These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6561#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1313 fasta sequence [CCTTCTCCCTTCCTCGCTCCCCGTCCCCCGACTCGCCGCCGGCCGCGCCACCGGAGAATCCAAACCCTCGCCGCCGCCGACGCCGCCGCCCGGCCGCGCAGAGCTCTGATTCCGCGGAATCCCTGCGCGCCTTCGCGAGATTCCCTCGGGTTTGGGCGGGACCGTCGTCCCCTGGCCTGAGGGGGGGTTGCCGAGTTGGCGGCGGCGGTGGCAGGCGGCGAGATGGGGGCGAACGCCGACCCCACGGGGGTGCTTCTGGGCGGGCCCCACCACCGCAACCCTTCCCCCGCGCCGGCGCTGGCCCAGCCGCCGGGCGCGAGCACCGCGGCGGCGCTGCGCCACGACCCGGGGCTCTCCGTCCGGTGGACGCCCGAGGAGCAGGCCGTGCTCGAAGGAGGGCTGGCCAGCTATGCGGCGGATGCAGCTGTAGTTCGCTATGCAAAAATTGCTATGAATCTGCCTGACAAGACAGTGCGAGATGTGGCCCTGCGTTGCAGATGGATGGCTAAAAAGGAGAGTAACAAGAAAAGGAAGGAAGAGTCATCTAAGAAAAACAAAGAAAAGAAGGAGAGAGCCAATGATTCTTCATCAAAAGGGCCAGCTCACCTAGTGGCCCGACCTAATGCTGCTCCATATTCTCTTCCAGTTCTTCCCATGGATGATGATGATGTGTCATACAAAACAATTGGAGGCCAAACTGGTCAAATTCTTGAGCACAATGCACAGATCTTGAACCAGATCTATACCAATATTTCAAACATGCAGGTGCAGGAGAACATCCCTCTTTTATGTCAAACTAGGGATAATATACTTGCAGTCCTGAAGGA---GATAGGCGATGTTCCTGAGATAATGAGGCAGATGCCACCCCTTCCTGTAAAGTTGAATGAAGAACTGGCTAACTCTATGTTGCCGAGGCCTCCACATACATGATATGTGCAACAGTTTGCTCAACCAAATCAATTGCGCATGAAGATCAGTTTAGATAGATGGGTTATTTGCATATGCTTTGTCGCTATAGATTCCAGATGTCTGATTGTGCTGTCCAGATCTTAAATCCAGCCATGTAAC-ATTCTATACCTTGGTTCTATTTGTTCAGCTGATAGTAGGTGCTCCGTGTAC-AAGCCAGCAGTTTCAGTGAAACAAGTTCGTAGCCCTCTAGTCCTTGTAGAAAAAAAACATAGGGGTTAAACTTCTGTACAGTGTCGAAAGAAATAGCATCTTTTCTGTTTCAGTTATGTTTAGAACTGGCATTCAGCCCAATCTTACATGTTCGGACATGATATAATACCACCAAACTTCTTAATTTGCCAAAA] [+] EMBL AK064721 [CCTTCTCCCTTCCTCGCTCCCCGTCCCCCGACTCGCCGCCGGCCGCGCCACCGGAGAATCCAAACCCTCGCCGCCGCCGACGCCGCCGCCCGGCCGCGCAGAGCTCTGATTCCGCGGAATCCCTGCGCGCCTTCGCGAGATTCCCTCGGGTTTGGGCGGGACCGTCGTCCCCTGGCCTGAGGGGGGGTTGCCGAGTTGGCGGCGGCGGTGGCAGGCGGCGAGATGGGGGCGAACGCCGACCCCACGGGGGTGCTTCTGGGCGGGCCCCACCACCGCAACCCTTCCCCCGCGCCGGCGCTGGCCCAGCCGCCGGGCGCGAGCACCGCGGCGGCGCTGCGCCACGACCCGGGGCTCTCCGTCCGGTGGACGCCCGAGGAGCAGGCCGTGCTCGAAGGAGGGCTGGCCAGCTATGCGGCGGATGCAGCTGTAGTTCGCTATGCAAAAATTGCTATGAATCTGCCTGACAAGACAGTGCGAGATGTGGCCCTGCGTTGCAGATGGATGGCTAAAAAGGAGAGTAACAAGAAAAGGAAGGAAGAGTCATCTAAGAAAAACAAAGAAAAGAAGGAGAGAGCCAATGATTCTTCATCAAAAGGGCCAGCTCACCTAGTGGCCCGACCTAATGCTGCTCCATATTCTCTTCCAGTTCTTCCCATGGATGATGATGATGTGTCATACAAAACAATTGGAGGCCAAACTGGTCAAATTCTTGAGCACAATGCACAGATCTTGAACCAGATCTATACCAATATTTCAAACATGCAGGTGCAGGAGAACATCCCTCTTTTATGTCAAACTAGGGATAATATACTTGCAGTCCTGAAGGA