These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6540#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 814 fasta sequence [GGACGGCAGACCAACTGCCATTGAAGGAGGCGAGGAGTATAAACCTGGGACGTGCGGGAGCGAAGGGGCACTCAAGCGATGACTGCTACCTTTCCTTTGCCGAATTGCATGTATCTGTCTTAAACCCCGCTCGTGGATGTTTGTGAGTGTCTCAAGCTCATCCAGTGATAAAGCTTCCACGCCGACACCATACACGGGAGCATGCCGTGCCATCTCTTCCTGAATTGAGGTCTCCAGGGTGTGAATATATTGCTGCAATAGGAAGATATGTGTCAGAAATCAAATATAGTGTGAAAAGGTCTGGGGAAGTTATTAAAGAAGAAAAAAGTGAATTGTGACAAATACGGTGAGCTTTTTCATCATTACGATTTACAAATACCACTGAACATTCCAAAATCATTTAATCATTTAAGAGCAGAAATATAAAAAACTGAATGCAAACATGCCTTAAATGCGTGCAATTGCACGTTTAATGTTACGCAGGCCACAATTTATCAGTTGACTGTTGGTTCAACGCCGTACAATCTACTACATAAACTGTAGAATGACCTACTTTCAACATTTTTGCATGCTCTTTACAGAATGNTGAATTTAGGCCAATCGTTCCTAATATAAAGTGGAAATGGTAGTTGNTAAAACATTCCAAACTGGTACCCAAAAAAAAGTGGAGCACCCAAANTTTGATCCATGGGTTAAAACTAAGATNAACTATAATTAGACATTAAGGCTATTACTTANGTTGCTGGTCTCCAAA-TACTTTATTTTAATGACTAAATTTAATAAGNGGNAAACAACTCTGCGCCTTAAAGGAGNT] [+] EMBL CB096610 [GGACGGCAGACCAACTGCCATTGAAGGAGGCGAGGAGTATAAACCTGGGACGTGCGGGAGCGAAGGGGCACTCAAGCGATGACTGCTACCTTTCCTTTGCCGAATTGCATGTATCTGTCTTAAACCCCGCTCGTGGATGTTTGTGAGTGTCTCAAGCTCATCCAGTGATAAAGCTTCCACGCCGACACCATACACGGGAGCATGCCGTGCCATCTCTTCCTGAATTGAGGTCTCCAGGGTGTGAATATATTGCTGCAATAGGAAGATATGTGTCAGAAATCAAATATAGTGTGAAAAGGTCTGGGGAAGTTATTAAAGAAGAAAAAAGTGAATTGTGACAAATACGGTGAGCTTTTTCATCATTACGATTTACAAATACCACTGAACATTCCAAAATCATTTAATCATTTAAGAGCAGAAATATAAAAAACTGAATGCAAACATGCCTTAAATGCGTGCAATTGCACGTTTAATGTTACGCAGGCCACAATTTATCAGTTGACTGTTGGTTCAACGCCGTACAATCTACTACATAAACTGTAGAATGACCTACTTTCAACATTTTTGCATGCTCTTTACAGAATGNTGAATTTAGGCCAATCGTTCCTAATATAAAGTGGAAATGGTAGTTGNTAAAACATTCCAAACTGGTACCCAAAAAAAAGTGGAGCACCCAAANTTTGATCCATGGGTTAAAACTAAGATNAACTATAATTAGACATTAAGGCTATTACTTANGTTGCTGGTCTCCAAA TACTTTATTTTAATGACTAAATTTAATAAGNGGNAAACAACTCTGCGCCTTAAAGGAGNT] [+] EMBL CA766201 [GGACGGCAGACCAACTGCCTTTGAAGGAGGCGAGGAGTATAAACCTGGGACGTGCGGGAGCGAAGGGGCACTCAAGCGATGACTGCTACCTTTCCTTTGCCGAATTGCATGTATCTGTCTTAAACCCCGCTCGTGGATGTTTGTGAGTGTCTCAAGCTCATCCAGTGATAAAGCTTCCACGCCGACACCATACACGGGAGCATGCCGTGCCATCTCTTCCTGAATTGAGGTCTCCAGGGTGTGAATATATTGCTGCAATAGGAAGATATGTGTCAGAAATCAAATATAGTGTGAAAAGGTCTGGGGAAGTTATTAAAGAAGAAAAAAGTGAATTGTGACAAATACGGTGAGCTTTTTCATCATTACGATTTACAAATACCACTGAACATTCCAAAATCATTTAATCATTTAAGAGCAGAAATATAAAAAACTGAATGCAAACATGCCTTAAATGCGTGCAATTGCACGTTTAATGTTACGCAGGCCACAATTTATCAGTTGACTGTTGGTTCAACGCCGTACAATTTACTACATAAACTGTAGAATGACCTACTTTCAACATTTTTGCATGCTCTTTACAGAATGTTGAATTTAGGCCAATCGTTCCCAATATAAAGTGGAAAT