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Oryza sativa
cluster # 6561 cluster # 6561       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6561#0 length = 1313 sequences # 3  
consensus_6561#1 length = 435 sequences # 1  

consensusID : consensus_6561#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1313
fasta sequence
                              [CCTTCTCCCTTCCTCGCTCCCCGTCCCCCGACTCGCCGCCGGCCGCGCCACCGGAGAATCCAAACCCTCGCCGCCGCCGACGCCGCCGCCCGGCCGCGCAGAGCTCTGATTCCGCGGAATCCCTGCGCGCCTTCGCGAGATTCCCTCGGGTTTGGGCGGGACCGTCGTCCCCTGGCCTGAGGGGGGGTTGCCGAGTTGGCGGCGGCGGTGGCAGGCGGCGAGATGGGGGCGAACGCCGACCCCACGGGGGTGCTTCTGGGCGGGCCCCACCACCGCAACCCTTCCCCCGCGCCGGCGCTGGCCCAGCCGCCGGGCGCGAGCACCGCGGCGGCGCTGCGCCACGACCCGGGGCTCTCCGTCCGGTGGACGCCCGAGGAGCAGGCCGTGCTCGAAGGAGGGCTGGCCAGCTATGCGGCGGATGCAGCTGTAGTTCGCTATGCAAAAATTGCTATGAATCTGCCTGACAAGACAGTGCGAGATGTGGCCCTGCGTTGCAGATGGATGGCTAAAAAGGAGAGTAACAAGAAAAGGAAGGAAGAGTCATCTAAGAAAAACAAAGAAAAGAAGGAGAGAGCCAATGATTCTTCATCAAAAGGGCCAGCTCACCTAGTGGCCCGACCTAATGCTGCTCCATATTCTCTTCCAGTTCTTCCCATGGATGATGATGATGTGTCATACAAAACAATTGGAGGCCAAACTGGTCAAATTCTTGAGCACAATGCACAGATCTTGAACCAGATCTATACCAATATTTCAAACATGCAGGTGCAGGAGAACATCCCTCTTTTATGTCAAACTAGGGATAATATACTTGCAGTCCTGAAGGA---GATAGGCGATGTTCCTGAGATAATGAGGCAGATGCCACCCCTTCCTGTAAAGTTGAATGAAGAACTGGCTAACTCTATGTTGCCGAGGCCTCCACATACATGATATGTGCAACAGTTTGCTCAACCAAATCAATTGCGCATGAAGATCAGTTTAGATAGATGGGTTATTTGCATATGCTTTGTCGCTATAGATTCCAGATGTCTGATTGTGCTGTCCAGATCTTAAATCCAGCCATGTAAC-ATTCTATACCTTGGTTCTATTTGTTCAGCTGATAGTAGGTGCTCCGTGTAC-AAGCCAGCAGTTTCAGTGAAACAAGTTCGTAGCCCTCTAGTCCTTGTAGAAAAAAAACATAGGGGTTAAACTTCTGTACAGTGTCGAAAGAAATAGCATCTTTTCTGTTTCAGTTATGTTTAGAACTGGCATTCAGCCCAATCTTACATGTTCGGACATGATATAATACCACCAAACTTCTTAATTTGCCAAAA]

