cluster # 6546

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Oryza sativa
cluster # 6546 cluster # 6546 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6546#0 length = 1111 sequences # 3

consensus_6546#1 length = 670 sequences # 1

consensusID : consensus_6546#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1111
fasta sequence

                              [AAGAAAAGATCACTCACTCCAGCTCGTGAAAGATCACGCGCGAAAAGCAGCATCTCCTCCTCCGACGAGCATTGATCTGATCGAGCGCGCGTCGATCGTCGGAGAGGATGGCCGGCAAGGTGGCTGCGCCGCTCGCGTTCCGCCGCGACGTCGTCGTGCGTGGCACGCTCGGCGGCGGCCGGAGGAGCGGGGTGTCCGGGCTGTGGAGCAATGGCGGCGGCGGCGGGGGGCGGCTCGTGGCGCCGCCGTCGGCGCCGTGGCCGGCGCGGGCGCGCGGCAAGAACCGGTCCGGCGGCGGCGGGCGGAGCGCGACCAAGGACGACGAGCGCGCGGGGAAGGATGAGGCGGCGGAGGCCGTGGTGTTCGTCGACGGGGAGGACGACGAGGCGGCGATCGACGGCGACGATCTGTCCGGGTTCAGGGGCCTGGTTCTTGATCTCTCTTATAGGCCTGTGAACGTTGTCTGCTGGAAGCGTGCAATTTGCTTGGAATTCATGGCGAAGGCCGATGTATTGGAGTACTATGACCAGACTGTCTCCTCACCCAGTGGATCATTCTACATCCCTGCAGTTCTCAGGGTTCCAGAGCTGCTGCAGGTTGTAAAGCGAAGAAGAGTTAAGCACAGCCTTAGCCGTAAAAACATTCTTTACAGGGATGGATTTACTTGCCAGTATTGTTCTTCTGTTGATAACCTAACGATTGATCATGTCATTCCGACTGCACGTGGCGGAAAATGGGAATGGGAAAATCTGGTGACTGCATGCTCAAGATGCAACTCCAGGAAAGGCCAGAAGACAGTGGAGCAAGCAAACATGAAGCTACTCAAGGTCCCCAAGGCGCCAAAGGAATTTGACATT-CTTGCAGTACCCTTGACAAAAGCTGCATTCAGGACGCTCAAGAGGAGCCAAGGGTTGCCTGA-AGAATGGCTGCAATACTTGGCCAGGCCATCTCCATGAACACCAGCTCCAGAAATTA-GTGGCCATCTGTCAATGTATATATATTAACTAGGCTATTCTTCAGCCCAAGATTCACCTGTGCGCATCAGAAACTCTGTACATGCCTGACTCAGTAAAATAAAACAAGATTCTGACTATAGTACAAAAAAAAAAGA]

