These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6536#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 756 fasta sequence [TCCTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACCCAAAACATCCAATCTTCATTATAATAAACGGGCACGGGGGTAAATTCTGAG--GAAGAGG-CGTTGATATATCAAGCTAGGCCGATCCAATTTCCTCTATGTAAAAACAATGAGAACTGAGACCGAAAAAATTAGGCCCCAAGATGATTGCTCAAAATGCATATAAAAATGCAAAACCAAGCCAAAAATGATTACGCTCTACTCCTCTCAACATTAGTGAGGCACACATCCTAAACAAGCACATCGGTGAACGAACGAGACAAACGTCAGGTAATATATGCAGGGGATCAATCTTTGGCTCCTGAGTCATCTTGTCGTTGGCTGGCCTCTCCTGAAGTTCCCTGAACACGTGCAAGAAGATCCTCTAGTTCGGCTAATATATCTGAAAAAGGAGGTCGGTTGGATGGAATGCCTTCCCAACATCTCCGCATCAAGTCTAATAGCTGGGGATGAACATTTTCTGGGAGCCCTGGGCGCAATCCCTGTCTCACACCTACAGCTGCTTGGAG-AGGGGTCATGGTA-TTATAAGGGATCTTGGACGTTATGAGCTCCCAAAGCAC-AATAGC-AAAACTGAACACATCAGCTTTGTTATCATAGGGTTGATGATTTATGACCTCTGGTGGCATCCATCTGTATGTTCCAGTTTCAGCTGTCATGTTACCTCCTTGATCCTGAAAACGAGCTACACCAAAATCTGCCACTTTCACGACA] [+] EMBL CB676811 [TCCTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACCCAAAACATCCAATCTTCATTATAATAAACGGGCACGGGGGTAAATTCTGAGTAGCAG GG CGTTGATATATCAAGCTAGGCCGATCCAATTTCCTCTATGTAAAAACAATGAGAACTGAAACCGAAAAAATTAGGCCCCCAAATGATTGCTCAAAATGCATATAAAAATGCAAAACCAAGCCAAAAATGATTACCCTCTACTCCTCTCAACATTAGGGAGGCACCCATCCTAAACAAGCACCTCGGGGAACCAACGAAACAAACGTCAGGTAATATATGCAGGGGATCAATCTTTGGCTCCTGAATCATCTTGTCGTTGGGTGGCCTCTCCTGAAGTTCCCTGAACACGTGCAAAAAAATCCTCTAATTCGGCTAATATATCTGAAAAAGGAGGTCGGTTGGATGGAATGCCTTCCCAACATCTCCGCATCAAGTCTAATAGCTGGGGATGAACATTTTCTGGGAGCCCTGGGCGCAATCCCTGTCTCACACCTACAGCTGCTTGGAG AGGGGTCCTGGTA TTATAAGGGATCTTGGACGTTATGACCTCCCAAAGCAC AATAGC AAAACTGAACCCCTCAGCTTTGTTATCATAGGGT ] [-] EMBL BQ908379 [ TTTTTTACCCAAAACATCCAATCTTCATTATAATAGACGGGCACGGCGGTAAATTCTGAG TAGCAGGTCGTTGATATATCAAGCTAGGCCGATCCAATTTCCTCTATGTAAGAACAATGAGAACTGAGACCGAAAAAATTAGGCCCCAAGATGATTGCTCAAAATGCATATAAAAATGCAAAACCAAGCCAAAAATGATTACGCTCTACTCCTCTCAACATTAGTGAGGCACACATCCTAAACAAGCACATCGGTGAACGAACGAGACAAACGTCAGGTAATATATGCAGGGGATCAATCTTTGGCTCCTGAGTCATCTTGTCGTTGGCTGGCCTCTCCTGAAGTTCCCTGAACACGTGCAAGAAGATCCTCTAGTTCGGCTAATATATCTGAGAAAGGAGGTCGGTTGGATGGAATGCCTTCCCAACATCTCCGCATCAAGTCTAATAGCTGGGGATGAGCATTTTCTGGGAGCCCTGGGCGCAATCCCTGTCTCACACCTACAGCTGCTTGGAGAAGGGGTCATGGTACTTATAAGGGATCTTGGACGTTATGAGCTCCCAAAGCACAAATAGCAAAAACTGAACACATCAGCTTT ] [+] EMBL CB652354 [ GAAGAGG CGTTGATATATCAAGCTAGGCCGATCCAATTTCCTCTATGTACCCCCAATGAGAACTGAGACCGAAAAAATTAGGCCCCAAGATGATTGCTCAAAATGCATATAAAAATGCAAAACCAAGCCAAAAATGATTACGCTCTACTCCTCTCAAGATTAGTGAGGCACACATCCTAAACAAGCACATGGGTGAACGAACGAGACAAACGTCAGGTAATATATGCAGGGGATCAATCTTTGGCTCCTGAGTCATCTTGTCGTTGGCTGGCCTCTCCTGAAGTTCCCTGAACACGTGCAAGAAGATCCTCTAGTTCGGCTAATATATCTGAAAAAGGAGGTCGGTTGGATGGAATGCCTTCCCAACATCTCCGCATAAAGTCTAATAACTGGGGATGATCATTTTCTGGGAGCCCTGGGCGCAATCCCTGTCTCACACCTACAGCTGCTTGGAG AGGGGTCATGGTA TTATAAGGGATCTTGGACGTTATGAGCTCCCAAAGCAC AATAGC