These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6542#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 848 fasta sequence [CTGATCCATTCCCCCCACCCCGCCTATTGATTGATCTGCTCGCCTCCGCCATTGTCGTTGTCGATCTCTTCTGAAGGGTGAGCGCCGGCTGCGGCAGGGAGGCGTGTGTTGCTGCCGCAGATCGATGGAGGTGGATGCCTCCGCGGTCGCAAGAGCACTACCAAGAGATTTCCCTCCCATCGAGAACTTGAGCTTCGAAGGCTTCCCCCGTTATACTTTCAAGATCGGCAACCGGATCCACTGCACCAACTTGATGTATCGCCCAGGTAGTCGGACGCTATTAACGCAGGAAGAAGCTCATGAGATCATTCGCGAGGGCTTGAGGTCTGACATTCGTCGGGGCCGCATACAACTGAACGCCGACTTCTTGCAGCAGCTTGTTGATCAGGTTCGCGATCATATTCTTCAGCGTCAGCGCCGTGGCACTGCCACTGCCATGGATGGAGTAGTGGAGGTGGAGGATGCGTACAGGAACGGTGGGTTCGGCGCTATCCCCGCGTCGAGCAAGGCCATGGCCGAGCTGCAGGAGGCGATGGCAAGCGACGCCAGGGAACGCGGGTGCGCTGTGTGCCTGGAGGATTTCGAGGCGGGAGAGAAGCTGACGAGGATGCCCTGCTCGCATTGCTTCCATGCGACCTGCATCTCGGATTGGCTCCGCCTCAGCCATCGTTGCCCGCTCTGCAGATTCCCGATGCCAACCCAAGACCAATCTTACTAGGCTGTAAGAGGATAACGCCGCGGCCAGAGATGAAACAAATCATACAACTCTTGTGCTTACTCATGCTCCATCAAACACCATTCCTTTCATGTACCATCTGTCATTTATGATCGAATAACTAATCATATGC] [+] EMBL AK108475 [CTGATCCATTCCCCCCACCCCGCCTATTGATTGATCTGCTCGCCTCCGCCATTGTCGTTGTCGATCTCTTCTGAAGGGTGAGCGCCGGCTGCGGCAGGGAGGCGTGTGTTGCTGCCGCAGATCGATGGAGGTGGATGCCTCCGCGGTCGCAAGAGCACTACCAAGAGATTTCCCTCCCATCGAGAACTTGAGCTTCGAAGGCTTCCCCCGTTATACTTTCAAGATCGGCAACCGGATCCACTGCACCAACTTGATGTATCGCCCAGGTAGTCGGACGCTATTAACGCAGGAAGAAGCTCATGAGATCATTCGCGAGGGCTTGAGGTCTGACATTCGTCGGGGCCGCATACAACTGAACGCCGACTTCTTGCAGCAGCTTGTTGATCAGGTTCGCGATCATATTCTTCAGCGTCAGCGCCGTGGCACTGCCACTGCCATGGATGGAGTAGTGGAGGTGGAGGATGCGTACAGGAACGGTGGGTTCGGCGCTATCCCCGCGTCGAGCAAGGCCATGGCCGAGCTGCAGGAGGCGATGGCAAGCGACGCCAGGGAACGCGGGTGCGCTGTGTGCCTGGAGGATTTCGAGGCGGGAGAGAAGCTGACGAGGATGCCCTGCTCGCATTGCTTCCATGCGACCTGCATCTCGGATTGGCTCCGCCTCAGCCATCGTTGCCCGCTCTGCAGATTCCCGATGCCAACCCAAGACCAATCTTACTAGGCTGTAAGAGGATAACGCCGCGGCCAGAGATGAAACAAATCATACAACTCTTGTGCTTACTCATGCTCCATCAAACACCATTCCTTTCATGTACCATCTGTCATTTATGATCGAATAACTAATCATATGC] consensusID : consensus_6542#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 670 fasta sequence [TGAGGAGGATGCCCTGCTCGCATTGCTTCCATGCGACCTGCATCTTGGATTGGCTCCGCCTCAGCCATCGCTGCCCGCTCTGCAGATTCCCGATGCCAACCCAAGACCAATCTTACTAGGCTGTAAGAGGATAACGCCGCGGCCAGAGATGAAACAAATCATACAACTCTTGTGCGTACTCATGCTCCATCAAACACCATTCCATTCATGTACCATCTGTTATTATTCATGTTTTATGATCGGATTGCTATTGTTTCGGGGTATTACAGTGCCAACATTGGGATTCCCCTCGAAAGATGAACATACTTTCCCGCTAAAAGCTTCCTCTAGTTCTTCCCAGCTCGCTTGCTTCTCTTGCAGTAGAAGCTTCATCCTCTACCAAAGAAAGCTCCTTGCACTCCTCATTGGCGTTCATGTCCTGGAGCCCGAGGACAGCCATTACCACAGCGACATCACGACATCGCCATGTATGAGCTGTTGGAATATAAACATGTAATCTTGAGCATCGATTCATCTGTTTGCTTGCATGTAGTTAGCCGGCTGGAAACACTTTGGATTCGGCCGAAAGAATAGTTCTTTTAAGGGTTACATGTTTCCTGGTTTATAGTTGCGATGACCCGGGTCAGATCGTATTGAATTTGAACTTGCATGTTTGNGGAATGATATATTA] [+] EMBL