus_6532#0 TTGCTCAAAAAGAAAGAAGAGGAAAAGAAGACCGGTGTCCGACCAGTCAAGACGGTTGGG 537 consensus_6532#2 ------------------------------------------------------------ consensus_6532#1 AACAGATATACTTACCAATCTTATCAAATACATGATCATTTCATGTGGCTGCCTAAAAAA 720 consensus_6532#0 AAGTTTGAATCTCCAAATCTCAAAAGTTTTATTCAGCAGTTTCCTGATACTTCGCTAGAT 597 consensus_6532#2 ------------------------------------------------------------ consensus_6532#1 AAAAAAAA---------------------------------------------------- 728 consensus_6532#0 CAGAGAAAAGGACATGATGAGGTATCTAGATCAAAGGATGGAACTGATACAGAGGATGCC 657 consensus_6532#2 ------------------------------------------------------------ consensus_6532#1 ------------------------------------------------------------ consensus_6532#0 ACCATAGATACTGACAGGTCTTCTGAACCGACAGGAACTGGTGCTACCTTCAAACCAGGG 717 consensus_6532#2 ------------------------------------------------------------ consensus_6532#1 ------------------------------------------------------------ consensus_6532#0 ACATGGCAGCCACCAACTTGAATTACAACAAACATATAATTGTAGCAGGTGAAATGGTGC 777 consensus_6532#2 ------------------------------------------------------------ consensus_6532#1 ------------------------------------------------------------ consensus_6532#0 TGCAGTCAGCATCAGCATTTTCCTTTGAGAGTGTACTATCTTCCAGTTATTTGATGAAGA 837 consensus_6532#2 ------------------------------------------------------------ consensus_6532#1 ------------------------------------------------------------ consensus_6532#0 AATGGAGATTTATTTTTACTGTGATTACCACTGTACACTCCGGGAGTTACATCAACAAAT 897 consensus_6532#2 ------------------------------------------------------------ consensus_6532#1 ------------------------------------------------------------ consensus_6532#0 GCAGTATCCGGATGACAACAGATATATACTTACCAATCTTATCAAATACATGATCATTCA 957 consensus_6532#2 ------------------------------------------------------------ consensus_6532#1 ------------------------------------------------------------ consensus_6532#0 TGTGCCTGACTAATTAGTTTTGTTATTG 985 consensus_6532#2 ---------------------------- consensus_6532#1 ---------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||