These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6558#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 187 fasta sequence [GATACGCTACGTAACGTCATGACAGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCCAAAAAATCCAAAAACTTTCAAAAACACTAAGTCAATAGTCACATCCCGATTCCACTGGGAATCGAATCAATCACACTTTGCCCCCCTAAATTTCTACTCCTTCAGCCCAT] [+] EMBL CF298431 [GATACGCTACGTAACGTCATGACAGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCCAAAAAATCCAAAAACTTTCAAAAACACTAAGTCAATAGTCACATCCCGATTCCACTGGGAATCGAATCAATCACACTTTGCCCCCCTAAATTTCTACTCCTTCAGCCCAT] [+] EMBL CF298358 [GATACGCTACGTAACGTCATGACAGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCCAAAAAATCCAAAAACTTTCAAAAACCCTAAGTCAATAGTCACATCCCGATTCCACTGGGAATCAAATAAATCACACTTTGCCCCCCTAAATTTCTACTCCTTCAGCCCAT] [-] EMBL CF298359 [ TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCAAGAAATCCAAAAACATTCAAGAACACTAAGTCAATAGTCACATACCGATTCCACTGGG ATCGAATCAATCA ] consensusID : consensus_6558#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 125 fasta sequence [TCGGTATGTGACTATTGACTTAGTGTTCTTGAATGTTTTTGGATTTCTTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGCCATAACTTTTTTTTTCGTAT] [+] EMBL CF298432 [TCGGTATGTGACTATTGACTTAGTGTTCTTGAATGTTTTTGGATTTCTTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGCCATAACTTTTTTTTTCGTAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6558#0 GATACGCTACGTAACGTCATGACAGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 60 consensus_6558#1 ----------------------------TCGGTATGTGACTATTGACTTAGTGTTCTTGA 32 * * * * * ** ** * ** ** consensus_6558#0 TTTTTTTTTTTTTTCCCAAAAAATCCAAAAACTTTCAAAAACACTAAGTCAATAGTCACA 120 consensus_6558#1 ATGTTTTTGGATTTCTTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 92 * ***** **** **** ***** ***** * ** ** * * * consensus_6558#0 TCCCGATTCCACTGGGAATCGAATCAATCACACTTTGCCCCCCTAAATTTCTACTCCTTC 180 consensus_6558#1 AAAAAACCCCTGCCATAACTTTTTTTTTCGTAT--------------------------- 125 * ** ** * ** * consensus_6558#0 AGCCCAT 187 consensus_6558#1 ------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||