CA763988 [TGAGGAGGATGCCCTGCTCGCATTGCTTCCATGCGACCTGCATCTTGGATTGGCTCCGCCTCAGCCATCGCTGCCCGCTCTGCAGATTCCCGATGCCAACCCAAGACCAATCTTACTAGGCTGTAAGAGGATAACGCCGCGGCCAGAGATGAAACAAATCATACAACTCTTGTGCGTACTCATGCTCCATCAAACACCATTCCATTCATGTACCATCTGTTATTATTCATGTTTTATGATCGGATTGCTATTGTTTCGGGGTATTACAGTGCCAACATTGGGATTCCCCTCGAAAGATGAACATACTTTCCCGCTAAAAGCTTCCTCTAGTTCTTCCCAGCTCGCTTGCTTCTCTTGCAGTAGAAGCTTCATCCTCTACCAAAGAAAGCTCCTTGCACTCCTCATTGGCGTTCATGTCCTGGAGCCCGAGGACAGCCATTACCACAGCGACATCACGACATCGCCATGTATGAGCTGTTGGAATATAAACATGTAATCTTGAGCATCGATTCATCTGTTTGCTTGCATGTAGTTAGCCGGCTGGAAACACTTTGGATTCGGCCGAAAGAATAGTTCTTTTAAGGGTTACATGTTTCCTGGTTTATAGTTGCGATGACCCGGGTCAGATCGTATTGAATTTGAACTTGCATGTTTGNGGAATGATATATTA] consensusID : consensus_6542#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 557 fasta sequence [GTGGTGGATGTGGATCTCGTCCCCACTACTCCACCGCGCCTCTCGCTTCCTCCGTCCCCAGCCGCGCCGCTCGCTGCCTCCGTTTACAGCCGTGACGCTCGCTAGTCGCTACCTCCACCCCAGCCGCGTCGCTCACTGTTTTCCTCCACCGCCGCAGTCTCTGTCCCCACCCGCGCCGCTCGTTGATCCACGTTTGGGGGCGGATCCGAGTCGGATTCACTCTCGATTTCGATCGGGACGCGGAGTCCGATCGATTTCTTCGTCTATAAACTCTGCAGGGGACGTACGGTGAGCGCCTCCGGCGTGTGTTGCTGCCGCAGATCGATGGAGGTGGATGCCTCCGCGGTCGCAAGAGCACTACCAAGAGATTTCCCTCCCATCGAGAACTTGAGCTTCGAAGGCATCCCCCGTTATACTTTCAAGATTGGCAACCGGATCCACTGCACCAACTTGATGTACCGCCCAGGTAGTCGGACGCTATTAACGCAGGAAGAAGCTCATGAGATCATTCGCGAGCGCTTGAGGTCTGACATTCGTCGGGGCCGCATAGAACTGGA] [+] EMBL CF337595 [GTGGTGGATGTGGATCTCGTCCCCACTACTCCACCGCGCCTCTCGCTTCCTCCGTCCCCAGCCGCGCCGCTCGCTGCCTCCGTTTACAGCCGTGACGCTCGCTAGTCGCTACCTCCACCCCAGCCGCGTCGCTCACTGTTTTCCTCCACCGCCGCAGTCTCTGTCCCCACCCGCGCCGCTCGTTGATCCACGTTTGGGGGCGGATCCGAGTCGGATTCACTCTCGATTTCGATCGGGACGCGGAGTCCGATCGATTTCTTCGTCTATAAACTCTGCAGGGGACGTACGGTGAGCGCCTCCGGCGTGTGTTGCTGCCGCAGATCGATGGAGGTGGATGCCTCCGCGGTCGCAAGAGCACTACCAAGAGATTTCCCTCCCATCGAGAACTTGAGCTTCGAAGGCATCCCCCGTTATACTTTCAAGATTGGCAACCGGATCCACTGCACCAACTTGATGTACCGCCCAGGTAGTCGGACGCTATTAACGCAGGAAGAAGCTCATGAGATCATTCGCGAGCGCTTGAGGTCTGACATTCGTCGGGGCCGCATAGAACTGGA] consensusID : consensus_6542#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 543 fasta sequence [TTTTTATCTGAATTTTTTTTATTTCTAGTTTTCCTGCGAGTCCCTTATGGAATATTCCGTCTCCAGTTCTCCCATGAATCCCTTATGGAAATTTGTATCGAAATGTTGAAATTTACATAGTTATATACTTCTGCTTTCTTGATCTTCAATTCAAAGTCTGTAATAGCTCTTTGCATTATCCTTCTTTTTCTCTGTTGTTCTCATTCTTGTTTCTGCGCAAATATGTTCATAGTACAAGTCTGCTCCTCCTTATACGAAGGTGTTCCTACCTCTGTTACTATGTCTGAATTTTCTTCTTTTCTGAACATTATGGCGATGTCGTGATGTCGCTGTGGTAATGGCTGTCCTCGGGCTCCAGGACATGAACGCCAATGAGGAGTGCAAGGAGCTTTCTTTGGTAGAGGATGAAGCTTCTACTGCAAGAGAAGCAAGCGAGCTGGGAAGAACTAGAGGAAGCTTTTAGCGGGAAAGTATGTTCATCTTTCGAGGGGAATCCCAATGTTGGCACTGTAATACCCCGAAACAATAGCAATCCGATCATAA] [+] EMBL CF337596 [TTTTTATCTGAATTTTTTTTATTTCTAGTTTTCCTGCGAGTCCCTTATGGAATATTCCGTCTCCAGTTCTCCCATGAATCCCTTATGGAAATTTGTATCGAAATGTTGAAATTTACATAGTTATATACTTCTGCTTTCTTGATCTTCAATTCAAAGTCTGTAATAGCTCTTTGCATTATCCTTCTTTTTCTCTGTTGTTCTCATTCTTGTTTCTGCGCAAATATGTTCATAGTACAAGTCTGCTCCTCCTTATACGAAGGTGTTCCTACCTCTGTTACTATGTCTGAATTTTCTTCTTTTCTGAACATTATGGCGATGTCGTGATGTCGCTGTGGTAATGGCTGTCCTCGGGCTCCAGGACATGAACGCCAATGAGGAGTGCAAGGAGCTTTCTTTGGTAGAGGATGAAGCTTCTACTGCAAGAGAAGCAAGCGAGCTGGGAAGAACTAGAGGAAGCTTTTAGCGGGAAAGTATGTTCATCTTTCGAGGGGAATCCCAATGTTGGCACTGTAATACCCCGAAACAATAGCAATCCGATCATAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6542#0 ------------------------------------------------------------ consensus_6542#2 GTGGTGGATGTGGATCTCGTCCCCACTACTCCACCGCGCCTCTCGCTTCCTCCGTCCCCA 60 consensus_6542#1 ------------------------------------------------------------ consensus_6542#3 ------------------------------------------------------------ consensus_6542#0 ------------------------------------------------------------ consensus_6542#2 GCCGCGCCGCTCGCTGCCTCCGTTTACAGCCGTGACGCTCGCTAGTCGCTACCTCCACCC 120 consensus_6542#1 ------------------------------------------------------------ consensus_6542#3 ------------------------------------------------------------ consensus_6542#0 ------------------------------------------------------------ consensus_6542#2 CAGCCGCGTCGCTCACTGTTTTCCTCCACCGCCGCAGTCTCTGTCCCCACCCGCGCCGCT 180 consensus_6542#1 ---------------------------------------------------------TGA 3 consensus_6542#3 ------------------------------------------------------------ consensus_6542#0 --------------------CTGATCCATTCCC--CCCACCCCGCCTA----TTGATTGA 34 consensus_6542#2 CGTTGATCCACGTTTGGGGGCGGATCCGAGTCGGATTCACTCTCGATT----TCGATCGG 236 consensus_6542#1 GGAGGATGCCCTGCTCGCATTGCTTCCATGCGACCTGCATCTTGGATTGGCTCCGCCTCA 