[+] EMBL CB656314             [AAGAAAAGATCACTCACTCCAGCTCGTGAAAGATCACGCGCGAAAAGCAGCATCTCCTCCTCCGACGAGCATTGATCTGATCGAGCGCGCGTCGATCGTCGGAGAGGATGGCCGGCAAGGTGGCTGCGCCGCTCGCGTTCCGCCGCGACGTCGTCGTGCGTGGCACGCTCGGCGGCGGCCGGAGGAGCGGGGTGTCCGGGCTGTGGAGCAATGGCGGCGGCGGCGGGGGGCGGCTCGTGGCGCCGCCGTCGGCGCCGTGGCCGGCGCGGGCGCGCGGCAAGAACCGGTCCGGCGGCGGCGGGCGGAGCGCGACCAAGGACGACGAGCGCGCGGGGAAGGATGAGGCGGCGGAGGCCGTGGTGTTCGTCGACGGGGAGGACGACGAGGCGGCGATCGACGGCGACGATCTGTCCGGGTTCAGGGGCCTGGTTCTTGATCTCTCTTATAGGCCTGTGAACGTTGTCTGCTGGAAGCGTGCAATTTGCTTGGAATTCATGGCGAAGGCCGATGTATTGGAGTACTATGACCAGACTGTCTCCTCACCCAGTGGATCATTCTACATCCCTGCAGTTCTCAGGGTTCCAGAGCTGCTGCAGGTTGTAAAGCGAAGAAGAGTTAAGCACAGCCTTAGCCGTAAAAACATTCTTTACAGGGATGGATTTACTTGCCAGTATTGTTCTTCTGTTGATAACCTAACGATTGATCATGTCATTCCGACTGCACGTGGCGGAAAATGGGAATGGGAAAATCTGGTGACTGCATGCTCAAGATGCAACTCCAGGAAAGGCCAGAAGACAGTGGAGCAAGCAAACA                                                                                                                                                                                                                                                                                                             ]
[-] EMBL CB656315             [                                                                                                                                                                                                                                                                                                                                       GCGCGGGGAAGGATGAGGCGGCGGAGGCCGTGGTGTTCGTCGACGGGGAGGACGACGAGGCGGCGATCGACGGCGACGATCTGTCCGGGTTCAGGGGCCTGGTTCTTGATCTCTCTTATAGGCCTGTGAACGTTGTCTGCTGGAAGCGTGCAATTTGCTTGGAATTCATGGCGAAGGCCGATGTATTGGAGTACTATGACCAGACTGTCTCCTCACCCAGTGGATCATTCTACATCCCTGCAGTTCTCAGGGTTCCAGAGCTGCTGCAGGTTGTAAAGCGAAGAAGAGTTAAGCACAGCCTTAGCCGTAAAAACATTCTTTACAGGGATGGATTTACTTGCCAGTATTGTTCTTCTGTTGATAACCTAACGATTGATCATGTCATTCCGACTGCACGTGGCGGAAAATGGGAATGGGAAAATCTGGTGACTGCATGCTCAAGATGCAACTCCAGGAAGGGCCAGAAGACAGTGGAGCAAGCAAACATGAAGCTACTCAAGGTCCCCAAGGCGCCAAAGGAATTTGACATT CTTGCAGTACCCTTGACAAAAGCTGCATTCAGGACGCTCAAGAGGAGCCAAGGGTTGCCTGA AGAATGGCTGCAATACTTGGCCAGGCCATCTCCATGAACACCAGCTCCAGAAATTA GTGGCCATCTGTCAATGTATATATATTAACTAGGCTATTCTTCAGCCCAAGATTCACCTGTGCGCATCAGAAACTCTGTACATGCCTGACTCAGTAAAATAAAACAAGATTCTGACTATAGTACAAAAAAAAAAGA]
[+] EMBL BQ907800             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CAAGGCGCCAAAGGAATTTGACATTGCTTGCAGTACCCTGGAC AAAGCTGCATTCAGGACGCTCAAGAGGAGCCAAGGGTTGCCTGATAGAATGGCTGCAATACTTGGCCAGGCCATCTCCATGAACACCAGCTCCAGAAATTAGGTGGCCATCGGGCAAGGTATATATATTAANTAGGCTATTCTTCAGCCCAAGANTCACCNGTGCGCATCAGAAACNCTGTACATGCCGGACTCAGTAAAATAAAACAAGATTCGGAC                    ]