GATAGGCGATGTTCCTGAGATAATGAGGCAGATGCCACCCCTTCCTGTAAAGTTGAATGAAGAACTGGCTAACTCTATGTTGCCGAGGCCTCCACATACATGATATGTGCAACAGTTTGCTCAACCAAATCAATTGTGCATGAAGATCAGTTTAGATAGATGGGTTATTTGCATATGCTTTGTCGCTATAGATTCCAGATGTCTGATTGTGCTGTCCAGATCTTAAATCCAGCCATGTAACAATTCTATACCTTGGTTCTATTTGTTCAGCTGATAGTAGGTGCTCCGTGTACAAAGCCAGCAGTTTCAGTGAAACAAGTTCGTAGCCCTCTAGTCCTTGTAGAAAAAAAACATAGGGGTT AACTTCTGTACAGTGTCGAAAGAAATAGCATCTTTTCTGTTTCAGTTATGTTTAGAACTGGCATTCAGCCCAATCTTACATGTTCGGACATGATATAATACaagc ] [+] EMBL BI805607 [ AGCACAA GCACAGATCTTG ACCAGATCTATACC ATATTTC AACAT CAGGTGCAGGAG ACATCCCTCTTTTATGTC AACTAGGGATAATATACTNGCAGTCCTGAAGGACAGGATAGGCGATGTTCCTGAGATAATGA GCAGATGCCACCCCTTCCTGTAAAGTTGAATGAAGAACTGGCTAACTCTATGTTGCCGAGGCCTCCACATACATGATATGNGCAACAGTTTGCTCAACC AATCAATTGCGCATGAAGATCAGTTTAGATAGATGGGTTATTTGCATATGCTTTGTCGCTATAGATTCCAGATGTCTGATTGTGCTGTCCAGATCTTAAATCCAGCCATGTAAC ATTCTATACCTTGGTTCTATTTGTTCAGCTGATAGTAGGTGCTCCGTGTAC AAGCCAGCAGTTTCAGTGAAACAAGTTCGTAGCCCTCTAGTCCTTGTAGAAAAAAAACATAGGGGTTAAACTTCTGTACAGTGTCGAAAGAAATAGCATCTTTTCTGTTTCAGTTATGTTTAGAACTGGCATTCAGCCCAATCTTACATGTTC GACATGATATAATACCACCAAACTTCTTAATTTGCCAAAA] [+] EMBL BI806075 [ AATTGCGCATGAAGATCAGTTTAGATAGATGGGTTATTTGCATATGCTTTGTCGCTATAGATTCCAGATGTCTGATTGTGCTGTCCAGATCTTAAATCCAGCCATGTAAC ATTCTATACCTTGGTTCTATTTGTTCAGCTGATAGTAGGTGCTCCGTGTAC AAGCCA CAGTTTCAGTGAAACAAGTTCGTAGCCCTCTAGTCCTTGTAGAAAAAAAACATAGGGGTTAAACTTCTGTACAGTGTCGAAAGAAATAGCATCTTTTCTGTTTCAGTTATGTTTAGAACTGGCATTCAGCCCCATCTTACATGTTCGGACATGATATAATACCACCAAACTTCTTAAaaaa ] consensusID : consensus_6561#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 435 fasta sequence [TTGTGTGATCGATTANAGAGGATTTNTCGGTTTGTACTGTTGTTNGGCCACTNGTATTTNGGCTTGTGTGGGGTGCGCTGATTATGATTGTGCCCAGATGGTTCTCGATTGGTGGCTGGTGCCAGGATGCTGTGAAATTGCCACGGCCCACTGGTGAACACNATGTGCTGATGACCCTTGGTTCTATGTTGTTGCACGCTGCGATGAGTGAGGTGCTCCGTGTACACAAGCCAGCAGTGTTCAGTGGAAACAAGTTCGTAGCCCTCTAGTGCCTGTGTGAGAAGAAAAAACATAAGGGGGTTGAAACTGTCTGTACAAGTGGTCGGAAAGAAATGAGCATGCTGTTTGCTGTTTCAGTTATGTTTAGAACTGGCATTCAGCCCAATCTTACATGTTCGGACATGATATAATACAAGCAAACTTCTTTAAAAAAAA] [+] EMBL BQ907997 [TTGTGTGATCGATTANAGAGGATTTNTCGGTTTGTACTGTTGTTNGGCCACTNGTATTTNGGCTTGTGTGGGGTGCGCTGATTATGATTGTGCCCAGATGGTTCTCGATTGGTGGCTGGTGCCAGGATGCTGTGAAATTGCCACGGCCCACTGGTGAACACNATGTGCTGATGACCCTTGGTTCTATGTTGTTGCACGCTGCGATGAGTGAGGTGCTCCGTGTACACAAGCCAGCAGTGTTCAGTGGAAACAAGTTCGTAGCCCTCTAGTGCCTGTGTGAGAAGAAAAAACATAAGGGGGTTGAAACTGTCTGTACAAGTGGTCGGAAAGAAATGAGCATGCTGTTTGCTGTTTCAGTTATGTTTAGAACTGGCATTCAGCCCAATCTTACATGTTCGGACATGATATAATACAAGCAAACTTCTTTAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6561#0 CCTTCTCCCTTCCTCGCTCCCCGTCCCCCGACTCGCCGCCGGCCGCGCCACCGGAGAATC 60 consensus_6561#1 ------------------------------------------------------------ consensus_6561#0 CAAACCCTCGCCGCCGCCGACGCCGCCGCCCGGCCGCGCAGAGCTCTGATTCCGCGGAAT 120 consensus_6561#1 ------------------------------------------------------------ consensus_6561#0 CCCTGCGCGCCTTCGCGAGATTCCCTCGGGTTTGGGCGGGACCGTCGTCCCCTGGCCTGA 180 consensus_6561#1 ------------------------------------------------------------ consensus_6561#0 GGGGGGGTTGCCGAGTTGGCGGCGGCGGTGGCAGGCGGCGAGATGGGGGCGAACGCCGAC 240 consensus_6561#1 ------------------------------------------------------------ consensus_6561#0 CCCACGGGGGTGCTTCTGGGCGGGCCCCACCACCGCAACCCTTCCCCCGCGCCGGCGCTG 300 consensus_6561#1 ------------------------------------------------------------ consensus_6561#0 GCCCAGCCGCCGGGCGCGAGCACCGCGGCGGCGCTGCGCCACGACCCGGGGCTCTCCGTC 360 consensus_6561#1 ------------------------------------------------------------ consensus_6561#0 CGGTGGACGCCCGAGGAGCAGGCCGTGCTCGAAGGAGGGCTGGCCAGCTATGCGGCGGAT 420 consensus_6561#1 ------------------------------------------------------------ consensus_6561#0 GCAGCTGTAGTTCGCTATGCAAAAATTGCTATGAATCTGCCTGACAAGACAGTGCGAGAT 480 consensus_6561#1 ------------------------------------------------------------ consensus_6561#0 GTGGCCCTGCGTTGCAGATGGATGGCTAAAAAGGAGAGTAACAAGAAAAGGAAGGAAGAG 540 consensus_6561#1 ------------------------------------------------------------ consensus_6561#0 TCATCTAAGAAAAACAAAGAAAAGAAGGAGAGAGCCAATGATTCTTCATCAAAAGGGCCA 600 consensus_6561#1 ------------------------------------------------------------ consensus_6561#0 GCTCACCTAGTGGCCCGACCTAATGCTGCTCCATATTCTCTTCCAGTTCTTCCCATGGAT 660 consensus_6561#1 ------------------------------------------------------------ consensus_6561#0 GATGATGATGTGTCATACAAAACAATTGGAGGCCAAACTGGTCAAATTCTTGAGCACAAT 