[+] EMBL AK064721             [CCTTCTCCCTTCCTCGCTCCCCGTCCCCCGACTCGCCGCCGGCCGCGCCACCGGAGAATCCAAACCCTCGCCGCCGCCGACGCCGCCGCCCGGCCGCGCAGAGCTCTGATTCCGCGGAATCCCTGCGCGCCTTCGCGAGATTCCCTCGGGTTTGGGCGGGACCGTCGTCCCCTGGCCTGAGGGGGGGTTGCCGAGTTGGCGGCGGCGGTGGCAGGCGGCGAGATGGGGGCGAACGCCGACCCCACGGGGGTGCTTCTGGGCGGGCCCCACCACCGCAACCCTTCCCCCGCGCCGGCGCTGGCCCAGCCGCCGGGCGCGAGCACCGCGGCGGCGCTGCGCCACGACCCGGGGCTCTCCGTCCGGTGGACGCCCGAGGAGCAGGCCGTGCTCGAAGGAGGGCTGGCCAGCTATGCGGCGGATGCAGCTGTAGTTCGCTATGCAAAAATTGCTATGAATCTGCCTGACAAGACAGTGCGAGATGTGGCCCTGCGTTGCAGATGGATGGCTAAAAAGGAGAGTAACAAGAAAAGGAAGGAAGAGTCATCTAAGAAAAACAAAGAAAAGAAGGAGAGAGCCAATGATTCTTCATCAAAAGGGCCAGCTCACCTAGTGGCCCGACCTAATGCTGCTCCATATTCTCTTCCAGTTCTTCCCATGGATGATGATGATGTGTCATACAAAACAATTGGAGGCCAAACTGGTCAAATTCTTGAGCACAATGCACAGATCTTGAACCAGATCTATACCAATATTTCAAACATGCAGGTGCAGGAGAACATCCCTCTTTTATGTCAAACTAGGGATAATATACTTGCAGTCCTGAAGGA   GATAGGCGATGTTCCTGAGATAATGAGGCAGATGCCACCCCTTCCTGTAAAGTTGAATGAAGAACTGGCTAACTCTATGTTGCCGAGGCCTCCACATACATGATATGTGCAACAGTTTGCTCAACCAAATCAATTGTGCATGAAGATCAGTTTAGATAGATGGGTTATTTGCATATGCTTTGTCGCTATAGATTCCAGATGTCTGATTGTGCTGTCCAGATCTTAAATCCAGCCATGTAACAATTCTATACCTTGGTTCTATTTGTTCAGCTGATAGTAGGTGCTCCGTGTACAAAGCCAGCAGTTTCAGTGAAACAAGTTCGTAGCCCTCTAGTCCTTGTAGAAAAAAAACATAGGGGTT AACTTCTGTACAGTGTCGAAAGAAATAGCATCTTTTCTGTTTCAGTTATGTTTAGAACTGGCATTCAGCCCAATCTTACATGTTCGGACATGATATAATACaagc                     ]
[+] EMBL BI805607             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        AGCACAA GCACAGATCTTG ACCAGATCTATACC ATATTTC AACAT CAGGTGCAGGAG ACATCCCTCTTTTATGTC AACTAGGGATAATATACTNGCAGTCCTGAAGGACAGGATAGGCGATGTTCCTGAGATAATGA GCAGATGCCACCCCTTCCTGTAAAGTTGAATGAAGAACTGGCTAACTCTATGTTGCCGAGGCCTCCACATACATGATATGNGCAACAGTTTGCTCAACC AATCAATTGCGCATGAAGATCAGTTTAGATAGATGGGTTATTTGCATATGCTTTGTCGCTATAGATTCCAGATGTCTGATTGTGCTGTCCAGATCTTAAATCCAGCCATGTAAC ATTCTATACCTTGGTTCTATTTGTTCAGCTGATAGTAGGTGCTCCGTGTAC AAGCCAGCAGTTTCAGTGAAACAAGTTCGTAGCCCTCTAGTCCTTGTAGAAAAAAAACATAGGGGTTAAACTTCTGTACAGTGTCGAAAGAAATAGCATCTTTTCTGTTTCAGTTATGTTTAGAACTGGCATTCAGCCCAATCTTACATGTTC GACATGATATAATACCACCAAACTTCTTAATTTGCCAAAA]
[+] EMBL BI806075             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 AATTGCGCATGAAGATCAGTTTAGATAGATGGGTTATTTGCATATGCTTTGTCGCTATAGATTCCAGATGTCTGATTGTGCTGTCCAGATCTTAAATCCAGCCATGTAAC ATTCTATACCTTGGTTCTATTTGTTCAGCTGATAGTAGGTGCTCCGTGTAC AAGCCA CAGTTTCAGTGAAACAAGTTCGTAGCCCTCTAGTCCTTGTAGAAAAAAAACATAGGGGTTAAACTTCTGTACAGTGTCGAAAGAAATAGCATCTTTTCTGTTTCAGTTATGTTTAGAACTGGCATTCAGCCCCATCTTACATGTTCGGACATGATATAATACCACCAAACTTCTTAAaaaa      ]