63 consensus_6542#3 ------------------------------------------------------------ consensus_6542#0 TCTGCTCGCCTCCGCCATTGTCGTTGTCGATCTCTTCTGAAGGGTGAGCGCCGGCTGCGG 94 consensus_6542#2 GACGCGGAGTCCGATCGATTTCTTCGTCTATAAACTCTGCAGGGGACGTACGGTGAGCGC 296 consensus_6542#1 GCCATCGCTGCCCGCTCTGCAGATTCCCGATGCCAACCCAAGACCAATCTTACTAGGCTG 123 consensus_6542#3 ------------------------------------TTTTTATCTGAATTTTTTTTATTT 24 consensus_6542#0 CAGGGAGGCGTGTGTTGCTGCCGCAGATCGATGGAGGTGGATGCCTCC-GCGGTCGCAAG 153 consensus_6542#2 CTCCG--GCGTGTGTTGCTGCCGCAGATCGATGGAGGTGGATGCCTCC-GCGGTCGCAAG 353 consensus_6542#1 TAAGAGGATA-ACGCCGCGGCCAGAGATGAAACAAATCATACAACTCTTGTGCGTACTCA 182 consensus_6542#3 CTAG--------TTTTCCTGCGAGTCCCTTATGGAATATTCCGTCTCCAGTTCTCCCATG 76 * ** * * *** * * consensus_6542#0 AGCACTACCAAGAGATTTCCCTCCCATCGAGAACTTGAGCTTCGAAGGCTTCCCCCGTTA 213 consensus_6542#2 AGCACTACCAAGAGATTTCCCTCCCATCGAGAACTTGAGCTTCGAAGGCATCCCCCGTTA 413 consensus_6542#1 TGCTCCATCAAACACCATTCCATTCATGTACCATCTGTTATT---ATTCATGTTTTATGA 239 consensus_6542#3 AATCCCTTATGGAAATTTGT-----ATCGAAATGTTGAAATTTACATAGTTATATACTTC 131 * * ** * ** ** * * * consensus_6542#0 TACTTTCAAGATCGGCAACCGGATCCACTGCACCAACTTGATGTATCGCCCAGGTAGTCG 273 consensus_6542#2 TACTTTCAAGATTGGCAACCGGATCCACTGCACCAACTTGATGTACCGCCCAGGTAGTCG 473 consensus_6542#1 TCGGATTGCTATTGTTTCGGGGTATTACAGTGCCAACATTGGGATTCCCCTCGAAAGATG 299 consensus_6542#3 TGCTTTCTTGATCTTCAATTCAAAGT-CTGTAATAGCTCTTTGCATTATCCTTCTTTTTC 190 * * ** * * * * * * consensus_6542#0 GACGCTATTAACGCAGGAAGAAGCTCATGAGATCATTCGCGAG-GGCTTGAGG-TCTGAC 331 consensus_6542#2 GACGCTATTAACGCAGGAAGAAGCTCATGAGATCATTCGCGAG-CGCTTGAGG-TCTGAC 531 consensus_6542#1 AACA-TACTTTCCCGCTAAAAGCTTCCTCTAGTTCTTCCCAGCTCGCTTGCTTCTCTTGC 358 consensus_6542#3 TCTGTTGTTCTCA----------TTCTTGT--TTCTGCGCAAA-----TATGTTCATAGT 233 * * * ** * * * * * * * consensus_6542#0 ATTCGTCGGGGCCGCATACAACTGAACGCCGACTTCTTGCAGCAGCTTGTTGATCAGGTT 391 consensus_6542#2 ATTCGTCGGGGCCGCATAGAACTGGA---------------------------------- 557 consensus_6542#1 AGTAGAAGCTTCATCCTCTACCAAAGAAAGCTCCTTGCACTCCTCATTGGCGTTCATGTC 418 consensus_6542#3 ACAAGTCTGCTCCTCCT-TATACGAAGGTGTTCCTACCTCTGTTACT--ATGTCTGAATT 290 * * * * * * consensus_6542#0 CGCGATCATATTCTTCAGCGTCAGCGCCGTGGCACTGC--CACTGCCATGGATGGAGTAG 449 consensus_6542#2 ------------------------------------------------------------ consensus_6542#1 