720 consensus_6561#1 ------------------------------------------------------------ consensus_6561#0 GCACAGATCTTGAACCAGATCTATACCAATATTTCAAACATGCAGGTGCAGGAGAACATC 780 consensus_6561#1 ------------------------------------------------------------ consensus_6561#0 CCTCTTTTATGTCAAACTAGGGATAATATACTTGCAGTCCTGAAGGAGATAGGCGATGTT 840 consensus_6561#1 ------------------------------------------------------------ consensus_6561#0 CCTGAGATAATGAGGCAGATGCCACCCCTTCCTGTAAA-GTTGAATGAAGAACTGGCTAA 899 consensus_6561#1 -----------------------------TTGTGTGATCGATTANAGAGGATTTNTCGGT 31 * *** * * * * ** ** * * consensus_6561#0 CTCTA-TGTTGCCGAGGCCTCCACATACATGATATGTGCAACAGTTTGCTCAACCAAATC 958 consensus_6561#1 TTGTACTGTTGTTNGGCCACTNGTATTTN-GGCTTGTGTGG-GGTGCGCT-GATTA---T 85 * ** ***** * * ** * **** ** *** * * consensus_6561#0 AATTGCGCATGAAGATCAGTTTAGATAGATGGGTTATTTGCATATGCTTTGTCGCTATAG 1018 consensus_6561#1 GATTGTGCCC--AGATGGTTCTCGATTGGTGGCTGGTGCCAGGATGCTGTG-------AA 136 **** ** **** * * *** * *** * * ***** ** * consensus_6561#0 ATTCCAGATGTCTGATTGTGCTGTCCAGATCTTAAATCCAGCCATGTAACATTCTATACC 1078 consensus_6561#1 ATTGCCACGGCCCACTGGTGAACACNATGTGCTGA-----------TGACCCTTGGTTCT 185 *** * * * * *** * * * * * * ** * * * consensus_6561#0 TTGGTTCTATTTGTTCAGCTGATAGTAGGTGCTCCGTGTACA--AGCCAGCAGT-TTCAG 1135 consensus_6561#1 ATGTTGTTGCACGCTGCGATGAGTG-AGGTGCTCCGTGTACACAAGCCAGCAGTGTTCAG 244 ** * * * * * *** * **************** ********** ***** consensus_6561#0 TG-AAACAAGTTCGTAGCCCTCTAGTCCTTGTA----GAAAAAAAACATAGGGG---TTA 1187 consensus_6561#1 TGGAAACAAGTTCGTAGCCCTCTAGTGCCTGTGTGAGAAGAAAAAACATAAGGGGGTTGA 304 ** *********************** * *** * ********** *** * * consensus_6561#0 AACT-TCTGTACA-GTGTC--GAAAGAAAT-AGCATC---TTTTCTGTTTCAGTTATGTT 1239 consensus_6561#1 AACTGTCTGTACAAGTGGTCGGAAAGAAATGAGCATGCTGTTTGCTGTTTCAGTTATGTT 364 **** ******** *** ********* ***** *** **************** consensus_6561#0 TAGAACTGGCATTCAGCCCAATCTTACATGTTCGGACATGATATAATACCACCAAACTTC 1299 consensus_6561#1 TAGAACTGGCATTCAGCCCAATCTTACATGTTCGGACATGATATAATACAAGCAAACTTC 424 ************************************************* * ******** consensus_6561#0 TTAATTTGCCAAAA 1313 consensus_6561#1 TTTA---AAAAAAA 435 ** * **** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||