>consensus_6561#0 CCTTCTCCCTTCCTCGCTCCCCGTCCCCCGACTCGCCGCCGGCCGCGCCACCGGAGAATC CAAACCCTCGCCGCCGCCGACGCCGCCGCCCGGCCGCGCAGAGCTCTGATTCCGCGGAAT CCCTGCGCGCCTTCGCGAGATTCCCTCGGGTTTGGGCGGGACCGTCGTCCCCTGGCCTGA GGGGGGGTTGCCGAGTTGGCGGCGGCGGTGGCAGGCGGCGAGATGGGGGCGAACGCCGAC CCCACGGGGGTGCTTCTGGGCGGGCCCCACCACCGCAACCCTTCCCCCGCGCCGGCGCTG GCCCAGCCGCCGGGCGCGAGCACCGCGGCGGCGCTGCGCCACGACCCGGGGCTCTCCGTC CGGTGGACGCCCGAGGAGCAGGCCGTGCTCGAAGGAGGGCTGGCCAGCTATGCGGCGGAT GCAGCTGTAGTTCGCTATGCAAAAATTGCTATGAATCTGCCTGACAAGACAGTGCGAGAT GTGGCCCTGCGTTGCAGATGGATGGCTAAAAAGGAGAGTAACAAGAAAAGGAAGGAAGAG TCATCTAAGAAAAACAAAGAAAAGAAGGAGAGAGCCAATGATTCTTCATCAAAAGGGCCA GCTCACCTAGTGGCCCGACCTAATGCTGCTCCATATTCTCTTCCAGTTCTTCCCATGGAT GATGATGATGTGTCATACAAAACAATTGGAGGCCAAACTGGTCAAATTCTTGAGCACAAT GCACAGATCTTGAACCAGATCTATACCAATATTTCAAACATGCAGGTGCAGGAGAACATC CCTCTTTTATGTCAAACTAGGGATAATATACTTGCAGTCCTGAAGGAGATAGGCGATGTT CCTGAGATAATGAGGCAGATGCCACCCCTTCCTGTAAAGTTGAATGAAGAACTGGCTAAC TCTATGTTGCCGAGGCCTCCACATACATGATATGTGCAACAGTTTGCTCAACCAAATCAA TTGCGCATGAAGATCAGTTTAGATAGATGGGTTATTTGCATATGCTTTGTCGCTATAGAT TCCAGATGTCTGATTGTGCTGTCCAGATCTTAAATCCAGCCATGTAACATTCTATACCTT GGTTCTATTTGTTCAGCTGATAGTAGGTGCTCCGTGTACAAGCCAGCAGTTTCAGTGAAA CAAGTTCGTAGCCCTCTAGTCCTTGTAGAAAAAAAACATAGGGGTTAAACTTCTGTACAG TGTCGAAAGAAATAGCATCTTTTCTGTTTCAGTTATGTTTAGAACTGGCATTCAGCCCAA TCTTACATGTTCGGACATGATATAATACCACCAAACTTCTTAATTTGCCAAAA



consensusID : consensus_6561#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 435
fasta sequence
                              [TTGTGTGATCGATTANAGAGGATTTNTCGGTTTGTACTGTTGTTNGGCCACTNGTATTTNGGCTTGTGTGGGGTGCGCTGATTATGATTGTGCCCAGATGGTTCTCGATTGGTGGCTGGTGCCAGGATGCTGTGAAATTGCCACGGCCCACTGGTGAACACNATGTGCTGATGACCCTTGGTTCTATGTTGTTGCACGCTGCGATGAGTGAGGTGCTCCGTGTACACAAGCCAGCAGTGTTCAGTGGAAACAAGTTCGTAGCCCTCTAGTGCCTGTGTGAGAAGAAAAAACATAAGGGGGTTGAAACTGTCTGTACAAGTGGTCGGAAAGAAATGAGCATGCTGTTTGCTGTTTCAGTTATGTTTAGAACTGGCATTCAGCCCAATCTTACATGTTCGGACATGATATAATACAAGCAAACTTCTTTAAAAAAAA]