GTAGTTGTTAAAACATTCCAAACTGGTACCCAAAAAAAAGTGGAGCACCCAAA TTTGATCCAT GGTTAAAACTAAGATAAACTATAATTAGACATTAAGGCTATTACTTA GTTGCTGGTCTCCAAATTACTTTATTTTAATGACTAATTTTAAT ] consensusID : consensus_6540#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 695 fasta sequence [ACCATTTCGATAGCTTTCCCACTTGCACCTGAATACCTGGTAGTTCCATCGGATTATCTTGATTATTACAACTTATTCCATGCGGAAACCCCCTTAACGCTCTTTGATCTATCAAGCCGACGGCGCTACCAGTTCAAAATACAAGCAAGAAAAGCCAAACCAAATGGCGAGGACAAAAAGGGTATCACGTTGGATTGCTCAGCAGCTGGTAAATACGGCCAGGCAAAATGTGATACGTCGAATTGATGCACAAAATGGACACCGGTGTTGCGGTGCTGCATCTTCTGAATTAGGTTGGATTGAACCAGCTACCCATGGAACCATTCATGTGGCCATTTCCATGGATGCCTGCACCATTAGGTGCTACGGACGATGTGGGGATCAGCGAGGACGGCAGACCAACTGCCATTGAAGGAGGCGAGGAGTATAAACCTGGGACGTGCGGGAGCGAAGGGGCACTCAAGCGATGACTGCTACCTTTCCTTTGCCGAATTGCATGTATCTGTCTTAAACCCCGCTCGTGGATGTTTGTGAGTGTCTCAAGCTCATCCAGTGATAAAGCTTCCACGCCGACACCATACACGGGAGCATGCCGTGCCATCTCTTCCTGAATTGAGGTCTCCAGGGTGTGAATATATTGCTGGCAAACTTGTAGTTTTGACTCCATTCCATCTATGTAAGCTTCACAACGAGTA] [-] EMBL AK108796 [ACCATTTCGATAGCTTTCCCACTTGCACCTGAATACCTGGTAGTTCCATCGGATTATCTTGATTATTACAACTTATTCCATGCGGAAACCCCCTTAACGCTCTTTGATCTATCAAGCCGACGGCGCTACCAGTTCAAAATACAAGCAAGAAAAGCCAAACCAAATGGCGAGGACAAAAAGGGTATCACGTTGGATTGCTCAGCAGCTGGTAAATACGGCCAGGCAAAATGTGATACGTCGAATTGATGCACAAAATGGACACCGGTGTTGCGGTGCTGCATCTTCTGAATTAGGTTGGATTGAACCAGCTACCCATGGAACCATTCATGTGGCCATTTCCATGGATGCCTGCACCATTAGGTGCTACGGACGATGTGGGGATCAGCGAGGACGGCAGACCAACTGCCATTGAAGGAGGCGAGGAGTATAAACCTGGGACGTGCGGGAGCGAAGGGGCACTCAAGCGATGACTGCTACCTTTCCTTTGCCGAATTGCATGTATCTGTCTTAAACCCCGCTCGTGGATGTTTGTGAGTGTCTCAAGCTCATCCAGTGATAAAGCTTCCACGCCGACACCATACACGGGAGCATGCCGTGCCATCTCTTCCTGAATTGAGGTCTCCAGGGTGTGAATATATTGCTGGCAAACTTGTAGTTTTGACTCCATTCCATCTATGTAAGCTTCACAACGAGTA] consensusID : consensus_6540#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 399 fasta sequence [TGCCCGTGTGCCCCCCGTATGTGTATCCCAGCGTGTCTGAGCCACANTCCCACACGGTGAGTACCCGTTGTTTGNTCCGTCTGCCACNTTTGGTTTGGCGTTTTCTCTTGCCGTGTGTATATGTTNTGAAACTTGGTAGCGCCCGCTCGGCTTGAATATGATCACAAGAGCGTTAAGGGGGTTTCCGCATGGAATAAGTGTGTGAATAATCACAGATGAATCCGATGGAACTACCACGGTATTCAGGTGCAAAGTGGGAAAGCTATCGAAATGGTTGATATGCACCCATTGCTTGGTTATTTGCTAAAAGCCTTGGGATTTTTTTTTTTTTTTTTTTTTTTTGTTCAAACTTCTGGAAAGGTGCAACATGAGAAAAGTATTCCAGTTTCAAAAAAAAAA] [+] EMBL BQ908053 [TGCCCGTGTGCCCCCCGTATGTGTATCCCAGCGTGTCTGAGCCACANTCCCACACGGTGAGTACCCGTTGTTTGNTCCGTCTGCCACNTTTGGTTTGGCGTTTTCTCTTGCCGTGTGTATATGTTNTGAAACTTGGTAGCGCCCGCTCGGCTTGAATATGATCACAAGAGCGTTAAGGGGGTTTCCGCATGGAATAAGTGTGTGAATAATCACAGATGAATCCGATGGAACTACCACGGTATTCAGGTGCAAAGTGGGAAAGCTATCGAAATGGTTGATATGCACCCATTGCTTGGTTATTTGCTAAAAGCCTTGGGATTTTTTTTTTTTTTTTTTTTTTTTGTTCAAACTTCTGGAAAGGTGCAACATGAGAAAAGTATTCCAGTTTCAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6540#0 GGACGGCAGACCAACTGCCATTGAAGGAGGCGAGGAGTATAAACCTGGGACGTGCGGGAG 60 consensus_6540#1 ------------------------------------------------------------ consensus_6540#2 ------------------------------------------------------------ consensus_6540#0 CGAAGGGGCACTCAAGCGATGACTGCTACCTTTCCTTTGCCGAATTGCATGTATCTGTCT 120 consensus_6540#1 ---------------------ACCATTTCGATAGCTTTCCC-ACTTGCACCTGAATACCT 38 consensus_6540#2 ---------------------------------------------TGCCCGTGTGCCCCC 15 *** * * consensus_6540#0 TAAACCCCGCTCGTGGATGTTTGTGAGTGTCTCAAGCTCATCCAGTGATAAAGCTTCCAC 180 consensus_6540#1 GGTAGTTCCATCG--GATTATCTTGATTATTACAA-CTTATTCCATGCGGAAACCCCCTT 95 consensus_6540#2 CGTATGTGTATCCCAGCGTGTC-TGA--GCCACANTCCCACACGGTGAGTACCCGTTGTT 72 * ** * * *** ** * * * ** * * consensus_6540#0 GCCGACACCATACACGG-GAGCATGCCGTGCCATCTCTTCCTGAATTGAGGTCTCCAGGG 239 consensus_6540#1 AACGCTCTTTGATCTATCAAGCCGACGGCGCTACCAGTTCA-AAATACAAGCAAGAAAAG 154 consensus_6540#2 TGNTCCGTCTGCCACNTTTGGTTTGGCGTTTTCTCTTGCCGTGTGTATATGTTNTGAAAC 132 * * * * * * * * consensus_6540#0 TGTGA-----ATATATTGCTGCAATAGGAAGA-TAT-GTGTCAGAA-ATCAAATATAGTG 291 consensus_6540#1 CCAAA-----CCAAATGGCGAGGACAAAAAGGGTATCACGTTGGATTGCTCAGCAGCTGG 209 consensus_6540#2 TTGGTAGCGCCCGCTCGGCTTGAATATGATCACAAGAGCGTTAAGGGGGTTTCCGCATGG 192 ** * * * * ** * consensus_6540#0 TGAAAAGGTCTGGGGAAGTTATTAAAGAAGAAAAAAGTGAATTGTGACAAATACGGTGAG 351 