>consensus_6546#0
AAGAAAAGATCACTCACTCCAGCTCGTGAAAGATCACGCGCGAAAAGCAGCATCTCCTCC
TCCGACGAGCATTGATCTGATCGAGCGCGCGTCGATCGTCGGAGAGGATGGCCGGCAAGG
TGGCTGCGCCGCTCGCGTTCCGCCGCGACGTCGTCGTGCGTGGCACGCTCGGCGGCGGCC
GGAGGAGCGGGGTGTCCGGGCTGTGGAGCAATGGCGGCGGCGGCGGGGGGCGGCTCGTGG
CGCCGCCGTCGGCGCCGTGGCCGGCGCGGGCGCGCGGCAAGAACCGGTCCGGCGGCGGCG
GGCGGAGCGCGACCAAGGACGACGAGCGCGCGGGGAAGGATGAGGCGGCGGAGGCCGTGG
TGTTCGTCGACGGGGAGGACGACGAGGCGGCGATCGACGGCGACGATCTGTCCGGGTTCA
GGGGCCTGGTTCTTGATCTCTCTTATAGGCCTGTGAACGTTGTCTGCTGGAAGCGTGCAA
TTTGCTTGGAATTCATGGCGAAGGCCGATGTATTGGAGTACTATGACCAGACTGTCTCCT
CACCCAGTGGATCATTCTACATCCCTGCAGTTCTCAGGGTTCCAGAGCTGCTGCAGGTTG
TAAAGCGAAGAAGAGTTAAGCACAGCCTTAGCCGTAAAAACATTCTTTACAGGGATGGAT
TTACTTGCCAGTATTGTTCTTCTGTTGATAACCTAACGATTGATCATGTCATTCCGACTG
CACGTGGCGGAAAATGGGAATGGGAAAATCTGGTGACTGCATGCTCAAGATGCAACTCCA
GGAAAGGCCAGAAGACAGTGGAGCAAGCAAACATGAAGCTACTCAAGGTCCCCAAGGCGC
CAAAGGAATTTGACATTCTTGCAGTACCCTTGACAAAAGCTGCATTCAGGACGCTCAAGA
GGAGCCAAGGGTTGCCTGAAGAATGGCTGCAATACTTGGCCAGGCCATCTCCATGAACAC
CAGCTCCAGAAATTAGTGGCCATCTGTCAATGTATATATATTAACTAGGCTATTCTTCAG
CCCAAGATTCACCTGTGCGCATCAGAAACTCTGTACATGCCTGACTCAGTAAAATAAAAC
AAGATTCTGACTATAGTACAAAAAAAAAAGA

consensusID : consensus_6546#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 670
fasta sequence

                              [CTGTCTCCTCACCCAGTGGATCATTCTACATCCCTGCAGTTCTCAGGGTTCCAGAGCTGCTGCAGGTTGTAAAGCGAAGAAGAGTTAAGCACAGCCTTAGCCGTAAAAACATTCTTTACAGGGATGGATTTACTTGCCAGTAAGTATTGTATTGCATTGCATTGTTACAATAAGTTTGATTTCCACTTGTGTGAAGTCAAGCAAAGTTCTGATCATACGGTTTTTTAGCCTACAGTTTTCCCTTGGCATCTCACTCAATTTTCAGAAACTTTTTTAAAAATTTCATTCACGAACCAGCTGATTAGTGATTATACCATCTGCAGGTATTGTTCTTCTGTTGATAACCTAACGATTGATCATGTCATTCCGACTGCACGTGGCGGAAAATGGGAATGGGAAAATCTGGTCTGAATCCTAAATATTTCTATACTCTCCTTGTGCTAATGAACAAGTTATCAGTTGATCACCAGAATAAACAATGTTCACTCGAACAACAACAAAAAAAGGCAGTTTAATTTGGTGTTTTGCTAATCTTTTGAACTGCCTAGGTGACTGCATGCTCAAGATGCAACTCCAGGAAGGGCCAGAAGACAGTGGGAGCAAGCAAACATGAAGCTACTTCAAGGGTCCCCAAAGGCGCCAAAGGAATTTGACATTCCTTGCAGTACCT]

[+] EMBL CA752863             [CTGTCTCCTCACCCAGTGGATCATTCTACATCCCTGCAGTTCTCAGGGTTCCAGAGCTGCTGCAGGTTGTAAAGCGAAGAAGAGTTAAGCACAGCCTTAGCCGTAAAAACATTCTTTACAGGGATGGATTTACTTGCCAGTAAGTATTGTATTGCATTGCATTGTTACAATAAGTTTGATTTCCACTTGTGTGAAGTCAAGCAAAGTTCTGATCATACGGTTTTTTAGCCTACAGTTTTCCCTTGGCATCTCACTCAATTTTCAGAAACTTTTTTAAAAATTTCATTCACGAACCAGCTGATTAGTGATTATACCATCTGCAGGTATTGTTCTTCTGTTGATAACCTAACGATTGATCATGTCATTCCGACTGCACGTGGCGGAAAATGGGAATGGGAAAATCTGGTCTGAATCCTAAATATTTCTATACTCTCCTTGTGCTAATGAACAAGTTATCAGTTGATCACCAGAATAAACAATGTTCACTCGAACAACAACAAAAAAAGGCAGTTTAATTTGGTGTTTTGCTAATCTTTTGAACTGCCTAGGTGACTGCATGCTCAAGATGCAACTCCAGGAAGGGCCAGAAGACAGTGGGAGCAAGCAAACATGAAGCTACTTCAAGGGTCCCCAAAGGCGCCAAAGGAATTTGACATTCCTTGCAGTACCT]