[+] EMBL BQ907997             [TTGTGTGATCGATTANAGAGGATTTNTCGGTTTGTACTGTTGTTNGGCCACTNGTATTTNGGCTTGTGTGGGGTGCGCTGATTATGATTGTGCCCAGATGGTTCTCGATTGGTGGCTGGTGCCAGGATGCTGTGAAATTGCCACGGCCCACTGGTGAACACNATGTGCTGATGACCCTTGGTTCTATGTTGTTGCACGCTGCGATGAGTGAGGTGCTCCGTGTACACAAGCCAGCAGTGTTCAGTGGAAACAAGTTCGTAGCCCTCTAGTGCCTGTGTGAGAAGAAAAAACATAAGGGGGTTGAAACTGTCTGTACAAGTGGTCGGAAAGAAATGAGCATGCTGTTTGCTGTTTCAGTTATGTTTAGAACTGGCATTCAGCCCAATCTTACATGTTCGGACATGATATAATACAAGCAAACTTCTTTAAAAAAAA]


>consensus_6561#1 TTGTGTGATCGATTANAGAGGATTTNTCGGTTTGTACTGTTGTTNGGCCACTNGTATTTN GGCTTGTGTGGGGTGCGCTGATTATGATTGTGCCCAGATGGTTCTCGATTGGTGGCTGGT GCCAGGATGCTGTGAAATTGCCACGGCCCACTGGTGAACACNATGTGCTGATGACCCTTG GTTCTATGTTGTTGCACGCTGCGATGAGTGAGGTGCTCCGTGTACACAAGCCAGCAGTGT TCAGTGGAAACAAGTTCGTAGCCCTCTAGTGCCTGTGTGAGAAGAAAAAACATAAGGGGG TTGAAACTGTCTGTACAAGTGGTCGGAAAGAAATGAGCATGCTGTTTGCTGTTTCAGTTA TGTTTAGAACTGGCATTCAGCCCAATCTTACATGTTCGGACATGATATAATACAAGCAAA CTTCTTTAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6561#0      CCTTCTCCCTTCCTCGCTCCCCGTCCCCCGACTCGCCGCCGGCCGCGCCACCGGAGAATC 60
consensus_6561#1      ------------------------------------------------------------
                                                                                  

consensus_6561#0      CAAACCCTCGCCGCCGCCGACGCCGCCGCCCGGCCGCGCAGAGCTCTGATTCCGCGGAAT 120
consensus_6561#1      ------------------------------------------------------------
                                                                                  

consensus_6561#0      CCCTGCGCGCCTTCGCGAGATTCCCTCGGGTTTGGGCGGGACCGTCGTCCCCTGGCCTGA 180
consensus_6561#1      ------------------------------------------------------------
                                                                                  

consensus_6561#0      GGGGGGGTTGCCGAGTTGGCGGCGGCGGTGGCAGGCGGCGAGATGGGGGCGAACGCCGAC 240
consensus_6561#1      ------------------------------------------------------------
                                                                                  

consensus_6561#0      CCCACGGGGGTGCTTCTGGGCGGGCCCCACCACCGCAACCCTTCCCCCGCGCCGGCGCTG 300
consensus_6561#1      ------------------------------------------------------------
                                                                                  

consensus_6561#0      GCCCAGCCGCCGGGCGCGAGCACCGCGGCGGCGCTGCGCCACGACCCGGGGCTCTCCGTC 360
consensus_6561#1      ------------------------------------------------------------
                                                                                  

consensus_6561#0      CGGTGGACGCCCGAGGAGCAGGCCGTGCTCGAAGGAGGGCTGGCCAGCTATGCGGCGGAT 420
consensus_6561#1      ------------------------------------------------------------
                                                                                  

consensus_6561#0      GCAGCTGTAGTTCGCTATGCAAAAATTGCTATGAATCTGCCTGACAAGACAGTGCGAGAT 480
consensus_6561#1      ------------------------------------------------------------
                                                                                  

consensus_6561#0      GTGGCCCTGCGTTGCAGATGGATGGCTAAAAAGGAGAGTAACAAGAAAAGGAAGGAAGAG 540
consensus_6561#1      ------------------------------------------------------------
                                                                                  

consensus_6561#0      TCATCTAAGAAAAACAAAGAAAAGAAGGAGAGAGCCAATGATTCTTCATCAAAAGGGCCA 600
consensus_6561#1      ------------------------------------------------------------
                                                                                  