CTGGAGCCCGAGGACAGCCATTACCACAGCGACATCACGACATCGCCATGTATGAGCTGT 478 consensus_6542#3 TTC---TTCTTTTCTGAACATTATGGCGATGTCGTGATGTCGCTGTGGTAATGGCTGTCC 347 consensus_6542#0 TGGAGGTGGAGGATGCGTACAGGAACGGTGGGTTCGGCGCTATCCCCGCGTCGAGCAAGG 509 consensus_6542#2 ------------------------------------------------------------ consensus_6542#1 TGGAATATAAACATGTAATCTTGAGCA-TCGATTCATCTGTTTGCTTGCATGTAGTTAGC 537 consensus_6542#3 TCGGGCTCCAGGACATGAACGCCAATGAGGAGTGCAAGGAGCTTTCTTTGGTAGAGGATG 407 consensus_6542#0 CCATGGCCGAGCTGCAGGAGGCGATGGCAAGCGACGCCAGGGAACGCGGGTGCGCTGTGT 569 consensus_6542#2 ------------------------------------------------------------ consensus_6542#1 CGGCTGGAAACACTTTGGATTCGGCCGAAAGAATAGTTCTTTTAAGGGTTACATGTTTCC 597 consensus_6542#3 AAGCTTCTA--CTGCAAGAGA----AGCAAGCGA-GCTGGGAAGAACTAGAGGAAGCTTT 460 consensus_6542#0 GCCTGGAGGATTTCGAGGCGGGAGAGAAGCTGACGAGGATGCCCTGCTCGCATTGCTTCC 629 consensus_6542#2 ------------------------------------------------------------ consensus_6542#1 TGGTTTATAGTTGCGATGACCCGGGTCAGATCGTATTGAATTTGAACTTGCATGTTTGNG 657 consensus_6542#3 TAGCGGGAAAGTATGTTCATCTTTCGAGGGGAATCCCAATGTTGGCACTGTAATACCCCG 520 consensus_6542#0 ATGCGACCTGCATCTCGGATTGGCTCCGCCTCAGCCATCGTTGCCCGCTCTGCAGATTCC 689 consensus_6542#2 ------------------------------------------------------------ consensus_6542#1 GAATGATATATTA----------------------------------------------- 670 consensus_6542#3 AAACAATAGCAATCCGATCATAA------------------------------------- 543 consensus_6542#0 CGATGCCAACCCAAGACCAATCTTACTAGGCTGTAAGAGGATAACGCCGCGGCCAGAGAT 749 consensus_6542#2 ------------------------------------------------------------ consensus_6542#1 ------------------------------------------------------------ consensus_6542#3 ------------------------------------------------------------ consensus_6542#0 GAAACAAATCATACAACTCTTGTGCTTACTCATGCTCCATCAAACACCATTCCTTTCATG 809 consensus_6542#2 ------------------------------------------------------------ consensus_6542#1 ------------------------------------------------------------ consensus_6542#3 ------------------------------------------------------------ consensus_6542#0 TACCATCTGTCATTTATGATCGAATAACTAATCATATGC 848 consensus_6542#2 --------------------------------------- consensus_6542#1 --------------------------------------- consensus_6542#3 --------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||