>consensus_6546#1
CTGTCTCCTCACCCAGTGGATCATTCTACATCCCTGCAGTTCTCAGGGTTCCAGAGCTGC
TGCAGGTTGTAAAGCGAAGAAGAGTTAAGCACAGCCTTAGCCGTAAAAACATTCTTTACA
GGGATGGATTTACTTGCCAGTAAGTATTGTATTGCATTGCATTGTTACAATAAGTTTGAT
TTCCACTTGTGTGAAGTCAAGCAAAGTTCTGATCATACGGTTTTTTAGCCTACAGTTTTC
CCTTGGCATCTCACTCAATTTTCAGAAACTTTTTTAAAAATTTCATTCACGAACCAGCTG
ATTAGTGATTATACCATCTGCAGGTATTGTTCTTCTGTTGATAACCTAACGATTGATCAT
GTCATTCCGACTGCACGTGGCGGAAAATGGGAATGGGAAAATCTGGTCTGAATCCTAAAT
ATTTCTATACTCTCCTTGTGCTAATGAACAAGTTATCAGTTGATCACCAGAATAAACAAT
GTTCACTCGAACAACAACAAAAAAAGGCAGTTTAATTTGGTGTTTTGCTAATCTTTTGAA
CTGCCTAGGTGACTGCATGCTCAAGATGCAACTCCAGGAAGGGCCAGAAGACAGTGGGAG
CAAGCAAACATGAAGCTACTTCAAGGGTCCCCAAAGGCGCCAAAGGAATTTGACATTCCT
TGCAGTACCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6546#0      AAGAAAAGATCACTCACTCCAGCTCGTGAAAGATCACGCGCGAAAAGCAGCATCTCCTCC 60
consensus_6546#1      ------------------------------------------------------------
                                                                                  

consensus_6546#0      TCCGACGAGCATTGATCTGATCGAGCGCGCGTCGATCGTCGGAGAGGATGGCCGGCAAGG 120
consensus_6546#1      ------------------------------------------------------------
                                                                                  

consensus_6546#0      TGGCTGCGCCGCTCGCGTTCCGCCGCGACGTCGTCGTGCGTGGCACGCTCGGCGGCGGCC 180
consensus_6546#1      ------------------------------------------------------------
                                                                                  

consensus_6546#0      GGAGGAGCGGGGTGTCCGGGCTGTGGAGCAATGGCGGCGGCGGCGGGGGGCGGCTCGTGG 240
consensus_6546#1      ------------------------------------------------------------
                                                                                  

consensus_6546#0      CGCCGCCGTCGGCGCCGTGGCCGGCGCGGGCGCGCGGCAAGAACCGGTCCGGCGGCGGCG 300
consensus_6546#1      ------------------------------------------------------------
                                                                                  

consensus_6546#0      GGCGGAGCGCGACCAAGGACGACGAGCGCGCGGGGAAGGATGAGGCGGCGGAGGCCGTGG 360
consensus_6546#1      ------------------------------------------------------CTGTCT 6
                                                                            * **  

consensus_6546#0      TGTTCGTCGACGGGGAGGACGACGAGGCGGCGATCGACGGCGAC---GATCTGTC-CGGG 416
consensus_6546#1      CCTCACCCAGTGGATCATTCTACATCCCTGCAGTTCTCAGGGTTCCAGAGCTGCTGCAGG 66
                        *    *   **      * **    * **  *   * * *     ** ***   * **

consensus_6546#0      TTCAGGGGCCTGGTTC--TTGATCTCTCTTATAGGCCTGTGAACGTTGTCTGCTGGAAGC 474
consensus_6546#1      TTGTAAAGCGAAGAAGAGTTAAGCACAGCCTTAGCCGTAAAAACATTCTTTACAGGGATG 126
                      **     **   *     ** * * *     *** * *   *** ** * * * ** *  