consensus_6561#0      GCTCACCTAGTGGCCCGACCTAATGCTGCTCCATATTCTCTTCCAGTTCTTCCCATGGAT 660
consensus_6561#1      ------------------------------------------------------------
                                                                                  

consensus_6561#0      GATGATGATGTGTCATACAAAACAATTGGAGGCCAAACTGGTCAAATTCTTGAGCACAAT 720
consensus_6561#1      ------------------------------------------------------------
                                                                                  

consensus_6561#0      GCACAGATCTTGAACCAGATCTATACCAATATTTCAAACATGCAGGTGCAGGAGAACATC 780
consensus_6561#1      ------------------------------------------------------------
                                                                                  

consensus_6561#0      CCTCTTTTATGTCAAACTAGGGATAATATACTTGCAGTCCTGAAGGAGATAGGCGATGTT 840
consensus_6561#1      ------------------------------------------------------------
                                                                                  

consensus_6561#0      CCTGAGATAATGAGGCAGATGCCACCCCTTCCTGTAAA-GTTGAATGAAGAACTGGCTAA 899
consensus_6561#1      -----------------------------TTGTGTGATCGATTANAGAGGATTTNTCGGT 31
                                                   *  *** *  * * *  ** **  *  *   

consensus_6561#0      CTCTA-TGTTGCCGAGGCCTCCACATACATGATATGTGCAACAGTTTGCTCAACCAAATC 958
consensus_6561#1      TTGTACTGTTGTTNGGCCACTNGTATTTN-GGCTTGTGTGG-GGTGCGCT-GATTA---T 85
                       * ** *****    * *      **    *   ****     **  ***  *  *    

consensus_6561#0      AATTGCGCATGAAGATCAGTTTAGATAGATGGGTTATTTGCATATGCTTTGTCGCTATAG 1018
consensus_6561#1      GATTGTGCCC--AGATGGTTCTCGATTGGTGGCTGGTGCCAGGATGCTGTG-------AA 136
                       **** **    ****   * * *** * *** *  *      ***** **       * 

consensus_6561#0      ATTCCAGATGTCTGATTGTGCTGTCCAGATCTTAAATCCAGCCATGTAACATTCTATACC 1078
consensus_6561#1      ATTGCCACGGCCCACTGGTGAACACNATGTGCTGA-----------TGACCCTTGGTTCT 185
                      *** *    * *   * ***    * *  *  * *           * **  *   * * 

consensus_6561#0      TTGGTTCTATTTGTTCAGCTGATAGTAGGTGCTCCGTGTACA--AGCCAGCAGT-TTCAG 1135
consensus_6561#1      ATGTTGTTGCACGCTGCGATGAGTG-AGGTGCTCCGTGTACACAAGCCAGCAGTGTTCAG 244
                       ** *  *    * *  * ***  * ****************  ********** *****

consensus_6561#0      TG-AAACAAGTTCGTAGCCCTCTAGTCCTTGTA----GAAAAAAAACATAGGGG---TTA 1187
consensus_6561#1      TGGAAACAAGTTCGTAGCCCTCTAGTGCCTGTGTGAGAAGAAAAAACATAAGGGGGTTGA 304
                      ** *********************** * ***      * ********** ***   * *

consensus_6561#0      AACT-TCTGTACA-GTGTC--GAAAGAAAT-AGCATC---TTTTCTGTTTCAGTTATGTT 1239
consensus_6561#1      AACTGTCTGTACAAGTGGTCGGAAAGAAATGAGCATGCTGTTTGCTGTTTCAGTTATGTT 364
                      **** ******** ***    ********* *****    *** ****************

consensus_6561#0      TAGAACTGGCATTCAGCCCAATCTTACATGTTCGGACATGATATAATACCACCAAACTTC 1299
consensus_6561#1      TAGAACTGGCATTCAGCCCAATCTTACATGTTCGGACATGATATAATACAAGCAAACTTC 424
                      ************************************************* * ********

consensus_6561#0      TTAATTTGCCAAAA 1313
consensus_6561#1      TTTA---AAAAAAA 435
                      ** *      ****




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)