AAAACTGAACACATCATCTTTGTTATCATAGGGTTGATGATTTATGACCTCTGGTGGCATCCATCTGTATGTTCCAGTTTCAGCTGTCATGTTACCTCCTTGATCCTGAAAACGAGCTACACCAAAATCTGCCACTTTCACGACA] consensusID : consensus_6536#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 134 fasta sequence [AAACATCCAATCTTCATTATAATAGACGGGCACGGCGGTAAATTCTGAGTAGCAGGTCGTTGATATATCAAGCTAGGCCGATCCAATTTCCTCTATGTAAGAACAATGAGAACTGAGACCCCCCTTGTCTCGTC] [-] EMBL CB096297 [AAACATCCAATCTTCATTATAATAGACGGGCACGGCGGTAAATTCTGAGTAGCAGGTCGTTGATATATCAAGCTAGGCCGATCCAATTTCCTCTATGTAAGAACAATGAGAACTGAGACCCCCCTTGTCTCGTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6536#0 TCCTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACCCAAAACATCCAA 60 consensus_6536#1 --------------------------------------------------AAACATCCAA 10 ********** consensus_6536#0 TCTTCATTATAATAAACGGGCACGGGGGTAAATTCTGAGGAAGAGG-CGTTGATATATCA 119 consensus_6536#1 TCTTCATTATAATAGACGGGCACGGCGGTAAATTCTGAGTAGCAGGTCGTTGATATATCA 70 ************** ********** ************* * *** ************* consensus_6536#0 AGCTAGGCCGATCCAATTTCCTCTATGTAAAAACAATGAGAACTGAGACCGAAAAAATTA 179 consensus_6536#1 AGCTAGGCCGATCCAATTTCCTCTATGTAAGAACAATGAGAACTGAGACCCCCCTTGTCT 130 ****************************** ******************* * consensus_6536#0 GGCCCCAAGATGATTGCTCAAAATGCATATAAAAATGCAAAACCAAGCCAAAAATGATTA 239 consensus_6536#1 CGTC-------------------------------------------------------- 134 * * consensus_6536#0 CGCTCTACTCCTCTCAACATTAGTGAGGCACACATCCTAAACAAGCACATCGGTGAACGA 299 consensus_6536#1 ------------------------------------------------------------ consensus_6536#0 ACGAGACAAACGTCAGGTAATATATGCAGGGGATCAATCTTTGGCTCCTGAGTCATCTTG 359 consensus_6536#1 ------------------------------------------------------------ consensus_6536#0 TCGTTGGCTGGCCTCTCCTGAAGTTCCCTGAACACGTGCAAGAAGATCCTCTAGTTCGGC 419 consensus_6536#1 ------------------------------------------------------------ consensus_6536#0 TAATATATCTGAAAAAGGAGGTCGGTTGGATGGAATGCCTTCCCAACATCTCCGCATCAA 479 consensus_6536#1 ------------------------------------------------------------ consensus_6536#0 GTCTAATAGCTGGGGATGAACATTTTCTGGGAGCCCTGGGCGCAATCCCTGTCTCACACC 539 consensus_6536#1 ------------------------------------------------------------ consensus_6536#0 TACAGCTGCTTGGAGAGGGGTCATGGTATTATAAGGGATCTTGGACGTTATGAGCTCCCA 599 consensus_6536#1 ------------------------------------------------------------ consensus_6536#0 AAGCACAATAGCAAAACTGAACACATCAGCTTTGTTATCATAGGGTTGATGATTTATGAC 659 consensus_6536#1 ------------------------------------------------------------ consensus_6536#0 CTCTGGTGGCATCCATCTGTATGTTCCAGTTTCAGCTGTCATGTTACCTCCTTGATCCTG 719 consensus_6536#1 ------------------------------------------------------------ consensus_6536#0 AAAACGAGCTACACCAAAATCTGCCACTTTCACGACA 756 consensus_6536#1 ------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||