consensus_6546#0      GTGCAATTTGCTTGGAATTCATGGCGAAGGCCGATGTATTGGAGTACTATGACCAGACTG 534
consensus_6546#1      GATTTACTTGCCAGTAA---GTATTGTATTGCATTGCATTGTTACAATAAGTTTGATTTC 183
                      *    * ****  * **    *   * *   *  ** ****    * ** *       * 

consensus_6546#0      TCTCCTCACCCAGTGGATCATTCTAC-ATCCCTGCAGTTCTCAGGGTTCCAGAGCTGCTG 593
consensus_6546#1      CACTTGTGTGAAGTCAAGCAAAGTTCTGATCATACGGTTTTTTAGCCTACAGTTTTCCCT 243
                                 ***  * **   * *    * * * *** *   *  * ***   * *  

consensus_6546#0      CAGGTTGTAAAGCGA-----AGAAGAGTTAAGCACAGCCTTAGCCGTAAAAACATTCTTT 648
consensus_6546#1      TGGCATCTCACTCAATTTTCAGAAACTTTTTTAAAAATTTCATTCACGAACCAGCTGATT 303
                        *  * * *  * *     ****   **    * *   * *  *   **     *  **

consensus_6546#0      ACAGGGATGGATTTACTTGCCAGTATTGTTCTTCTGTTGATAACCTAACGATTGATCATG 708
consensus_6546#1      --AGTGATTATACCATCTGCAGGTATTGTTCTTCTGTTGATAACCTAACGATTGATCATG 361
                        ** ***      *  ***  **************************************

consensus_6546#0      TCATTCCGACTGCACGTGGCGGAAAATGGGAATGGGAAAATCTGGTGACTGCATGCTCAA 768
consensus_6546#1      TCATTCCGACTGCACGTGGCGGAAAATGGGAATGGGAAAATCTGGT--CTGAATCCTAAA 419
                      **********************************************  *** ** ** **

consensus_6546#0      GATGCAACTCCAGGAAAGGCCAGAAGACAGTGGAGCAAGCAAACATGAAGCTACTCAAGG 828
consensus_6546#1      TATTT--------------CTATACTCTCCTTGTGCTAATGAACAAGTTATCAGTTGA-- 463
                       **                * * *      * * ** *   **** *     * *  *  

consensus_6546#0      TCCCCAAGGCGCCAAAGGAATTTGACATTCTTGCAGTACCCTTGACAAAAGCTGCATTCA 888
consensus_6546#1      TCACCAGAAT----AAACAATGTT-CACTCGAACAACAACAAAAAAAGGCAGTTTAATTT 518
                      ** ***        **  *** *  ** **   **  * *    * *     *  * *  

consensus_6546#0      GGACGCTCAAGAGGAGCCAAGGGTTGCCTGAAGAATGGCTGCAATACTTGGCCAGGCCAT 948
consensus_6546#1      GG-TGTTTTGCTAATCTTTTGAACTGCCTAGG---TGACTGCA-TGCTCAA--GATGCAA 571
                      **  * *             *   *****      ** ***** * **         ** 

consensus_6546#0      CTCCATGAACACCAGCTCCAGAAATTAGTGGCCATCTGTCAATGTATATATATTAACTAG 1008
consensus_6546#1      CTCCAGGAA-----GGGCCAGAAGACAGTGGGAGCAAGCAAACATGAAGCTACTT-CAAG 625
                      ***** ***     *  ******   *****      *  **  *  *  ** *  * **

consensus_6546#0      GCTATTCTTCAGCCCAAGATTCACCTGTGCGCATCAGAAACTCTGTACA-TGCCTGACTC 1067
consensus_6546#1      GGT---------CCCCAAAGGCGCCAAAG-GAATTTGACATTCCTTGCAGTACCT----- 670
                      * *         *** * *  * **   * * **  ** * **  * ** * ***     

consensus_6546#0      AGTAAAATAAAACAAGATTCTGACTATAGTACAAAAAAAAAAGA 1111
consensus_6546#1      --------------------------------------------