consensus_6540#1 TAAATACGGCCAGGCAAAATGTGATACGTCGAATTGATGCACAAAATGGACACCGGTG-- 267 consensus_6540#2 AATAAGTGTGTGAATAATCACAGATGAATCCGATGGAACTACCACG-GTATTCAGGTG-- 249 * * ** * * * * **** consensus_6540#0 CTTTTTCATCATTACGATTTACAAATACCACTGAACATTCCAAAATCATTTAATCATTTA 411 consensus_6540#1 ---TTGCGGTGCTGCATCTTCTGAATTAGGTTGGATT-----GAACCAGCTACCCAT--G 317 consensus_6540#2 ----CAAAGTGGGAAAGCTATCGAA--ATGGTTGATATGCACCCATTGCTTGGTTATTTG 303 * ** * * * * ** consensus_6540#0 AGAGCAGAAATATAAAAAACTGAATGCAAACATGCCTTAAATGCGTGCAATTGCACGTTT 471 consensus_6540#1 GAACCATTCATGTGGCCATTTCCATGGATGCCTGCACCAT-TAGGTGCTACGGACGATGT 376 consensus_6540#2 CTAAAAGCCTTG-GGATTTTTTTTTTTTTTTTTTTTTTTTGTTCAAACTTCTGGAAA--- 359 * * * * * * * * * consensus_6540#0 AATGTTACGCAGGCCACAATTTATCAGTTG--ACTGTTGGTTCAACGCCGTACAA-TCTA 528 consensus_6540#1 GGGGATCAGCGAGG-ACGGCAGACCAACTGCCATTGAAGGAGGCGAGGAGTATAAACCTG 435 consensus_6540#2 GGTGCAACATGAGA-AAAGTATTCCAGTTTCAAAAAAAAAA------------------- 399 * * * ** * * consensus_6540#0 CTACATAAACTGTAGAATGACCTACTTTCAACATTTTTGCATGCTCTTTACAGAATGNTG 588 consensus_6540#1 GGACGTGCGGGAGCGAAGGGGC-ACTCAAGCGATGACTGCTACCTTTCCTT----TGCCG 490 consensus_6540#2 ------------------------------------------------------------ consensus_6540#0 AATTTAGGCCAATCGTTCCTAATATAAAGTGGAAATGGTAGTTGNTAAAACATTCCAAAC 648 consensus_6540#1 AATTGCATGTATCTGTCTTAAACCCCGCTCGTGGATGTTTGTGAGTG-----TCTCAAGC 545 consensus_6540#2 ------------------------------------------------------------ consensus_6540#0 TGGTACCCAAAAAAAAGTGGAGCACCCAAANTTTGATCCATGGGTTA--AAACTAAGATN 706 consensus_6540#1 TCATCCAGTGATAAAGCTTCCACGCCGACACCATACACGGGAGCATGCCGTGCCATCTCT 605 consensus_6540#2 ------------------------------------------------------------ consensus_6540#0 AACTATAATTAGACATTAAGGCTATTACTTANGTTGCTGGTCTCCAAATACTTTATTTTA 766 consensus_6540#1 TCCTGAATTGAGGTCTCCAGGGTGTGAAT-ATATTGCTGG----CAAACTTGTAGTTTT- 659 consensus_6540#2 ------------------------------------------------------------ consensus_6540#0 ATGACTAAATTTAATAAGNGGNAAACAACTCTGCGCCTTAAAGGAGNT 814 consensus_6540#1 --GACTCCATTCCATCTATG-TAAGCTTCACAACGAGTA--------- 695 consensus_6540#2 ------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||